mRNA_L-elsbetiae_contig4858.12766.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4858.12766.1
Unique NamemRNA_L-elsbetiae_contig4858.12766.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4858.12766.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.410e-48
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:  283 MLCPSIVLAKNPNRDGRLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWISESDVFPMPAGDEGLGEEAVEWPVDFS 561
            +L PSIVLAKNPNR G LWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAW+SESD+FPMP+GDEGLG EA EW +DFS
Sbjct:  522 LLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFS 614
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BLAST of mRNA_L-elsbetiae_contig4858.12766.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.770e-26
Identity = 59/93 (63.44%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:  283 MLCPSIVLAKNPNRDGRLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWISESDVFPMPAGDEGLGEEAVEWPVDFS 561
            +L PSIVLAKNPNR G LWPARLCDRDEVEESFAHSDLNAEAQ                        ESD+FPMP+GDEGLG EA EW +DFS
Sbjct:  180 LLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQ------------------------ESDIFPMPSGDEGLGAEAGEWLIDFS 248
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4858.12766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE1.410e-4888.17CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI3.770e-2663.44CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4858contigL-elsbetiae_contig4858:641..5273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog2880.D7G6J0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size565
Cds size561
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4858.12766.1prot_L-elsbetiae_contig4858.12766.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4858 643..5273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816478.1681688-CDS-L-elsbetiae_contig4858:642..7201622816478.1681688-CDS-L-elsbetiae_contig4858:642..720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4858 643..720 -
1691683588.9764323-CDS-L-elsbetiae_contig4858:642..7201691683588.9764323-CDS-L-elsbetiae_contig4858:642..720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4858 643..720 -
1622816478.1830537-CDS-L-elsbetiae_contig4858:2493..25651622816478.1830537-CDS-L-elsbetiae_contig4858:2493..2565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4858 2494..2565 -
1691683588.986708-CDS-L-elsbetiae_contig4858:2493..25651691683588.986708-CDS-L-elsbetiae_contig4858:2493..2565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4858 2494..2565 -
1622816478.1953795-CDS-L-elsbetiae_contig4858:4862..52731622816478.1953795-CDS-L-elsbetiae_contig4858:4862..5273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4858 4863..5273 -
1691683588.997055-CDS-L-elsbetiae_contig4858:4862..52731691683588.997055-CDS-L-elsbetiae_contig4858:4862..5273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4858 4863..5273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4858.12766.1

>prot_L-elsbetiae_contig4858.12766.1 ID=prot_L-elsbetiae_contig4858.12766.1|Name=mRNA_L-elsbetiae_contig4858.12766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
DGGGSGDVGERPRRGSPSPFADAGAAGTAEGPRSQSLQRRMPSPPLLPPG
GGARAGPTTTTTRYPVAASGGQRGGVASDVSAGAGGGAEEERDCMLCPSI
VLAKNPNRDGRLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLC
EGGHHYFAWISESDVFPMPAGDEGLGEEAVEWPVDFS
