mRNA_L-elsbetiae_contig496.12930.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig496.12930.1
Unique NamemRNA_L-elsbetiae_contig496.12930.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig496.12930.1 vs. uniprot
Match: D7FI07_ECTSI (GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI07_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.350e-25
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = -1 
Query:   97 ILKGAERIWPQAQEFLDRLTAAEATASRHGITGPAASVGASPLDGPVRGLELTPANEDAYYMHVAMRRAAAA 312
            +LKGAERIWPQAQ  LDRLT+AE  ASRH I GPAAS  A PLDGP  G ELTPANEDAYYMHVA+RRA+AA
Sbjct: 1093 VLKGAERIWPQAQALLDRLTSAETKASRHNIMGPAASSDAWPLDGPFAGFELTPANEDAYYMHVAIRRASAA 1164
[Close]
BLAST of mRNA_L-elsbetiae_contig496.12930.1 vs. uniprot
Match: A0A6H5L4S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.360e-25
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = -1 
Query:   97 ILKGAERIWPQAQEFLDRLTAAEATASRHGITGPAASVGASPLDGPVRGLELTPANEDAYYMHVAMRRAAAA 312
            +LKGAERIWPQAQ  LDRLT+AE  ASRH I GPAAS  A PLDGP  G ELTPANEDAYYMHVA+RRA+AA
Sbjct: 1247 VLKGAERIWPQAQALLDRLTSAETEASRHNIMGPAASSDAWPLDGPFAGFELTPANEDAYYMHVAIRRASAA 1318
[Close]
BLAST of mRNA_L-elsbetiae_contig496.12930.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.370e-25
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = -1 
Query:   97 ILKGAERIWPQAQEFLDRLTAAEATASRHGITGPAASVGASPLDGPVRGLELTPANEDAYYMHVAMRRAAAA 312
            +LKGAERIWPQAQ  LDRLT+AE  ASRH I GPAAS  A PLDGP  G ELTPANEDAYYMHVA+RRA+AA
Sbjct: 1662 VLKGAERIWPQAQALLDRLTSAETEASRHNIMGPAASSDAWPLDGPFAGFELTPANEDAYYMHVAIRRASAA 1733
[Close]
BLAST of mRNA_L-elsbetiae_contig496.12930.1 vs. uniprot
Match: D7FHY8_ECTSI (Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 6.470e-25
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = -1 
Query:   97 ILKGAERIWPQAQEFLDRLTAAEATASRHGITGPAASVGASPLDGPVRGLELTPANEDAYYMHVAMRRAAAA 312
            +LKGAERIWPQAQ  LDRL +AE  AS+H I GPAAS  A PLDGP  GLELTPANEDAYYMHVA+RRA+AA
Sbjct: 1822 VLKGAERIWPQAQALLDRLASAETKASQHNIMGPAASSDAWPLDGPFAGLELTPANEDAYYMHVAIRRASAA 1893
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig496.12930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FI07_ECTSI1.350e-2577.78GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L4S9_9PHAE1.360e-2577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJY6_9PHAE1.370e-2577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY8_ECTSI6.470e-2576.39Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig496contigL-elsbetiae_contig496:23808..24121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size316
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816495.7248154-CDS-L-elsbetiae_contig496:23807..241191622816495.7248154-CDS-L-elsbetiae_contig496:23807..24119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 23808..24119 +
1691683601.310872-CDS-L-elsbetiae_contig496:23807..241191691683601.310872-CDS-L-elsbetiae_contig496:23807..24119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 23808..24119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig496.12930.1prot_L-elsbetiae_contig496.12930.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig496 23808..24119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig496.12930.1

>prot_L-elsbetiae_contig496.12930.1 ID=prot_L-elsbetiae_contig496.12930.1|Name=mRNA_L-elsbetiae_contig496.12930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
RRRFRSPACSLPFPLPFLLLVLPLFFPCARSDGRGRAPHGDVHVVGVLVR
RSELEAAHGPVERRRADGGGGPRDAVPGGRGFGGGEAVQEFLRLGPDPLR
SLEN
back to top

mRNA from alignment at L-elsbetiae_contig496:23808..24121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig496.12930.1 ID=mRNA_L-elsbetiae_contig496.12930.1|Name=mRNA_L-elsbetiae_contig496.12930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=314bp|location=Sequence derived from alignment at L-elsbetiae_contig496:23808..24121+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCGCCGCTTCCGTTCCCCCGCTTGCAGTCTTCCCTTTCCTCTTCCTTT
CCTCCTCCTTGTGCTCCCTCTCTTCTTCCCCTGCGCGCGCTCGGACGGCC
GCGGCCGCGCGCCTCATGGCGACGTGCATGTAGTAGGCGTCCTCGTTCGC
CGGAGTGAGCTCGAGGCCGCGCACGGGCCCGTCGAGCGGCGACGCGCCGA
CGGAGGCGGCGGGCCCCGTGATGCCGTGCCGGGAGGCCGTGGCTTCGGCG
GCGGTGAGGCGGTCCAGGAATTCCTGCGCCTGGGGCCAGATCCGCTCCGC
TCCCTTGAGAATAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig496:23808..24121+

>mRNA_L-elsbetiae_contig496.12930.1 ID=mRNA_L-elsbetiae_contig496.12930.1|Name=mRNA_L-elsbetiae_contig496.12930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig496:23808..24121+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCGCCGCTTCCGTTCCCCCGCTTGCAGTCTTCCCTTTCCTCTTCCTTT
CCTCCTCCTTGTGCTCCCTCTCTTCTTCCCCTGCGCGCGCTCGGACGGCC
GCGGCCGCGCGCCTCATGGCGACGTGCATGTAGTAGGCGTCCTCGTTCGC
CGGAGTGAGCTCGAGGCCGCGCACGGGCCCGTCGAGCGGCGACGCGCCGA
CGGAGGCGGCGGGCCCCGTGATGCCGTGCCGGGAGGCCGTGGCTTCGGCG
GCGGTGAGGCGGTCCAGGAATTCCTGCGCCTGGGGCCAGATCCGCTCCGC
TCCCTTGAGAATCGTCGCCGCTTCCGTTCCCCCGCTTGCAGTCTTCCCTT
TCCTCTTCCTTTCCTCCTCCTTGTGCTCCCTCTCTTCTTCCCCTGCGCGC
GCTCGGACGGCCGCGGCCGCGCGCCTCATGGCGACGTGCATGTAGTAGGC
GTCCTCGTTCGCCGGAGTGAGCTCGAGGCCGCGCACGGGCCCGTCGAGCG
GCGACGCGCCGACGGAGGCGGCGGGCCCCGTGATGCCGTGCCGGGAGGCC
GTGGCTTCGGCGGCGGTGAGGCGGTCCAGGAATTCCTGCGCCTGGGGCCA
GATCCGCTCCGCTCCCTTGAGAAT
back to top