mRNA_L-elsbetiae_contig4866.12779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4866.12779.1 vs. uniprot
Match: A0A6H5L2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U9_9PHAE) HSP 1 Score: 1143 bits (2957), Expect = 0.000e+0 Identity = 794/1449 (54.80%), Postives = 907/1449 (62.59%), Query Frame = 1
Query: 4 NPRELFPVRDDFIRSAWVRRARTERAQEHEELYPYFCNPS---PPANPCDTXXXXXXXXXXXXXXXXXXXAVAVTHQTLLEPATPTAVVSGQ-----PHQHQREPGAPPIKDPGEGAAAAAISTAVPSGDRGHARSRRPQQHMGVGTGPRNVAELRRAFRRLEPEKMFRAPRVEGEPIWAYWGRGGXXXXXXXXXXXXXXXPPLPPGKRASTKDGFVLVPAKELEELRALEGALRKERGILKAHCLLALKEGEVSAHRPLELTRMAIHGACGREMAAALRAYRVWAGRNRGRVNGAQK-----TTP---LVVNKPIAMAAAAGGGKRARKAASKERVAELRRTPAGWRTLRWVMMKRQAELKSQAAEASAMYSEETEQRLKERYLEAWERRHDYDLYCVLAGHFWPLEAEAFRKCTRPGKELFLEIEAPARVIMRMWKTCWPFRKDRRRKGCVGLQALWRGHHVRKRWRPIVRLRVRHGRRSTLRPCFSAWARVARVHRWARRRFEEIEGRWERACFHAWVEWTANLAVEKQRKLERAGRTLRNVAGYRAFRC----------------------------------------------WQLYTRTTRQADRLYARAVGGPAMAVWVRFVDDARRHRRRGGPAVTIQRYARGYQARGRYRATRAIIRGFDRLMSARRARQFLRQALATAHRIAGEELLQAGRDAEITAGVAREEKRLAKMQKDLNAADAAVRRSVTSRLAAGWLPSSASSLLKGGGELRREVKAVREEWKEQEAKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGKTWPRLGFRG-LSRKDNPKDATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRT-----------TEEVGREARRRILRRNRDLARELVAHDFDVRNPPPLTCCAPSCRRTFTQDEHYLAHWGAGGTAEGELPPPRHEKKGATSSQPSSPSAGPPGARPPQPKERDGDGGGARXXXXX------TPS-VGKRGSTTPLG---------------RRPATPTEAGAAEAEAGHPELGGEGVASFHLVVANKAE--GGARRELSGRNGGDEA-TGFGLVSAYITRVWGHGQAYNTLLFVDAVEAWRRRHLTTGPGFVEGAADLRREHVCRGAPREARLPSDTRRELMRVLDTLPDDLVYRAAGGAQDGDDGXXXXXXXXXXKSGNRHDRSAPADKL-----------------------------------------GGPKGTAHSDSSS--------------QAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANPAGLRPTSFDEAQFRALAHLSRVVGPGFWASDLGRRATALHLEDRKQRREAAHEIVRLERKSRLANEAAEIRKQLSRGSDMEREALAHSALEGAFESVLEALLRSAVAGAEMMEMREVK 3888
