mRNA_L-elsbetiae_contig4894.12817.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4894.12817.1
Unique NamemRNA_L-elsbetiae_contig4894.12817.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4894.12817.1 vs. uniprot
Match: D8LQ05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ05_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.740e-72
Identity = 172/305 (56.39%), Postives = 196/305 (64.26%), Query Frame = 1 
Query:    1 RGSRPSRSAAVTRWDADLDRARDAHRKKQWTEVQQWCTRVIDIADDWNAIEQAHLRLALAEQKRTGADGGRRAFQHGIEHCPSSDTLMLAWALMESKIKN-ARSRKIAKALLRRAVALNPKKNSPVLRWAVFDDLDRVVEAAGGAAVQAVRSALSPGQXXXXXXXXXXXXXXXXXXXXXXXXXX-TRA-EEMEERVFATDLLELCRSNQALQKEGERQEEEEVRQENQDLPVVAAAIXXXXXXXXXXXXXXXXXXXXPSARFEELAEELERRGGGVEGRGRELCGSWKLVFTTCTECDRLLTRTG 906
            R S   RS  +TRWDA L+RAR AHR K WTEVQ WC+RVID+ADDWNA+EQAHLRLALA QK +G  GGRRAFQ GI  CPSSDTL++AWALMESKIKN A SR+ A AL+RRA+ALNP KN  VL W+VF     + EAAG               XXXXXX                     TRA E  EE + AT LL+LC SN+  Q+  E               V  AA XXXXXXXXXXXXXXXXXXXXPS RF+ELA ELER+GGG     R L G+W+LVFTT  +C+R L+RTG
Sbjct:   51 RSSLSPRSKPLTRWDAQLERARSAHRVKDWTEVQHWCSRVIDLADDWNAVEQAHLRLALAAQKSSGVAGGRRAFQQGIRDCPSSDTLLVAWALMESKIKNSAHSRRRAWALIRRAIALNPNKNRRVLSWSVFAADLALAEAAGXXXXXXXXXXXXXXXXXXXXXLPEPTAAGGKGIGGAAAGGVRTRALEREEETILATKLLDLCHSNKGFQEAPE---------------VPPAATXXXXXXXXXXXXXXXXXXXXPSERFQELAGELERKGGGAAAGVRALSGTWRLVFTTSADCNRYLSRTG 340
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4894.12817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ05_ECTSI1.740e-7256.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4894contigL-elsbetiae_contig4894:117..2464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size906
Cds size906
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4894.12817.1prot_L-elsbetiae_contig4894.12817.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4894 117..2464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816483.5855787-CDS-L-elsbetiae_contig4894:116..5101622816483.5855787-CDS-L-elsbetiae_contig4894:116..510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4894 117..510 -
1691683592.457851-CDS-L-elsbetiae_contig4894:116..5101691683592.457851-CDS-L-elsbetiae_contig4894:116..510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4894 117..510 -
1622816483.6024427-CDS-L-elsbetiae_contig4894:627..9141622816483.6024427-CDS-L-elsbetiae_contig4894:627..914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4894 628..914 -
1691683592.4689837-CDS-L-elsbetiae_contig4894:627..9141691683592.4689837-CDS-L-elsbetiae_contig4894:627..914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4894 628..914 -
1622816483.614024-CDS-L-elsbetiae_contig4894:1462..16281622816483.614024-CDS-L-elsbetiae_contig4894:1462..1628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4894 1463..1628 -
1691683592.4798825-CDS-L-elsbetiae_contig4894:1462..16281691683592.4798825-CDS-L-elsbetiae_contig4894:1462..1628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4894 1463..1628 -
