mRNA_L-elsbetiae_contig4906.12839.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4906.12839.1
Unique NamemRNA_L-elsbetiae_contig4906.12839.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4906.12839.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.930e-25
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 CDQYEAQRGHEDVCKCPGCGVYVVKGDGCRRWISGCDATTCICGRSFDWNVLV---QHWWANVFRDTYPDDTERLAAEIMRRGPPTA 252
            C+QYEA RGH+DVCKCPGCGVYVVKGD       GCD+ +CICG  F W+ LV       A+ FRD +P+DT R AA+I+RRGPPTA
Sbjct:  335 CEQYEAGRGHQDVCKCPGCGVYVVKGD-------GCDSISCICGHDFSWSELVAARHRRIADAFRDAHPEDTGRAAAQIIRRGPPTA 414
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BLAST of mRNA_L-elsbetiae_contig4906.12839.1 vs. uniprot
Match: A0A6H5JAV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.330e-24
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 CDQYEAQRGHEDVCKCPGCGVYVVKGDGCRRWISGCDATTCICGRSFDWNVLV---QHWWANVFRDTYPDDTERLAAEIMRRGPPTA 252
            C+QYEA RGH+DVCKCPGCGVYVVKGD       GCD+ +C+CG  F+W+ LV        + FRD +P+DT R AA+I+RRGPPTA
Sbjct:  149 CEQYEAGRGHQDVCKCPGCGVYVVKGD-------GCDSISCVCGHCFNWSELVAARHRRIVDAFRDAHPEDTGRAAAQIIRRGPPTA 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4906.12839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K5_ECTSI2.930e-2560.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JAV0_9PHAE1.330e-2458.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4906contigL-elsbetiae_contig4906:7111..8184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog2880.D7G6K5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EGD3@1,2SAJF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size556
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.4739308-CDS-L-elsbetiae_contig4906:7110..71921622816486.4739308-CDS-L-elsbetiae_contig4906:7110..7192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 7111..7192 +
1691683594.6107397-CDS-L-elsbetiae_contig4906:7110..71921691683594.6107397-CDS-L-elsbetiae_contig4906:7110..7192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 7111..7192 +
1622816486.4852607-CDS-L-elsbetiae_contig4906:7710..81831622816486.4852607-CDS-L-elsbetiae_contig4906:7710..8183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 7711..8183 +
1691683594.6213758-CDS-L-elsbetiae_contig4906:7710..81831691683594.6213758-CDS-L-elsbetiae_contig4906:7710..8183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 7711..8183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4906.12839.1prot_L-elsbetiae_contig4906.12839.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4906 7111..8183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4906.12839.1

>prot_L-elsbetiae_contig4906.12839.1 ID=prot_L-elsbetiae_contig4906.12839.1|Name=mRNA_L-elsbetiae_contig4906.12839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
CDQYEAQRGHEDVCKCPGCGVYVVKGDGCRRWISGCDATTCICGRSFDWN
VLVQHWWANVFRDTYPDDTERLAAEIMRRGPPTAGAEATEQAPPVTSAAI
AAAAAAAASGNALAGATGSSVSGGQEMEVDVETAGIEIMFPSSQGEGTGG
