mRNA_L-elsbetiae_contig489.12810.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig489.12810.1
Unique NamemRNA_L-elsbetiae_contig489.12810.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig489.12810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig489contigL-elsbetiae_contig489:8662..10287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1050
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig489.12810.1prot_L-elsbetiae_contig489.12810.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig489 8698..9906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.8249822-UTR-L-elsbetiae_contig489:8661..86971622816482.8249822-UTR-L-elsbetiae_contig489:8661..8697Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig489 8662..8697 +
1691683591.9728534-UTR-L-elsbetiae_contig489:8661..86971691683591.9728534-UTR-L-elsbetiae_contig489:8661..8697Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig489 8662..8697 +
1622816482.8614733-UTR-L-elsbetiae_contig489:9906..102871622816482.8614733-UTR-L-elsbetiae_contig489:9906..10287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig489 9907..10287 +
1691683592.0046093-UTR-L-elsbetiae_contig489:9906..102871691683592.0046093-UTR-L-elsbetiae_contig489:9906..10287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig489 9907..10287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.8370593-CDS-L-elsbetiae_contig489:8697..92771622816482.8370593-CDS-L-elsbetiae_contig489:8697..9277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig489 8698..9277 +
1691683591.9833264-CDS-L-elsbetiae_contig489:8697..92771691683591.9833264-CDS-L-elsbetiae_contig489:8697..9277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig489 8698..9277 +
1622816482.8508828-CDS-L-elsbetiae_contig489:9853..99061622816482.8508828-CDS-L-elsbetiae_contig489:9853..9906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig489 9854..9906 +
1691683591.99306-CDS-L-elsbetiae_contig489:9853..99061691683591.99306-CDS-L-elsbetiae_contig489:9853..9906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig489 9854..9906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig489.12810.1

>prot_L-elsbetiae_contig489.12810.1 ID=prot_L-elsbetiae_contig489.12810.1|Name=mRNA_L-elsbetiae_contig489.12810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
MAEVKHKTCTHHGCTKRPSFGKAGGKTEYCRDHAEDAMVGMRSKKRCAHH
GCSKRSSYGKAGIEAGYCSDHAEESMACRSGRSGGDSEMSGDTNGTGRKD
GDGPADRAGSRGRLESRTSLSPTAKASPRGSRKKTNKRTAESANLRPVGV
KREEADNSSVPDDEKSTGRPEPDAVVKTEGVEVPHKVEPKEAAGPASVAR
TKRRKATGGQ*
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mRNA from alignment at L-elsbetiae_contig489:8662..10287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig489.12810.1 ID=mRNA_L-elsbetiae_contig489.12810.1|Name=mRNA_L-elsbetiae_contig489.12810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1626bp|location=Sequence derived from alignment at L-elsbetiae_contig489:8662..10287+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGTACTGCCGTGCCCATGCCGAGGAAGGAGTGATGGCGGAGGTGAA
GCACAAGACATGCACCCACCACGGTTGCACCAAGCGCCCGTCATTCGGCA
AGGCTGGCGGCAAGACAGAATACTGCCGTGACCATGCCGAGGACGCGATG
