mRNA_L-elsbetiae_contig4877.12793.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4877.12793.1 vs. uniprot
Match: A0A6H5J6K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K8_9PHAE) HSP 1 Score: 154 bits (389), Expect = 3.100e-34 Identity = 296/838 (35.32%), Postives = 374/838 (44.63%), Query Frame = 2 Query: 182 EVQSFCSQSEGCDITGIMEDGFASGEINLSPTLEVDGGYSIRVTDRNTSISGSSFPFDVLPVQSSNSTEIASPEFQDEVGGAAGVGDMGLAMVVVAAVCGLAIACTCLSAGCIACRRR-ATKENTKDLEASTADVEAGAGGGSLHPTTPGKLNESSSSGQRGFSSGQQQQQPLKAHTPG----------GGSGGGSQGQRTPGRXXXXXXXXRRSFGD----------------------SXXXXXXXXXXXXXXXXXXXXXTPGPTIAMGSNQ-RGRSL--------------QRSLTGPQVYGGSSGGSNTPSRSGGHRSVSQLQERPGEFARGNSGHATMTPGRRRSGD---DGR--------GYRRSKSERY--DLSPSAHSFPREDQAGGGSR--------LVGDSEQARRSNSYRRSQSSSARPRSMRDVHDR---DSRSR------SRSRPTTPSRHQGYQSGMPAT----PPDVSWEELRSTHQREKARGGRAGGIRRTFSLP-TYGEAIE---------DDRGPSPSYGPYDAASSKSVT-------PSRRSVRSGGTAGSTRSFASSGRA------------------GVSPSSRAVSARNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ELMGEDTYGESQPSPSETSTVREKIKSFS-RTEET--------------------------------EVKVQEGAEPSSPKAK-------------GKPDTSWLKSGVRGPDTAGGSTP-----------IDAADGTPSAPLPSDPEELAMKKRAFAKHYSKSGSAGDVDEDSVYSPSEISAAAAA 2167 EV ++CS+S GCD+ DG S + +S E GY I VTDR S+SG S F++L S NS+ + PE+QDE GG GVGDM LA+++VA +CG+AI L+ I CRRR A K T D D+E G G L TTPG+ N+ ++S RGFS G PLK T G S G+ XXXXXXXX S TP T++ G + RGR + +RS P+ Y + SRS G S+ R EF RG ++TPGRRR DGR G RRSKSE D S + + ++ SR VG E+ RRS R + ++S R +SM D DS+S+ +RS+ TPSR Q Y++ P P DVSWEELRSTH R K++ +R+T SLP +YG+A++ DDR P PSYGP DA S S PS S +S G+SP +RAVSAR AA XXXXXXXXXXXXXXXXXXXXX E++ S E S+VREKIK FS R+E T E +V+ AE SS AK GKPD SW+K+ VRGPDTAGGST + A P +PSD E+LA+K+RAF K YS+SG++ D EDS YS + +AAAAA Sbjct: 46 EVAAWCSESVGCDVA----DG--SVLVRISANEEAGLGYFIEVTDRILSVSGRSSYFELLEPPS-NSSSVVVPEYQDEAGGT-GVGDMSLALLIVAGICGVAIIAALLAGCFIMCRRRSAEKAKTAD---EAHDLELG---GVLDRTTPGRSNDLNTSEGRGFSMGN----PLKGRTASRSTDADKMSYGASPAGTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQVSATSGSPGAEGAYTPVRSGSSRTPRRTMSSGRHDLRGRQMYDHSVDEGYDGGRGRRSFRSPRAY-------VSRSRSAGR---SRRPPRGDEFDRGER-QLSVTPGRRRPSGISPDGRRSRSPHVLGMRRSKSEGRADDHSQDSARYETVEEDVDASRWEHDGMMPAVGTIERGRRS--QRLAMANSWRSKSMHDTSKLGRLDSKSQYDWEANARSKSATPSR-QTYRNEQPDVDQEFPSDVSWEELRSTHLRNKSKVR----VRKTSSLPPSYGDAMDGGAGGNGSPDDRPPPPSYGPRDANSFTSQLSIGIPDGPSPSSFQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFGLSPGTRAVSARKAARDAQLSAERALAAXXXXXXXXXXXXXXXXXXXXXADEDQEVVMSPRSTSSAGGEVEGSSVREKIKVFSGRSESTGSVDKMGRGSPALPRGRSPYARGLARGWSQADEEEVKARAEQSSANAKEALALMGHSNSSTGKPDNSWVKNEVRGPDTAGGSTNEGGRAVGGDRNLSPAITAPVPAVPSDLEQLAIKRRAFVKQYSQSGTS-DYAEDSDYSVFDNTAAAAA 846
BLAST of mRNA_L-elsbetiae_contig4877.12793.1 vs. uniprot
Match: D7FSX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX2_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 1.030e-14 Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = 2 Query: 242 GFASGEINLSPTL----EVDGGYSIRVTDRNTSISGSSFPFDVLPVQSSNSTEIASPEFQDEVGGAAGVGDMGLAMVVVAAVCGLAIACTCLSAGCIACRRRATKENTKDLEASTADVEAGAGGGSLHPTTPGKLNESSSSGQRGFSSGQQQQQPLKAHT 709 G AS ++ SP E GY + VTDRN+S+SG S F++L QS+ S+ + PE+QDE GG GVGDM LA+++VA VCG+AI L+ I CRRR+ ++ EA ++ GG L TTPG+ N+ ++S RGFS G PLK + Sbjct: 43 GAASRQVATSPMARCCEEPGLGYFVEVTDRNSSVSGRSSFFELLEAQSTPSS-VEVPEYQDEAGGT-GVGDMSLALLIVAGVCGVAIIAALLAVCFIMCRRRSAEKMKTADEAHDLEL-----GGVLGRTTPGRSNDFNTSEGRGFSMGN----PLKGRS 191 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4877.12793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4877.12793.1 >prot_L-elsbetiae_contig4877.12793.1 ID=prot_L-elsbetiae_contig4877.12793.1|Name=mRNA_L-elsbetiae_contig4877.12793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=775bp MVTFNATGDAASGTYDIDLLKGNNEVQSFCSQSEGCDITGIMEDGFASGEback to top mRNA from alignment at L-elsbetiae_contig4877:2126..11953- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4877.12793.1 ID=mRNA_L-elsbetiae_contig4877.12793.1|Name=mRNA_L-elsbetiae_contig4877.12793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9828bp|location=Sequence derived from alignment at L-elsbetiae_contig4877:2126..11953- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4877:2126..11953- >mRNA_L-elsbetiae_contig4877.12793.1 ID=mRNA_L-elsbetiae_contig4877.12793.1|Name=mRNA_L-elsbetiae_contig4877.12793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4650bp|location=Sequence derived from alignment at L-elsbetiae_contig4877:2126..11953- (Laminarionema elsbetiae ELsaHSoW15)back to top |