QEESPQPLASTLAADGAGRSEWTTVGGENARGSGS
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mRNA from alignment at L-elsbetiae_contig4906:7111..8184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4906.12839.1 ID=mRNA_L-elsbetiae_contig4906.12839.1|Name=mRNA_L-elsbetiae_contig4906.12839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:7111..8184+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGACCAGTACGAAGCACAGCGCGGTCACGAGGATGTCTGCAAGTGCCC
GGGCTGTGGGGTCTACGTCGTCAAGGGTGACGGTGAGAAGAGAGACTGGG
GAGATATGGCATGCACAAATACGGGAAGGCCAACGCAATTTGCGGGTCCC
TTAATGTATTTGTCGCGCTTTAGACGCGAATATTCCGACTATGTCGTTTC
AAGCTCGAGGGTCATGCACCACTCAGTATTTGTTCGCTTGCAAAAGAACC
CCCGATTTGTCTCGACAGGACGCAAGCATAGCCTAGCCCTGAGAAACTTG
TTAACCGTTGCGGCATCGACGCTATAATAGCCACTATTCTCATGATGTGG
GTTGGTGGTGCTTGGAGCAGAGAGAGAGAGCAGACACGCGCGACTCGTGT
GTCTTTCCTATCGCTGTCTTCTTCACTCTTCGTGCACTCGCCGAAAAATC
ATCGACTCGGAGCCCCCCCAGGCCTGGGATCCCCTTGATTAAACTTCCAA
AGCTCGTTTGTTTTGTGCACGTTGTAAAACGATTATCGCCCAGTCTGAGG
TCGCATTTTCCTTGATCACTTTCCCAAAATACTCCCCGATCTATGGGAAG
GTTGCCGACGCTGGATTTCAGGCTGCGATGCCACCACCTGCATCTGCGGG
CGCAGCTTCGACTGGAACGTGCTCGTGCAACACTGGTGGGCTAATGTTTT
CCGGGACACCTACCCCGACGACACCGAGCGTTTGGCGGCGGAAATCATGC
GGCGCGGCCCGCCTACCGCTGGTGCCGAGGCGACCGAGCAGGCGCCGCCT
GTAACGTCCGCCGCCATCGCCGCCGCCGCCGCCGCCGCCGCAAGCGGCAA
CGCTTTGGCTGGCGCTACCGGCAGCAGCGTATCCGGAGGACAGGAGATGG
AAGTGGATGTGGAGACGGCGGGGATCGAAATCATGTTCCCTTCCTCCCAA
GGAGAAGGGACGGGGGGGCAAGAAGAGTCGCCACAGCCACTGGCCTCGAC
GCTGGCGGCTGATGGCGCCGGGCGGTCGGAATGGACGACTGTTGGTGGAG
AGAACGCCAGGGGATCGGGTTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4906:7111..8184+

>mRNA_L-elsbetiae_contig4906.12839.1 ID=mRNA_L-elsbetiae_contig4906.12839.1|Name=mRNA_L-elsbetiae_contig4906.12839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:7111..8184+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGACCAGTACGAAGCACAGCGCGGTCACGAGGATGTCTGCAAGTGCCC
GGGCTGTGGGGTCTACGTCGTCAAGGGTGACGTGCGACCAGTACGAAGCA
CAGCGCGGTCACGAGGATGTCTGCAAGTGCCCGGGCTGTGGGGTCTACGT
CGTCAAGGGTGACGGTTGCCGACGCTGGATTTCAGGCTGCGATGCCACCA
CCTGCATCTGCGGGCGCAGCTTCGACTGGAACGTGCTCGTGCAACACTGG
TGGGCTAATGTTTTCCGGGACACCTACCCCGACGACACCGAGCGTTTGGC
GGCGGAAATCATGCGGCGCGGCCCGCCTACCGCTGGTGCCGAGGCGACCG
AGCAGGCGCCGCCTGTAACGTCCGCCGCCATCGCCGCCGCCGCCGCCGCC
GCCGCAAGCGGCAACGCTTTGGCTGGCGCTACCGGCAGCAGCGTATCCGG
AGGACAGGAGATGGAAGTGGATGTGGAGACGGCGGGGATCGAAATCATGT
TCCCTTCCTCCCAAGGAGAAGGGACGGGGGGGCAAGAAGAGTCGCCACAG
CCACTGGCCTCGACGCTGGCGGCTGATGGCGCCGGGCGGTCGGAATGGAC
GACTGTTGGTGGAGAGAACGCCAGGGGATCGGGTTCGGTTGCCGACGCTG
GATTTCAGGCTGCGATGCCACCACCTGCATCTGCGGGCGCAGCTTCGACT
GGAACGTGCTCGTGCAACACTGGTGGGCTAATGTTTTCCGGGACACCTAC
CCCGACGACACCGAGCGTTTGGCGGCGGAAATCATGCGGCGCGGCCCGCC
TACCGCTGGTGCCGAGGCGACCGAGCAGGCGCCGCCTGTAACGTCCGCCG
CCATCGCCGCCGCCGCCGCCGCCGCCGCAAGCGGCAACGCTTTGGCTGGC
GCTACCGGCAGCAGCGTATCCGGAGGACAGGAGATGGAAGTGGATGTGGA
GACGGCGGGGATCGAAATCATGTTCCCTTCCTCCCAAGGAGAAGGGACGG
GGGGGCAAGAAGAGTCGCCACAGCCACTGGCCTCGACGCTGGCGGCTGAT
GGCGCCGGGCGGTCGGAATGGACGACTGTTGGTGGAGAGAACGCCAGGGG
ATCGGGTTCG
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