NPR LFPVRDDFIRSAWVRR RT+RAQE+EELYP F S P N T A A T PAT A Q P +HQR PGAP KD A A A RG ARSRR HMGVGTG N+AELRRAFRRLEPE MFRAPRV+GEPIWAYWG G XXXXXXXXXXXXXX PLPPGKRASTKDGFVLVPAKEL ELRA+EG LRKERG+L AHCL+ EGEVSAHRPLELTRMA+H ACG EMA ALR YR W R+R R +G ++ T P L + + G GK +R AAS+ RVAEL+RTPAGWR+LRWVMMKRQAELKSQA EA+AM++EE EQRLKER+LEAWERRHDYDLYCVLAG FWPLEA FR C+RPG++LFL+IEAPAR DR+RKGC+G Q+LWRG+ VRKRW P++RLRVRHGRRS +RPCFS+WAR+ARV WARRRFEEIEGRWER+CFHAW EWTANLA E+QRKLERAG TLRN+A YR+F WQ Y RTTRQA RLYARAVGG +MA WV++V A+R R + AVTIQR+ARGY AR RYRAT+ II GF+ LM+ARRARQF+RQALA AHR A EELLQ+G DAEITAG+AREEKRLAK+QK++ AADAAVRR+VT RL GWL +S +GGGELRRE +AV+EEWK EA XXXXXX LG WP+ F G L K KD XXXXXXXXXXXXXXX + T E REA RRIL R R LARE++ HDFDVRNPPPLTCCAP C RTFTQ+EHYL+HW A G A+ S+PSSP P P+ ++R +R PS V GST+ + R E EAEAGHPE GG+G+ASFHLVVA+KA+ G S +EA GF LVSAY+TRVWGHGQAYNTLLFVDAV+AWRR P F EGAA+LRRE +C GAPREA LP++TRR+LMR LDTLPDD++ AGG DGD+G G D AP +L GGP+ TA S++ + Q XXXXXXXXXXXXXXXXXXXXXXXX +P GLRPTSFDEAQF+ALAHLSRVVGPGF+ASDLGRRA ALH E+ K+RREAAH+I RLER+SRLANEAAE+R+QLSRG D+E E++A SAL+ A SV+EALLRSAVAGAE++E +E++
Sbjct: 56 NPRALFPVRDDFIRSAWVRRDRTQRAQEYEELYPCFFRRSSTGPLLNDRTTASQT---------------AAAGT------PATRPAARETQAGRLAPDRHQRGPGAPYTKD-----LATAGEAATTPISRGCARSRR---HMGVGTGSGNIAELRRAFRRLEPENMFRAPRVDGEPIWAYWG-DGKXXXXXXXXXXXXXXXPLPPGKRASTKDGFVLVPAKELTELRAIEGVLRKERGVLNAHCLVEFNEGEVSAHRPLELTRMAVHDACGSEMANALREYRAWTARSRSRGDGGREKRGSSTAPRSALTRGNRSTVMSTGGCGKHSRAAASQARVAELQRTPAGWRSLRWVMMKRQAELKSQAMEAAAMFAEEREQRLKERFLEAWERRHDYDLYCVLAGQFWPLEAHVFRACSRPGRKLFLDIEAPAR--------------DRKRKGCLGFQSLWRGYRVRKRWHPVIRLRVRHGRRSIIRPCFSSWARLARVQSWARRRFEEIEGRWERSCFHAWAEWTANLAAERQRKLERAGSTLRNIAAYRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIASLFLPFWNTFWQSYIRTTRQAHRLYARAVGGTSMAAWVQYVGMAKRQRGQKSAAVTIQRHARGYLARSRYRATQTIIHGFNHLMAARRARQFVRQALAAAHRKATEELLQSGYDAEITAGIAREEKRLAKLQKEIKAADAAVRRAVTKRLTGGWLTIRPAS--RGGGELRREARAVQEEWKALEAAQTASAAATATVPGTTPANASVERDSKDGXXXXXX--------LGGAWPKTVFPGRLLGKGRRKDXXXXXXXXXXXXXXXXXXXSRPKAAPAGGEVRGGRTEGAQAPAKAAVPPSSRGGTAEAEREAWRRILARERRLAREIIVHDFDVRNPPPLTCCAPGCGRTFTQNEHYLSHWDAAGAADAARKLLLRHVPDPLLSRPSSP----PLFETPKRQDRGCQKSPSRPTMPTDDQQSVAPSTVSTTGSTSTIAWRQQQLRAPVEQQQLRHGCPAAEEAKLEAEAGHPERGGKGIASFHLVVADKADVRRGXXXXXSEVTDHEEAGAGFDLVSAYVTRVWGHGQAYNTLLFVDAVDAWRRCCPVADPAFAEGAAELRREFLCPGAPREASLPAETRRDLMRTLDTLPDDVLDGTAGGRGDGDEGGDDDAVGGEEVGG---DGRAPDAELPFTDEKRRPETRVDLSDGDEGGRRSISTAGNAATRDSSGGSGGPRATAKSNARTKFSRNKIARPSATRQPQQQRRPVSVPGXXXXXXXXXXXXXXXXXXXXXXXXARDPDGLRPTSFDEAQFQALAHLSRVVGPGFFASDLGRRAAALHQEELKRRREAAHDIARLERRSRLANEAAEVRRQLSRGRDVEIESIAQSALDVASGSVVEALLRSAVAGAEVLETQELE 1443
