mRNA_L-elsbetiae_contig4942.12906.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: D7FQV0_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV0_ECTSI) HSP 1 Score: 223 bits (567), Expect = 2.850e-69 Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 1 Query: 1 ANRAQAFERKGDWAKALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAKFEGVGEIQAAITAVEFGRGDMKEAQKAWRGINIVDQQTYLKDAYLKDQLKWPPRV 351 ANRAQAFER+GDWAKALADYE GAINVQPGNVQPWWIRY+LVLFQEGRDFDSLAFLKRVQAKFEGVGE+QAA+TA+EFGRGDMK A+ AWRGINIVDQQ YLKD+YLKDQLKWPPRV Sbjct: 284 ANRAQAFERRGDWAKALADYE-GAINVQPGNVQPWWIRYSLVLFQEGRDFDSLAFLKRVQAKFEGVGEVQAAMTAIEFGRGDMKAAEGAWRGINIVDQQMYLKDSYLKDQLKWPPRV 399
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: A0A835YLD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD8_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.350e-37 Identity = 65/117 (55.56%), Postives = 86/117 (73.50%), Query Frame = 1 Query: 1 ANRAQAFERKGDWAKALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAKFEGVGEIQAAITAVEFGRGDMKEAQKAWRGINIVDQQTYLKDAYLKDQLKWPPRV 351 ANRAQA+ER+G+W KA+ADY A AI ++PG+VQPWW+R+AL LFQ G DFD+LA+ +R+ KF E AA+TA+ +GRGD EAQK W I + ++ YL YL QL+WPP+V Sbjct: 237 ANRAQAYERQGEWPKAVADYGA-AIALKPGDVQPWWLRFALSLFQAGADFDALAYARRIATKFGDAPEPLAALTAILYGRGDTVEAQKTWSQIALQERDRYLDAQYLSQQLRWPPKV 352
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: A0A7S2SDF4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDF4_9STRA) HSP 1 Score: 112 bits (279), Expect = 6.570e-28 Identity = 51/116 (43.97%), Postives = 78/116 (67.24%), Query Frame = 1 Query: 4 NRAQAFERKGDWAKALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAKFEGVGEIQAAITAVEFGRGDMKEAQKAWRGINIVDQQTYLKDAYLKDQLKWPPRV 351 +RAQA+ER GDWA A ADY+A A++++P +V+PWW+R++LVLFQ GRD D++A +RV++KF G E+ A+ + + EA K W + +Q Y A+L+ ++WPPR Sbjct: 145 SRAQAYERLGDWASAAADYQA-ALSLKPNDVEPWWLRFSLVLFQLGRDVDAVALARRVRSKFSGEAEVGIALACMLVDARQLTEATKLWFDQPSIQRQRYSDVAFLETAVRWPPRA 259
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: A0A7S2DWS4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWS4_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 4.410e-23 Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 1 Query: 7 RAQAFERKGDWAKALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAKFEGVGEIQAAITAVEFGRGDMKEAQKAWR-GINIVDQQTYLKDAYLKDQLKWPPRV 351 RAQA+ER G W +A DY A A+ + VQP+W+RYA VLFQ GRD ++++ +RV +F G E AA+ + GD EA + W I +Q Y + YL+++++WPPR+ Sbjct: 33 RAQAYERLGLWQQAADDYSA-AVTMDSKTVQPFWLRYAAVLFQLGRDNEAISLARRVTIRFAGATEPTAALVGMLSASGDAAEASRLWTVEFTIQQRQVYTQRTYLEEKIRWPPRL 147
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: A0A2V3J951_9FLOR (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J951_9FLOR) HSP 1 Score: 91.3 bits (225), Expect = 9.980e-20 Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 1 Query: 1 ANRAQAFERKGDWAKALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAKFEGVGEIQAAITAVEFGRGDMKEAQKAWRGINIVDQQTYLKDAYLKDQLKWPPRV 351 +NRA +E G W A+ DY+ ++ +VQP+WIRYAL LFQ + ++LA LKRV A+F G ++ A+ V + R D A+ W ++ + + + +L+D+ KWPPR Sbjct: 181 SNRAAVYEVLGKWDNAIRDYQKA---LRSNDVQPFWIRYALALFQRNKSVEALAILKRVAARFPGFNDVHVAMALVYYDRNDFAAAETEWSAVDRP--KLFENERFLRDERKWPPRA 292
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: R7QMM9_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMM9_CHOCR) HSP 1 Score: 90.1 bits (222), Expect = 6.000e-19 Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 1 Query: 1 ANRAQAFERKGDWAKALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAKFEGVGEIQAAITAVEFGRGDMKEAQKAWRGINIVDQ-QTYLKDAYLKDQLKWPPRV 351 +NRA +E G W A+ DY+A +Q +VQP+W RY LVLFQ + +++L+ LKRV +F+ V ++ AA+ + F RGD+ EA+ W ++VD+ + + +L + KWPPR Sbjct: 257 SNRAGVWEVMGKWDNAIRDYQAA---LQSNDVQPFWERYGLVLFQRNKSYEALSILKRVATRFD-VSDVHAAMAVIYFDRGDIAEAETQW---SLVDRPRLFESKKFLVSERKWPPRA 367