GTGGGTATGAGGAGCAAGAAAAGATGCGCACACCACGGTTGCAGTAAGCG
GTCATCATACGGCAAGGCTGGCATCGAGGCAGGGTATTGCAGTGACCATG
CAGAGGAAAGCATGGCTTGTCGTTCTGGCCGGTCCGGGGGAGACAGCGAA
ATGAGTGGTGACACAAATGGCACGGGAAGAAAGGACGGCGATGGCCCTGC
TGACCGTGCTGGCTCCCGTGGAAGGCTGGAGAGCCGCACGTCCTTGTCCC
CGACCGCAAAAGCTTCCCCTCGCGGGAGCAGGAAGAAGACCAACAAGCGA
ACTGCCGAAAGCGCAAACTTGCGTCCGGTTGGGGTGAAAAGAGAGGAGGC
CGACAACAGCAGTGTGCCCGACGACGAGAAATCGACGGGACGTCCAGAGC
CAGACGCTGTGGTGAAGACGGAGGGCGTGGAGGTGCCTCACAAGGTGGAG
CCCAAGGAAGCCGCAGGTGCATTGAAAACAAACTTTTGGTTTCTCGGAGT
GCTATTGAACACTCTGTCTGGTTCTTGTACATATATATCGACATAAGAAG
AGAGACAGACACTGATTTGAGAAGGTAGACTATAATAGTTCAACGCGCAA
CACTCGAAGAGCCCTGTAGACACCGCCGATGCAGCACCGAACGGCGAACA
GGTGCAGTAACGAGATGGGATTGACACTTTTACTTGTCTCGATCCGCCGC
TCGCGATGCTATGTTGGAGCTGGAGAGCCACGTGCTACATGCAACACCGT
ATGTGTGCTCCAGAGAAATGTGTGGCACTAACTTCGTGTTCCGTGTTGGA
TCGATTCGCGTTTCGTTTTTCGGTTGTTTTATTTGCGTGGAAATTGAGCT
GCCCTGGATTAACCTGTTAAGTTCGTTAAGTTTTGGTCCACCGCCGGGCC
AGGTTCTGCTCGTATTTAATTTACTTATCAACCGCGGACGTTTATTGTAC
ATCTAGACTATTCCCACCTCATCTGCTTGCCTACCGTTCGGGCGTTGCTC
TTGTGCGGCCGCCCCCCCCGCCCCCTTCTCCCATCAATGCAGGCCCGGCA
AGCGTAGCCAGAACAAAGCGGAGAAAGGCCACAGGGGGGCAATAAGCGCG
AGGTTCTTGATAATGCATTAACAGCAGCCGTACCGTGTGCGCGGCGAACC
GCGGCGGTACAAAGTGGCCACGAGCGCCTAAAAACAGCGAAATCGGTGCC
AGAGCGTTGTTAAAAATGAACGGTCTGCTTTGGTTGGGCGGCATCGGCTG
TCGTACGTGTGGTTTTTCCCTACCGAGCGGCACAAGGGAGCAGGTGTCTT
GTGTATCTACCGGTTTTTCGTGTTCCAGGGTCTATCTATACTGCCATCTT
CTTGCGTAGAGTGCCTCTTTCACTACGCTGTGGTTTCGCCTGACTTTGTG
AAGATGGCGTCTTTCTCGTTGTCCTATTTAGTGTAAATATACAAGGCCTT
GATACACGCTTGAAAATTTCGTCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig489:8662..10287+

>mRNA_L-elsbetiae_contig489.12810.1 ID=mRNA_L-elsbetiae_contig489.12810.1|Name=mRNA_L-elsbetiae_contig489.12810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig489:8662..10287+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGAGGTGAAGCACAAGACATGCACCCACCACGGTTGCACCAAGCG
CCCGTCATTCGGCAAGGCTGGCGGCAAGACAGAATACTGCCGTGACCATG
CCGAGGACGCGATGGTGGGTATGAGGAGCAAGAAAAGATGCGCACACCAC
GGTTGCAGTAAGCGGTCATCATACGGCAAGGCTGGCATCGAGGCAGGGTA
TTGCAGTGACCATGCAGAGGAAAGCATGGCTTGTCGTTCTGGCCGGTCCG
GGGGAGACAGCGAAATGAGTGGTGACACAAATGGCACGGGAAGAAAGGAC
GGCGATGGCCCTGCTGACCGTGCTGGCTCCCGTGGAAGGCTGGAGAGCCG
CACGTCCTTGTCCCCGACCGCAAAAGCTTCCCCTCGCGGGAGCAGGAAGA
AGACCAACAAGCGAACTGCCGAAAGCGCAAACTTGCGTCCGGTTGGGGTG
AAAAGAGAGGAGGCCGACAACAGCAGTGTGCCCGACGACGAGAAATCGAC
GGGACGTCCAGAGCCAGACGCTGTGGTGAAGACGGAGGGCGTGGAGGTGC
CTCACAAGGTGGAGCCCAAGGAAGCCGCAGATGGCGGAGGTGAAGCACAA
GACATGCACCCACCACGGTTGCACCAAGCGCCCGTCATTCGGCAAGGCTG
GCGGCAAGACAGAATACTGCCGTGACCATGCCGAGGACGCGATGGTGGGT
ATGAGGAGCAAGAAAAGATGCGCACACCACGGTTGCAGTAAGCGGTCATC
ATACGGCAAGGCTGGCATCGAGGCAGGGTATTGCAGTGACCATGCAGAGG
AAAGCATGGCTTGTCGTTCTGGCCGGTCCGGGGGAGACAGCGAAATGAGT
GGTGACACAAATGGCACGGGAAGAAAGGACGGCGATGGCCCTGCTGACCG
TGCTGGCTCCCGTGGAAGGCTGGAGAGCCGCACGTCCTTGTCCCCGACCG
CAAAAGCTTCCCCTCGCGGGAGCAGGAAGAAGACCAACAAGCGAACTGCC
GAAAGCGCAAACTTGCGTCCGGTTGGGGTGAAAAGAGAGGAGGCCGACAA
CAGCAGTGTGCCCGACGACGAGAAATCGACGGGACGTCCAGAGCCAGACG
CTGTGGTGAAGACGGAGGGCGTGGAGGTGCCTCACAAGGTGGAGCCCAAG
GAAGCCGCAGGCCCGGCAAGCGTAGCCAGAACAAAGCGGAGAAAGGCCAC
AGGGGGGCAATAAGCCCGGCAAGCGTAGCCAGAACAAAGCGGAGAAAGGC
CACAGGGGGGCAATAA
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