BLAST of mRNA_L-elsbetiae_contig4866.12779.1 vs. uniprot
Match: D8LGM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM7_ECTSI) HSP 1 Score: 959 bits (2480), Expect = 0.000e+0 Identity = 661/1299 (50.89%), Postives = 752/1299 (57.89%), Query Frame = 1
Query: 406 MGVGTGPRNVAELRRAFRRLEPEKMFRAPRVEGEPIWAYWGRGGXXXXXXXXXXXXXXXPPLPPGKRASTKDGFVLVPAKELEELRALEGALRKERGILKAHCLLALKEGEVSAHRPLELTRMAIHGACGREMAAALRAYRVWAGRNRGRVNGAQKTTPLVVNKPIAMAAAAGGGKRARKAASKERVAELRRTPAGWRTLRWVMMKRQAELKSQAAEASAMYSEETEQRLKERYLEAWERRHDYDLYCVLAGHFWPLEAEAFRKCTRPGKELFLEIEAPARVIMRMWKTCWPFRKDRRRKGCVGLQALWRGHHVRKRWRPIVRLRVRHGRRSTLRPCFSAWARVARVHRWARRRFEEIEGRWERACFHAWVEWTANLAVEKQRKLERAGRTLRNVAGYRAFRCW-------------------------QLYTRTTRQADRLYARAVGGPAMAVWVRFVDDARRHRRRGGPAVTIQRYARGYQARGRYRATRAIIRGFDRLMSARRARQFLRQALATAHRIAGEELLQAGRDAEITAGVAREEKRLAKMQKDLNAADAAVRRSVTSRLAAGWLPSSASSLLKGGGELRREVKAVREEWKEQEAKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGKTWPRLGFRGLS-RKDNPKDATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRT------------------TEEVGREARRRILRRNRDLARELVAHDFDVRNPPPLTCCAPSCRRTFTQDEHYLAHWGAGGTAEGELPPPRHEKKGATSSQPSSPSAGPPGARPPQPKERDGDGGGARXXXXX------TPSVGK-RGSTTPLG------RRPATP---------TEAGAAEAEAGHPELGGEGVASFHLVVANKAEGGARR-------------ELSGRNGGDEATGFGLVSAYITRVWGHGQAYNTLLFVDAVEAWRRRHLTTGPGFVEGAADLRREHVCRGAPREARLPSDTRRELMRVLDTLPDDLVYRAAGGAQDGDDGXXXXXXXXXXKSGNRHDRSAPADKL-------------------------------------------GGPKGTAHSDSSS----------------QAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANPAGLRPTSFDEAQFRALAHLSRVVGPGFWASDLGRRATALHLEDRKQRREAAHEIVRLERKSRLANEAAEIRKQLSRGSDMEREALAHSALEGAFESVLEALLRSAVAGAEMMEMREVK 3888
MGVGTG NVAELRRAFRRLEPE MFRAPRV+GEPIWAYWG G PPLPPGKRASTKDGFVLVPAKEL ELRA+EG LRKERG+L AHCL+ EGE AELKSQA EA+AM++EE EQRLKER+LEAWERRHDYDLYCVLAG FWPLEA+AFR C+RPG++LFLEIEAPARVIMRMW+T WPFRKDR+RKGC+G Q+LWRG+ VRKRW P++RLRVRHGRRS +RPCFS+WAR+ARV WARRRFEEIEGRWER+CFHAW EWTANLA E+QRKLERAGRTLRN+A YR+FR W Q YTRT RQA RLYARAVGG +MA WV++V A+R RR+ AVTIQR+ARGY ARGRYRAT+ IIRGF+RLM+ARRARQFLRQALA AHR+A