mRNA_L-elsbetiae_contig4869.12782.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4869.12782.1 vs. uniprot
Match: A0A6H5JZJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ7_9PHAE) HSP 1 Score: 401 bits (1030), Expect = 3.030e-125 Identity = 257/408 (62.99%), Postives = 305/408 (74.75%), Query Frame = 1 Query: 1342 MRQAITARRLANSPPAPSPSKKPKRAGPQLTPKDLAKLAKKQLGTLRKLLDGSGRAYPGPCGAERPVGEIVKFVKKAHSAWMASRQVSSSGVSASQGTKSGGGAMLLAGPPGAGKTTAFLAAAKALTVGVTNVTTLRFVTIKSDTLRADDPNDIFSKVLRAVTTSKASLDGDRALETLRKLTEPSRFFTVFCIEDMHELLGPAALQRLLDVAYRTTSSFAVVYMMSSLDRAIATRFEQGLQRRECRMVHMFPCEEDRLRAILGQSLGASDADDKDGEVVASLVNKAALDTIAKTVARVCGNIRVALTVCEVAFAERLKELEHYIAVAAPEASSSSSSRGAXXXXXXXXXXXXXXXXXXXRGSSNCSPLPSSPTGSV---TASVLLTVAGAKAAINSVMQR*EESSGLG 2556 MRQA+TARRLA SPPAPSP+K+PKRA PQ+T K+L +LA KQL T+R +LDG+ R +PGPCG ERPV ++VKFVKKAH+AW+A Q ++ V A QG G GAM+LAGP G+GK+TAF AAAKA VGV VTTLRFVTIK D L DDPNDIFSKVLR+VT ++ +DG RALE L +L+EPSRF TVF +ED+ + L L+RLLD+AY+ S FAVVYM+ SLDRAI +FEQG++RR+CR++HM PCEEDRLRAILGQSLGAS DDKDGEVVA LVNKAALDTIA VARV G+IRVAL VCEVA R++ELE A+ S XXXXXXXXXXXXXXXXXXX P P+ P + T+SVLLTV GAKAA+N + E+ G G Sbjct: 1 MRQAVTARRLAKSPPAPSPAKRPKRAAPQVTLKELVRLANKQLKTVRGILDGTERPFPGPCGVERPVADVVKFVKKAHNAWLAQLQQRNN-VGALQGMI-GAGAMVLAGPRGSGKSTAFQAAAKASIVGVAKVTTLRFVTIKGDQLNEDDPNDIFSKVLRSVTNAR--MDGKRALEELGRLSEPSRFLTVFAVEDVKQTLSSVTLERLLDLAYKGGSPFAVVYMVPSLDRAIELKFEQGMKRRDCRVIHMMPCEEDRLRAILGQSLGASGPDDKDGEVVAGLVNKAALDTIASVVARVSGSIRVALHVCEVALGNRVRELEKKCIAASSSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPTGPKTAAAVTTSSVLLTVDGAKAALNEFLAWQTETPGKG 404
BLAST of mRNA_L-elsbetiae_contig4869.12782.1 vs. uniprot
Match: D8LKB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB1_ECTSI) HSP 1 Score: 324 bits (830), Expect = 5.930e-95 Identity = 307/574 (53.48%), Postives = 343/574 (59.76%), Query Frame = 1 Query: 1 YLGETPEWEFIEHDEEHLLPFKNNRADLCKQRLGAQLKHQFGPALAAADAMIRQQXXXXXXXXXXXXXXXXXXXPASKAKIAHMNPKRTGVLLDFGTGTSFASFAELWDYLRHNGWATLPGKGLASWYYFPPGSDPKMLSPVLRRDYFDSEDAVIDHVRRTGLERPAPVGAAIPRSSPAPKTRAGSSSRLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPAXKAAKVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKATSNGCTAXXXXXXXAPSAKKGASXXXXXXXXXXXXXXXXXXGNGDGVARLDVHDRSASEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQDRREKE--RNMEPPAVGGKRSHGRSMQVEAAHASSPRG-APNLT-QVMRQAITARRLANSPPAPSPSKKPKRAGPQLTPKDLAKLAKKQLGTLRKLLDGSGRAYPGPCGAERPVGEIVKFVKKAHSAWMASRQVSSSGVSASQGTKSGGGAMLLAGPPGAGKTTAFLAAA 1710 YLGETPEWEFI D+EHLLPFK +R L KQR A +AHMNPKRTGVLLDFGTGTSFASFAELW+YLRHNGWATLPGKGLASW+YFPPGSDPKM PVLRRD+FDSEDAVIDHVRRTGLERPAPVG I RSSP +R GS+ R+S PP + D XXXXXXXXXXXXXXXXXX XXXXXXX XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + