mRNA_L-elsbetiae_contig4906.12840.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4906.12840.1
Unique NamemRNA_L-elsbetiae_contig4906.12840.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4906.12840.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.110e-44
Identity = 115/239 (48.12%), Postives = 139/239 (58.16%), Query Frame = 1 
Query:    4 EVSEVERREAAARLSLVGAFYGDKSRLQHNTTIAHTAVEHARAALRVATPLQALRIA------------VANQYNLGED--ESLFKWLGIVKPPPLTLPGSGDGLDGDE-ESGAEDEEEAWVVPFGDT-----AQEVVPAPSWLWTPWP--RGGLVPSRPR--NHRGRMAAPDPATRVVSAVATFGSLPIQREVELWVAGTGARQNQLRKLMAVEERELSKAWVTLWG*RLHLDRSTKT 648
            EV+ V RR+ AAR SLV AFY     L+H       A E+AR+ALRVA P  ++                  Q   GE   E LFKWLGIV+PPP T    GD    +E + GA  +E+AW VPF D        EV+P P  L+TPWP  R G V  RP   + RGR  A DPA+R+V A +TFG+L ++ EVELWVAGT  RQ  LR+LMAV+ERELSKAWV LW  R  LD  +KT
Sbjct:  638 EVNAVRRRDEAARSSLVEAFYSGDDLLRH------IAAEYARSALRVAPPFTSVAATDRPRAFWSRLEQYLQQQANGEQNGEPLFKWLGIVEPPPPT----GDQSTWEEGDDGAVADEDAWEVPFADAEIEVETFEVLPPPRRLFTPWPSARTGRVDLRPTPPSSRGRRHALDPASRLVLATSTFGTLNLRAEVELWVAGTNIRQEGLRRLMAVQERELSKAWVALWSHRRRLDPVSKT 866
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BLAST of mRNA_L-elsbetiae_contig4906.12840.1 vs. uniprot
Match: A0A6H5JAV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV0_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 6.350e-41
Identity = 110/240 (45.83%), Postives = 140/240 (58.33%), Query Frame = 1 
Query:    4 EVSEVERREAAARLSLVGAFYGDKSRLQHNTTIAHTAVEHARAALRVATPLQAL-----------RIAVANQYNL-GED--ESLFKWLGIVKPPPLTLPGSGDGLDG-DEESGAEDEEEAWVVPFGDT-----AQEVVPAPSWLWTPWP-----RGGLVPSRPRNHRGRMAAPDPATRVVSAVATFGSLPIQREVELWVAGTGARQNQLRKLMAVEERELSKAWVTLWG*RLHLDRSTKT 648
            +V+ V RR+ AAR SLV AFY     L+H       A E+AR+ALRVA P  ++           R+    Q    GE   E LFKWLGIV+PPP T    GD     D++ GA  +E+AW  PF +        E++P P  L+T WP     R  L P+ P +  GR  A DPA+R+VSA +TFG+L ++ EVELWVAG+  RQ  LR+LMAV+ERELSKAWV LWG R  LD  +KT
Sbjct:  394 KVNVVRRRDEAARSSLVEAFYSGDDLLRH------IAAEYARSALRVAAPFTSVAATDRPRAFWSRLEQYQQQQADGEQNGEPLFKWLGIVEPPPPT----GDQSTWKDDDDGAVADEDAWEAPFANAEIEEETFEILPPPQTLFTAWPSARTERVDLRPTPPSSW-GRRRALDPASRLVSATSTFGTLRLRAEVELWVAGSNIRQKGLRRLMAVQERELSKAWVALWGHRRRLDPVSKT 622
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4906.12840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K5_ECTSI4.110e-4448.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JAV0_9PHAE6.350e-4145.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4906contigL-elsbetiae_contig4906:9340..10166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue5.4e-38
Seed eggNOG ortholog2880.D7G6K5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EGD3@1,2SAJF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size650
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4906.12840.1prot_L-elsbetiae_contig4906.12840.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4906 9340..10134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.5724158-CDS-L-elsbetiae_contig4906:9339..99061622816486.5724158-CDS-L-elsbetiae_contig4906:9339..9906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 9340..9906 +
1691683594.6593444-CDS-L-elsbetiae_contig4906:9339..99061691683594.6593444-CDS-L-elsbetiae_contig4906:9339..9906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 9340..9906 +
1622816486.5852344-CDS-L-elsbetiae_contig4906:10083..101341622816486.5852344-CDS-L-elsbetiae_contig4906:10083..10134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 10084..10134 +
1691683594.6737196-CDS-L-elsbetiae_contig4906:10083..101341691683594.6737196-CDS-L-elsbetiae_contig4906:10083..10134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 10084..10134 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.5978146-UTR-L-elsbetiae_contig4906:10134..101661622816486.5978146-UTR-L-elsbetiae_contig4906:10134..10166Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 10135..10166 +