EELLQ+G DAEIT G+AREEKRLAK+QK++ AADAAVRR+VT RL GWL + +GGGELRRE +AV+EEWK EA XXXXXXXLG T P+ F GL RK PKD T XXXXXXXXXX RT T E REA RRIL R + LARE++ HDFDVRNPPPLTCCAP C RTFTQDEHYLAHW AG A + A S+PSSP P + PQ ++R R PS+G GST+ + R PA E AEAEAGH E GG+G+ASFHLVVA+KA+ RR E++ N + GF LVSAY+TRVWGHGQAYNTLLF+DAV+AWRR P F EGAA+LRRE +C GAPREA LP++TRR+LMR LDTLPDD++ AGG DGD+ G D AP +L GGP+ A S + + Q XXXXXXXXXXXXXXXXXXXXXXXX NP GLRPTSFDEAQF+ALAHLSRVVGPGFWASDLGR A +LH ++ K+RREAA EIVRLER+ RLANEAAE ALLRSAVAGAE++E +E++
Sbjct: 1 MGVGTGSGNVAELRRAFRRLEPENMFRAPRVDGEPIWAYWG-DGKGGRGEGGHAHGQPQPPLPPGKRASTKDGFVLVPAKELTELRAIEGVLRKERGVLNAHCLVEFNEGE-------------------------------------------------------------------------------------------------AELKSQAMEAAAMFAEEREQRLKERFLEAWERRHDYDLYCVLAGQFWPLEAQAFRACSRPGRKLFLEIEAPARVIMRMWRTYWPFRKDRKRKGCLGFQSLWRGYRVRKRWHPVIRLRVRHGRRSIIRPCFSSWARLARVQSWARRRFEEIEGRWERSCFHAWAEWTANLAAERQRKLERAGRTLRNIAAYRSFRSWKAVRSVGVAVALVRLDFEASFRCTSQSYTRTARQAHRLYARAVGGTSMAAWVQYVGMAKRQRRQKSAAVTIQRHARGYLARGRYRATQTIIRGFNRLMAARRARQFLRQALAAAHRMATEELLQSGCDAEITVGIAREEKRLAKLQKEIKAADAAVRRAVTKRLTGGWL--TIRPAFRGGGELRREARAVQEEWKALEA----------AQIAAATTTAPGTTLANASVERDSKDXXXXXXXLGGTLPKTVFPGLLLRKGKPKDITRAARPDGGXXXXXXXXXXRPTTEAEKKAAPASGGVRG-GRTGGAQAPAKACVPPSSRGGTAEAEREAWRRILAREKLLAREIIVHDFDVRNPPPLTCCAPGCGRTFTQDEHYLAHWDAGAAAAAARKLLVRDDPDALLSRPSSP----PFSGTPQRQDRGCQKSPLRPTMPTDDQQSVAPSIGSITGSTSTVAWQQQQLRAPAEQQQLRHGFPAAEEAEAEAEAGHSERGGKGIASFHLVVADKAD--IRRGXXXXXXXXXXXSEIA--NHEEAGAGFDLVSAYVTRVWGHGQAYNTLLFIDAVDAWRRCCPVADPAFAEGAAELRREFLCPGAPREASLPAETRRDLMRTLDTLPDDVLDGTAGGWDDGDESGDDDAGGGEEVGG---DGRAPDAELPFADEKRPRETRVDLDLSDGDEGGRRSIRTAGNAATRDISGGSGGPRAIAKSKAQTKFSRNKIARPSATLQPQQQRRPVSAPGGAXXXXXXXXXXXXXXXXXXXXXXXXARNPHGLRPTSFDEAQFQALAHLSRVVGPGFWASDLGRLAASLHQQELKRRREAAREIVRLERRGRLANEAAE------------------------------ALLRSAVAGAEVLETQELE 1147
BLAST of mRNA_L-elsbetiae_contig4866.12779.1 vs. uniprot
Match: A0A482S9F4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9F4_9ARCH) HSP 1 Score: 87.8 bits (216), Expect = 6.260e-14 Identity = 93/405 (22.96%), Postives = 159/405 (39.26%), Query Frame = 1