R ++ R+ EP AVGGKRSHG++MQVEAA S PRG APNLT QVMRQA+TARRLA SPPAPSPSK+PKRA PQ+ PK+L +LA KQL T+R +LDG+ R +PGPCG ERPV ++VKFVKKAH+AW+A Q ++ V+A QG G GA++LAGP G+GK+TAF AAA Sbjct: 17 YLGETPEWEFIARDDEHLLPFKVHRDRLSKQR----------------------------------------------ASMAHMNPKRTGVLLDFGTGTSFASFAELWNYLRHNGWATLPGKGLASWHYFPPGSDPKMRHPVLRRDFFDSEDAVIDHVRRTGLERPAPVGTVIGRSSPGSTSRPGST-RVS---------------------------------------------DARRSPPPTAPTQADPGKPASGKRKPSSRSGAAVAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGEKGEGAVPSGGGEARRGRPQQGGRDTEPSAVGGKRSHGKTMQVEAALVSPPRGSAPNLTRQVMRQAVTARRLAKSPPAPSPSKRPKRAAPQVAPKELVRLANKQLKTVRGILDGTERPFPGPCGVERPVADVVKFVKKAHNAWLAQLQQRNN-VAALQGMI-GAGAIVLAGPRGSGKSTAFQAAA 496
BLAST of mRNA_L-elsbetiae_contig4869.12782.1 vs. uniprot
Match: A0A6H5JYH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH6_9PHAE) HSP 1 Score: 285 bits (729), Expect = 1.250e-81 Identity = 153/187 (81.82%), Postives = 162/187 (86.63%), Query Frame = 1 Query: 1 YLGETPEWEFIEHDEEHLLPFKNNRADLCKQRLGAQLKHQFGPALAAADAMIRQQXXXXXXXXXXXXXXXXXXXPASKAKIAHMNPKRTGVLLDFGTGTSFASFAELWDYLRHNGWATLPGKGLASWYYFPPGSDPKMLSPVLRRDYFDSEDAVIDHVRRTGLERPAPVGAAIPRSSPAPKTRAGSS 561 YLGETPEWEFI D+EHLLPFK +R LCKQRLGAQLKHQF PALAAAD+M RQQXXXXXXXXXXX P SKA +AHMNPKRTGVLLDFGTGTSFASFAELW+YLRHNGWATLPGKGLASW+YFPPGSDPKM PVLRRD+FDSEDAVIDHVRRTGLERPAPVG I RSSP +R+GSS Sbjct: 70 YLGETPEWEFIARDDEHLLPFKPHRDRLCKQRLGAQLKHQFAPALAAADSMTRQQXXXXXXXXXXXSCATPGT-PVSKASMAHMNPKRTGVLLDFGTGTSFASFAELWNYLRHNGWATLPGKGLASWHYFPPGSDPKMRHPVLRRDFFDSEDAVIDHVRRTGLERPAPVGTVIGRSSPGSTSRSGSS 255 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4869.12782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4869.12782.1 >prot_L-elsbetiae_contig4869.12782.1 ID=prot_L-elsbetiae_contig4869.12782.1|Name=mRNA_L-elsbetiae_contig4869.12782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=845bp YLGETPEWEFIEHDEEHLLPFKNNRADLCKQRLGAQLKHQFGPALAAADAback to top mRNA from alignment at L-elsbetiae_contig4869:967..8927+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4869.12782.1 ID=mRNA_L-elsbetiae_contig4869.12782.1|Name=mRNA_L-elsbetiae_contig4869.12782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7961bp|location=Sequence derived from alignment at L-elsbetiae_contig4869:967..8927+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4869:967..8927+ >mRNA_L-elsbetiae_contig4869.12782.1 ID=mRNA_L-elsbetiae_contig4869.12782.1|Name=mRNA_L-elsbetiae_contig4869.12782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5070bp|location=Sequence derived from alignment at L-elsbetiae_contig4869:967..8927+ (Laminarionema elsbetiae ELsaHSoW15)back to top |