1622816483.6266348-CDS-L-elsbetiae_contig4894:2405..24641622816483.6266348-CDS-L-elsbetiae_contig4894:2405..2464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4894 2406..2464 -
1691683592.4920967-CDS-L-elsbetiae_contig4894:2405..24641691683592.4920967-CDS-L-elsbetiae_contig4894:2405..2464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4894 2406..2464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4894.12817.1

>prot_L-elsbetiae_contig4894.12817.1 ID=prot_L-elsbetiae_contig4894.12817.1|Name=mRNA_L-elsbetiae_contig4894.12817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=302bp
RGSRPSRSAAVTRWDADLDRARDAHRKKQWTEVQQWCTRVIDIADDWNAI
EQAHLRLALAEQKRTGADGGRRAFQHGIEHCPSSDTLMLAWALMESKIKN
ARSRKIAKALLRRAVALNPKKNSPVLRWAVFDDLDRVVEAAGGAAVQAVR
SALSPGQQQQQQQQQPRGDHPSSSSSGGGCRRTTRAEEMEERVFATDLLE
LCRSNQALQKEGERQEEEEVRQENQDLPVVAAAIAPAVAPAVAPSPAAVK
ASAAPSARFEELAEELERRGGGVEGRGRELCGSWKLVFTTCTECDRLLTR
TG
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mRNA from alignment at L-elsbetiae_contig4894:117..2464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4894.12817.1 ID=mRNA_L-elsbetiae_contig4894.12817.1|Name=mRNA_L-elsbetiae_contig4894.12817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2348bp|location=Sequence derived from alignment at L-elsbetiae_contig4894:117..2464- (Laminarionema elsbetiae ELsaHSoW15)
AGAGGTTCTCGACCGTCTCGTTCAGCGGCCGTGACGCGATGGGATGCAGA
CTTGGATAGGTGAGACTTCCCTGCATCGCAGGTGGATCTAGACTACCATC
TAGATAACAAGGTACATTATATCTTCCGCGATCCAGTTCAAAGTTGAGGT
TCCGTATGTTGTACAGCAGAGAGGCATGTTGCCGCTGCTGTAATGTGGGA
CTAGGCTGCGGTAGGCCTGACCTGCTGTTCAGGAGATTGGTGGCCGTGGC
GGTGACTATGATAGCGGGGAGGCGATAGTTTCGGACTCTTTTTTTAGACT
CGACTAGATTCTCTGTTGCTGCTTGTTGTAGTCTGGCCGGGATAATATGT
GTCCATGTAGATAGTAGGCTGTGTTGTCGTGCACAGAAAAAAAAGTGCGT
ACTTATAAATCCTCTGGCTACGGTTGGGTTTCTCTCACCAGTATTGACAC
AGCCCATGCGCTTGCGAACTACACAATAATCTGTTCACCTTTTTAGAAAC
ACTCAAATCGCGGACAATTCTTGTTGCTGCGCTCTGAAAAATCGTGTGCC
CTCGCGTGAACTCAGGTCGGGAAGTTTTTTTTTGTAAACTACTTGTATCT
ATGTACATAGAGCACGCGGTGCGAGTGTGGAGGAAGACACGGCAGCCTAC
CCCCCTGCCTAATGGCAGCCTATTTACCACTTTCCCCAGACTAGATCCTG
GTACGCGCGTCATTCTTTTTTTTGGGTGCCATTTTTTGTGGTGGTGGTGA
ACTCTTGCTGTTCGCTCACCAAAGCCATCCATCCGCTGGCCGCTGTGCGG
GCTTTGTTCGTCCCCTTCACGCGCACGCAAATCCAGAGCTCGAGACGCTC
ATCGCAAGAAGCAATGGACGGAGGTGCAGCAGTGGTGTACGAGAGTCATC
GACATCGCCGACGACTGGAACGCGATAGAGCAAGCCCACCTCAGGCTGGC
GCTAGCCGAGCAGAAGAGGACCGGGGCTGACGGAGGACGACGAGCCTTTC
AGGTGACCCCCTCGACAAGAACAATTACATAGAGTACTTCTTGACGTAGT
CACGCGGGCCATTCTCGGTATGTATGTGTGTATTTCATTCCCCAAATTCT
ACGCCTCTGTTGCCCGTTCGACGAAACAAAATTACTCGACCGGACCAATA
CTTACAGACGTCACCTAGATAGACTACCCCCTCCCATCGTTGGCTTATTT
GCCGTCTGCCCCACTGGGCCCCCTTTCTCCACCACGACTAGCTAGACAAT
CCAACCGGGGTCACACAGGAGGGGGAGGGGGGGTGCATAATGACCTGTGT
ATTGAAATGTTCAATTCGCCACGGATAGGCTTGAACTCGCTACATAAGCG
TTTTTTTTTTCGTTTTACCTACACCTTCTTTTTTTCTACACTAAAACCAG
TATAATAAGGACTTTTGTTCCTCCGCAAATTCGTAAATCGCCTAGCGAGT
TCAAGCCTAGCCACGGAGTCGCGTCTCTAACATTGGGAGGTTCTTTCTCT
CAAAATTCCCTGCTGCTGCTGGTTTGTTTCTGTTTTCCAAAAAAACACAG
CACGGGATAGAGCACTGCCCGAGCTCCGACACCCTCATGCTGGCCTGGGC
CCTCATGGAGTCCAAGATCAAGAACGCCCGGTCGAGAAAGATCGCCAAGG
CCCTGCTCCGACGCGCGGTCGCCCTCAACCCGAAGAAAAACTCGCCGGTG