Query: 586 PLPPGKRASTKDGFVLVPAKELEELRALEGALRKERGILKAHCLLALKEGEVSAHRPLELTRMAIHGACGREMAAALRAYRVWAGRNRGRVNGA-----QKTTPLVVNKPIAMAAAAGGGKRARKAASKERVAELRRTPAGWRTLRWVMMKRQAELKSQAAEASAMYSEETEQRLKERYLEAWERRHDYDLYCVLAGHFWPLEAEAFRKCTRPGKELFLEIEAPARVIMRMWKTCWPFRKDRRRKGCVGLQALWRGHHVRKRWRPIVRLRVRHGRRSTLRPCFSAWARVARVHRWARRRFEEIEGRWERACFHAWVEWTANLAVEKQRKLERAGRTLRNVAGYRAFRCWQLYTRTTRQADRLYARAVGGPAMAVWVRFVDDARRHRRRGGPAVTIQRYARGYQAR 1785
PLPP + +VL+ L+ L + L++E+ IL+ C + + AH PL TR AIH C +EM+ A Y + ++N A +K + P+ M R + + P R L+ ++K+ + Q + +M E+ Y +A R DY+ Y +LA + P+ E + RPGK + ++ A + +W + K RR + C +Q WR V ++ PI++LR++ G+R+ CF+ W R + R R K+ + +N Y +F W + + R R G P +W+ V + +R A +Q + R + AR
Sbjct: 22 PLPPVHKK-----YVLIEESRLQNLLQFDAVLQREKHILQQQCASVYIDRHMPAHAPLPATRHAIHHLCEQEMSRAR--YEIT------KLNSAWQEHCKKNHYHDSSYPVYM-----------------RKSFVDIAPLAERALKLRLVKQARKEYLQRLDRDSMLYEDGLSFYNNIYHDALLRLKDYERYYILANRYGPMSEEEYFIDARPGKRYYTKVVKGAIKLQLLWDRYYAMAKLRRYRACRMVQKHWRRFIVYRKLHPIIKLRMKFGKRTYFYFCFALWKRYNHLCRTIREAIVYYRSNXXXXXXXXXXXXXXXXXXXXHAKVRKMMIRSQNSGTYNSFHRWVKFLAQNKALKRKLKRYFGFPYFDLWLEHVGWVKHVKRLNIAAKRVQSHIRCFLAR 396 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4866.12779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4866.12779.1 >prot_L-elsbetiae_contig4866.12779.1 ID=prot_L-elsbetiae_contig4866.12779.1|Name=mRNA_L-elsbetiae_contig4866.12779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1298bp RNPRELFPVRDDFIRSAWVRRARTERAQEHEELYPYFCNPSPPANPCDTSback to top mRNA from alignment at L-elsbetiae_contig4866:1740..13261+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4866.12779.1 ID=mRNA_L-elsbetiae_contig4866.12779.1|Name=mRNA_L-elsbetiae_contig4866.12779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11522bp|location=Sequence derived from alignment at L-elsbetiae_contig4866:1740..13261+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4866:1740..13261+ >mRNA_L-elsbetiae_contig4866.12779.1 ID=mRNA_L-elsbetiae_contig4866.12779.1|Name=mRNA_L-elsbetiae_contig4866.12779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7788bp|location=Sequence derived from alignment at L-elsbetiae_contig4866:1740..13261+ (Laminarionema elsbetiae ELsaHSoW15)back to top |