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: A0A7J7IBE2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IBE2_9RHOD) HSP 1 Score: 75.1 bits (183), Expect = 5.830e-15 Identity = 36/104 (34.62%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 46 ALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAK--FEGVGEIQAAITAVEFGRGDMKEAQKAWRGINIVDQQTYLKDAYLKDQLKWPPRV 351 AL DY+ A+ +PG+VQP+W+ YAL LFQ GRD D+ ++RV +K F +++AA + + RG + +A+ W + + + + +L+++ +WPPR Sbjct: 12 ALLDYQR-AVERRPGDVQPFWVDYALTLFQRGRDTDAFGIMRRVASKPSFAQSDDVKAAFAVILYDRGMLSDAEGLWGALERPRR--FQDENFLRNERRWPPRA 112
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: A0A5J4Z8P3_PORPP (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8P3_PORPP) HSP 1 Score: 75.5 bits (184), Expect = 6.940e-14 Identity = 37/116 (31.90%), Postives = 69/116 (59.48%), Query Frame = 1 Query: 4 NRAQAFERKGDWAKALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAKFEGVGEIQAAITAVEFGRGDMKEAQKAWRGINIVDQQTYLKDAYLKDQLKWPPRV 351 NRA R+ W AL DY+ A+ +P +V+P+W+ YA+VL+Q + ++L +KRV AK+ V ++ AA++ + + + D+ +A+ AW + + + A+L+ + W PR+ Sbjct: 171 NRATLLARQQKWTSALNDYQR-AVEKKPNDVEPFWLDYAMVLYQINKPGEALGVVKRVAAKYGTVDDVNAALSVMYYDKNDLPDAEGAWGA--VARPRLFTSKAFLEGR-HWTPRM 282
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: W7TJE8_9STRA (Peptidase s41 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJE8_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 5.960e-13 Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 1 ANRAQAFERKGDWAKALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAKFEGVGEIQAAITA----VEFGRG 243 AN+ A ERKGD A+AL +YE A+ +P +VQPWW+RY++VLFQE +D ++ +++V KF V E + A+ + V +GRG Sbjct: 281 ANKGLALERKGDLAQALENYEF-AVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRG 364
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Match: M1V9U6_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1V9U6_CYAM1) HSP 1 Score: 69.7 bits (169), Expect = 1.650e-11 Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 1 Query: 85 PGNVQPWWIRYALVLFQEGRDFDSLAFLKRVQAK--FEGVGEIQAAITAVEFGRGDMKEAQKAWRGINIVDQQTYLKDAYLKDQLKWPPRV 351 PG+VQP+W+ YAL LFQ GRD D+L ++RV +K F E++AA + + RG + +A+ W + + + + +L+++ WPPR Sbjct: 433 PGDVQPFWVDYALTLFQRGRDTDALGIMRRVASKPSFAQSDEVKAAYAVLLYDRGMLSDAEGLWGALQRPRR--FQDENFLRNERHWPPRA 521 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4942.12906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4942.12906.1 >prot_L-elsbetiae_contig4942.12906.1 ID=prot_L-elsbetiae_contig4942.12906.1|Name=mRNA_L-elsbetiae_contig4942.12906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp ANRAQAFERKGDWAKALADYEAGAINVQPGNVQPWWIRYALVLFQEGRDFback to top mRNA from alignment at L-elsbetiae_contig4942:9561..13377- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4942.12906.1 ID=mRNA_L-elsbetiae_contig4942.12906.1|Name=mRNA_L-elsbetiae_contig4942.12906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3817bp|location=Sequence derived from alignment at L-elsbetiae_contig4942:9561..13377- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4942:9561..13377- >mRNA_L-elsbetiae_contig4942.12906.1 ID=mRNA_L-elsbetiae_contig4942.12906.1|Name=mRNA_L-elsbetiae_contig4942.12906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig4942:9561..13377- (Laminarionema elsbetiae ELsaHSoW15)back to top |