CTGAGGTGGGCCGTGTTCGACGACCTCGACCGGGTGGTGGAGGCGGCGGG
CGGGGCCGCCGTGCAGGCCGTGCGCTCGGCCCTTTCCCCGGGGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCCGCGGGGAGACCACCCGTTGTCCTCGTCG
CCGTCGGCAGCGGACCAGGCGGCGGCGGCGCTACCGGCGACAGAGGTGGG
CAGCACGAGCGTCAGCAGCATGAGCGTCAGCACGGGCGTCAGCACGAGCG
TCAGCAGCAGCAGCAGCAGCGGCGGTGGCTGCAGAAGGACCACCAGAGCC
GAGGAGATGGAAGAGCGAGTCTTCGCGACCGACCTCTTGGAGCTGTGCCG
CAGCAACCAAGCCCTCCAAAAGGAAGGAGAGAGGCAAGAAGAAGAAGAAG
TGCGGCAGGAAAACCAAGACCTGCCCGTTGTTGCCGCCGCGATTGCGCCC
GCGGTTGCGCCGGCGGTTGCGCCCTCCCCTGCCGCCGTCAAGGCTTCGGC
GGCGCCGTCTGCCCGGTTCGAAGAGCTGGCGGAAGAGCTGGAGAGGAGGG
GGGGCGGGGTGGAGGGGCGAGGACGCGAGCTCTGCGGCAGCTGGAAGCTC
GTCTTCACGACCTGTACTGAGTGCGACCGCCTCCTGACCCGGACAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4894:117..2464-

>mRNA_L-elsbetiae_contig4894.12817.1 ID=mRNA_L-elsbetiae_contig4894.12817.1|Name=mRNA_L-elsbetiae_contig4894.12817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1812bp|location=Sequence derived from alignment at L-elsbetiae_contig4894:117..2464- (Laminarionema elsbetiae ELsaHSoW15)
AGAGGTTCTCGACCGTCTCGTTCAGCGGCCGTGACGCGATGGGATGCAGA
CTTGGATAGAGAGGTTCTCGACCGTCTCGTTCAGCGGCCGTGACGCGATG
GGATGCAGACTTGGATAGAGCTCGAGACGCTCATCGCAAGAAGCAATGGA
CGGAGGTGCAGCAGTGGTGTACGAGAGTCATCGACATCGCCGACGACTGG
AACGCGATAGAGCAAGCCCACCTCAGGCTGGCGCTAGCCGAGCAGAAGAG
GACCGGGGCTGACGGAGGACGACGAGCCTTTCAGAGCTCGAGACGCTCAT
CGCAAGAAGCAATGGACGGAGGTGCAGCAGTGGTGTACGAGAGTCATCGA
CATCGCCGACGACTGGAACGCGATAGAGCAAGCCCACCTCAGGCTGGCGC
TAGCCGAGCAGAAGAGGACCGGGGCTGACGGAGGACGACGAGCCTTTCAG
CACGGGATAGAGCACTGCCCGAGCTCCGACACCCTCATGCTGGCCTGGGC
CCTCATGGAGTCCAAGATCAAGAACGCCCGGTCGAGAAAGATCGCCAAGG
CCCTGCTCCGACGCGCGGTCGCCCTCAACCCGAAGAAAAACTCGCCGGTG
CTGAGGTGGGCCGTGTTCGACGACCTCGACCGGGTGGTGGAGGCGGCGGG
CGGGGCCGCCGTGCAGGCCGTGCGCTCGGCCCTTTCCCCGGGGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCCGCGGGGAGACCACCCCACGGGATAGAGC
ACTGCCCGAGCTCCGACACCCTCATGCTGGCCTGGGCCCTCATGGAGTCC
AAGATCAAGAACGCCCGGTCGAGAAAGATCGCCAAGGCCCTGCTCCGACG
CGCGGTCGCCCTCAACCCGAAGAAAAACTCGCCGGTGCTGAGGTGGGCCG
TGTTCGACGACCTCGACCGGGTGGTGGAGGCGGCGGGCGGGGCCGCCGTG
CAGGCCGTGCGCTCGGCCCTTTCCCCGGGGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCCGCGGGGAGACCACCCCAGCAGCAGCAGCAGCGGCGGTGGCT
GCAGAAGGACCACCAGAGCCGAGGAGATGGAAGAGCGAGTCTTCGCGACC
GACCTCTTGGAGCTGTGCCGCAGCAACCAAGCCCTCCAAAAGGAAGGAGA
GAGGCAAGAAGAAGAAGAAGTGCGGCAGGAAAACCAAGACCTGCCCGTTG
TTGCCGCCGCGATTGCGCCCGCGGTTGCGCCGGCGGTTGCGCCCTCCCCT
GCCGCCGTCAAGGCTTCGGCGGCGCCGTCTGCCCGGTTCGAAGAGCTGGC
GGAAGAGCTGGAGAGGAGGGGGGGCGGGGTGGAGGGGCGAGGACGCGAGC
TCTGCGGCAGCTGGAAGCTCGTCTTCACGACCTGTACTGAGTGCGACCGC
CTCCTGACCCGGACAGGTCAGCAGCAGCAGCAGCGGCGGTGGCTGCAGAA
GGACCACCAGAGCCGAGGAGATGGAAGAGCGAGTCTTCGCGACCGACCTC
TTGGAGCTGTGCCGCAGCAACCAAGCCCTCCAAAAGGAAGGAGAGAGGCA
AGAAGAAGAAGAAGTGCGGCAGGAAAACCAAGACCTGCCCGTTGTTGCCG
CCGCGATTGCGCCCGCGGTTGCGCCGGCGGTTGCGCCCTCCCCTGCCGCC
GTCAAGGCTTCGGCGGCGCCGTCTGCCCGGTTCGAAGAGCTGGCGGAAGA
GCTGGAGAGGAGGGGGGGCGGGGTGGAGGGGCGAGGACGCGAGCTCTGCG
GCAGCTGGAAGCTCGTCTTCACGACCTGTACTGAGTGCGACCGCCTCCTG
ACCCGGACAGGT
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