1691683594.683328-UTR-L-elsbetiae_contig4906:10134..101661691683594.683328-UTR-L-elsbetiae_contig4906:10134..10166Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 10135..10166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4906.12840.1

>prot_L-elsbetiae_contig4906.12840.1 ID=prot_L-elsbetiae_contig4906.12840.1|Name=mRNA_L-elsbetiae_contig4906.12840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
MEVSEVERREAAARLSLVGAFYGDKSRLQHNTTIAHTAVEHARAALRVAT
PLQALRIAVANQYNLGEDESLFKWLGIVKPPPLTLPGSGDGLDGDEESGA
EDEEEAWVVPFGDTAQEVVPAPSWLWTPWPRGGLVPSRPRNHRGRMAAPD
PATRVVSAVATFGSLPIQREVELWVAGTGARQNQLRKLMAVEERELSKAW
VTLWG*
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mRNA from alignment at L-elsbetiae_contig4906:9340..10166+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4906.12840.1 ID=mRNA_L-elsbetiae_contig4906.12840.1|Name=mRNA_L-elsbetiae_contig4906.12840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=827bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:9340..10166+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTTTCGGAGGTGGAGCGGAGAGAGGCGGCAGCGCGGTTGTCGCT
GGTGGGGGCCTTCTACGGTGACAAATCCCGACTCCAGCACAACACGACTA
TCGCGCACACCGCCGTGGAACACGCTCGAGCCGCTCTCCGCGTGGCCACT
CCCCTGCAAGCTCTCCGTATAGCTGTCGCCAACCAATACAATTTAGGCGA
AGACGAGTCCCTCTTCAAGTGGCTGGGGATCGTCAAGCCGCCACCTCTGA
CTCTTCCCGGGAGCGGTGACGGACTTGACGGGGATGAGGAGAGCGGTGCC
GAGGACGAAGAAGAAGCGTGGGTGGTGCCATTCGGCGATACTGCACAGGA
AGTCGTCCCCGCTCCATCGTGGCTCTGGACACCTTGGCCTCGGGGGGGGC
TTGTCCCGAGTCGGCCTAGGAATCACCGAGGCCGCATGGCGGCGCCGGAC
CCGGCGACGCGAGTCGTGTCGGCGGTGGCGACATTCGGGTCGCTGCCGAT
CCAGAGGGAGGTGGAGCTTTGGGTGGCCGGCACAGGGGCTCGGCAGAACC
AGCTGCGGAAGCTGATGGTGAGTTCTTGGCATGTTGGAGGCTACTGTTTC
GTGTCGTCGGCCTGCTCGATGTGGGCGTGTGTGTGTGTGGGTGCGTGCGT
GCATTTGCGTGTGTCTTCTCTCCAGCCGTTTCTCTCCTTGGCCATCGTCG
CCTCGCAACTAACGACTCTCTCCTTCAACAAATCCCCAAGCCAGGCCGTC
GAGGAACGCGAGCTCTCAAAGGCCTGGGTCACGCTGTGGGGTTGACGTCT
GCACCTCGACCGCTCCACCAAGACTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4906:9340..10166+

>mRNA_L-elsbetiae_contig4906.12840.1 ID=mRNA_L-elsbetiae_contig4906.12840.1|Name=mRNA_L-elsbetiae_contig4906.12840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:9340..10166+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTTTCGGAGGTGGAGCGGAGAGAGGCGGCAGCGCGGTTGTCGCT
GGTGGGGGCCTTCTACGGTGACAAATCCCGACTCCAGCACAACACGACTA
TCGCGCACACCGCCGTGGAACACGCTCGAGCCGCTCTCCGCGTGGCCACT
CCCCTGCAAGCTCTCCGTATAGCTGTCGCCAACCAATACAATTTAGGCGA
AGACGAGTCCCTCTTCAAGTGGCTGGGGATCGTCAAGCCGCCACCTCTGA
CTCTTCCCGGGAGCGGTGACGGACTTGACGGGGATGAGGAGAGCGGTGCC
GAGGACGAAGAAGAAGCGTGGGTGGTGCCATTCGGCGATACTGCACAGGA
AGTCGTCCCCGCTCCATCGTGGCTCTGGACACCTTGGCCTCGGGGGGGGC
TTGTCCCGAGTCGGCCTAGGAATCACCGAGGCCGCATGGCGGCGCCGGAC
CCGGCGACGCGAGTCGTGTCGGCGGTGGCGACATTCGGGTCGCTGCCGAT
CCAGAGGGAGGTGGAGCTTTGGGTGGCCGGCACAGGGGCTCGGCAGAACC
AGCTGCGGAAGCTGATGATGGAGGTTTCGGAGGTGGAGCGGAGAGAGGCG
GCAGCGCGGTTGTCGCTGGTGGGGGCCTTCTACGGTGACAAATCCCGACT
CCAGCACAACACGACTATCGCGCACACCGCCGTGGAACACGCTCGAGCCG
CTCTCCGCGTGGCCACTCCCCTGCAAGCTCTCCGTATAGCTGTCGCCAAC
CAATACAATTTAGGCGAAGACGAGTCCCTCTTCAAGTGGCTGGGGATCGT
CAAGCCGCCACCTCTGACTCTTCCCGGGAGCGGTGACGGACTTGACGGGG
ATGAGGAGAGCGGTGCCGAGGACGAAGAAGAAGCGTGGGTGGTGCCATTC
GGCGATACTGCACAGGAAGTCGTCCCCGCTCCATCGTGGCTCTGGACACC
TTGGCCTCGGGGGGGGCTTGTCCCGAGTCGGCCTAGGAATCACCGAGGCC
GCATGGCGGCGCCGGACCCGGCGACGCGAGTCGTGTCGGCGGTGGCGACA
TTCGGGTCGCTGCCGATCCAGAGGGAGGTGGAGCTTTGGGTGGCCGGCAC
AGGGGCTCGGCAGAACCAGCTGCGGAAGCTGATGGCCGTCGAGGAACGCG
AGCTCTCAAAGGCCTGGGTCACGCTGTGGGGTTGAGCCGTCGAGGAACGC
GAGCTCTCAAAGGCCTGGGTCACGCTGTGGGGTTGA
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