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mRNA from alignment at L-elsbetiae_contig4858:641..5273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4858.12766.1 ID=mRNA_L-elsbetiae_contig4858.12766.1|Name=mRNA_L-elsbetiae_contig4858.12766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4633bp|location=Sequence derived from alignment at L-elsbetiae_contig4858:641..5273- (Laminarionema elsbetiae ELsaHSoW15)
GACGGCGGCGGCAGCGGCGACGTAGGAGAACGACCAAGGAGGGGGTCGCC
TTCTCCCTTCGCCGATGCCGGAGCGGCAGGAACGGCCGAGGGGCCGCGGT
CGCAGTCCCTGCAGCGGCGGATGCCGTCGCCCCCGTTGCTGCCCCCGGGC
GGGGGGGCTCGAGCGGGGCCGACCACCACCACCACCCGGTACCCCGTCGC
CGCTTCCGGGGGCCAGCGCGGCGGCGTTGCTTCCGACGTCTCGGCGGGCG
CCGGAGGCGGCGCAGAAGAAGAGAGAGACTGCATGCTTTGCCCTTCGATC
GTGCTGGCCAAGAACCCCAACAGGGATGGGCGCCTGTGGCCGGCGCGGCT
GTGCGATAGGGACGAGGTGGAAGAGAGTTTCGCACACTCGGACCTTAACG
CGGAGGCCCAGGTGGGTTTTTGTTGGGCGGGTGGTGGCGGGCGCCCCCCC
CCCCCCCCCCCCCCCCCACATCTTTTAGTTATTACCATATTATTTACGGC
ACTGCTATTCACGACACCGGTGTAGTGACTTCTTAGATACATACGACACC
GGGCATTTCTCAGCGCACATAGCTTGGATCGGCGCAAACGTCAGTGCGTT
GTGACCGCAAGAGGCACAGCTATCAGGTGAACTATCGTTGAGATAAATGC
ACCAAGTGGTTGCCGAGACATGCCGTATCGACTATGGGGCTCACAGCAGT
ACAGGAGGGCAGTGTCGTTGGGCTTATTGACGGCACCGGGCGCAACTCGG
CCCACAGACATCGGATCGACACAAATCCGGATGCGCTGTGATCGTGTGGG
TCACAGCTTATCACGCAAGTTATCCGAGCTGTGTGGGCTGAGAAACAACT
CCGGTCTCGTATAGAAAAGCTCTGTGACACCGCCTTAGTACTTCTGTGGC
CCCTTTATACGGCAGATCTACGCCATCACTTGGTGGATTTGCGTGATCAG
TAGTTTTCCAGATAGCTGTGACTCGTGCGGTCGCAACGCTCTTGGGTTTG
TGCAAATCCGAGCTATGTGGGCCGAGAAACGCCTGGTGTCGTATGGAAGA
AACCACGACACCGGTGTCGTAATAGCAGTGCCGTATTATTTATTGCAGAT
AGTAGATCCAACTAAACTTCCCTTTAGCATTTGTTTTTGTCTTGACATTT
ATTTCCAGTGCTCGATGGGCTCCTTGCCACGAGGGCATCTTGCAAGAGTA
CTAAACCGCATTTAGCCGCACAGAAGGGTTCCTCTCCCCGAGGCCCCCCC
TCCCACCTTCTGCGGTGCTTGCCTAAGATTTTTTATCGTGAGAAGGGTTC
AGCCGTCCCTTGAACTCATCGAAGGTGAGGTCGAAGTTCGTGTACACACG
CTGAGCGTTATCCACTGACAGGGACGGAAGCGAGAGAAAAAACTCGCTCA
GCATGCATTATTTTAGTAAGTTTTCCTCCCTTGTGTACCAAACGTCAGCG
TTTTTCTCTCTCTCTGCACACACACGCCCGACTCCGTGAAAGCGGTTGTT
CCTGGGACACAACTGCTCTGTGGTTGTAGACACACTGATTGGCTAGTCCT
CCCTCGCCATCCCAGACTACAGACAGACAGACACACAGACAGACAGGCAA
GCAGGCAGGCCGACGGACAGACAGTGGCGCAAAATCCGCCACGCGTATCG
TTCGCTGATCATTTTGGTTTTCGAGTTTGCTTGAGATTTTTTGTCTTGAG
TGTAAAGGAGACATAAGGCGGTGCCCCCTTTGAGGCGTTTCTTTGTAACG
CATGTAGCCAACCTTTGATTTTTATCGCTTTGCTGACCCTTCGGGGGTCC
AGCCATTTTCGTACACGTTTTGAAAGGTATAAAGTTGTATGTAGCCTGTG
ACCACGGGAATTGACCGCATCAGGTGTTGGAATAGTACGGACGTGGGGGA
GGGATTGGGTGGAAAGATCGGAACGGTTTTTAATGTGAAGAAGCAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAAAACCAAGCCAAG
GCGCGGCGACAGGTCAACAAGTTTTCCCGTTTTATTGATTTTCTCTTCAT
CGTTGACGGGGATAACGTCACTAAATATCGAAAATTGTTCGGCCGCCAGG
TGTCTTACCATGATCCATGCGTATCCATGTGTACAGCAGCAGCAGCAGCA
GCTGGTTTGATTTACCCAACCTCAACCCCCCCCCCCACGTTTATTGTTTT
TTTTTTTTTTTTGTTTTTTTCATCAGTCATCACTCATTTTATTACCTTCT
TTTCNNNNNNNNNNTTTGTCGGGGGGAAACCAGTTAAAAAAAAAAAATTG
GTGCGGCGGTTTTTTTTCCCCCACCCCCCCCCCCCCCCCCCACGTTTATT
GTTTTTTTTTTTTTTTGAGTCAACCACAAGTCAGAACGCATGTAAAGACC
TCCTTATCCTCCTCTATAAGTCGCTACGTACCTCGAAGCATGCATATACA
TATAAAACCTTCTTGAGTGGGGAGCGCTTTTTCTCGGAACGCCTGCCTGC
TTTTGCCTCCCCGCGAGAACTCCCGAAATAACCCTTTTTAAGTCACGGCC
GCAAGACCCCTCTCGCCCTTGCCGAAGCCCCCGACAACCCTCCTTGGTTT
GGTACATATATACCGCAACAGCAAGTTCGACGGTTCTACTCTGCCGCCTT
TCGCTTCTACGGCTCTCCCTTTCTTCCTCTCTTTCTCTTGTTGTTGGCCT
TCCTGCAGGCGCACCGTGCGCTTCGAGCTCTGTTGGTGTTTCTGTGCGAG
GGCGGCCACCACTACTTTGCCTGGATCTCGGTGAGGAGTATGTACCTGTA
CAACACCGCATATGTACACACGTAAACCGCCCACAATCTAACACACCCCG
GTGGGAAACATCTTGAAGCTCAAAAACCCTCATCACTCTTCATATATCAC
CGGGTGTGTGTTGATTCTGGGAGCTTAAAACCTAATTGTGGGCGTGTTTA
ATAAATAGTCTTGTGTGTGGCACATATGCAGTAGGTGCACGTGTTGTTGT
TGGGTATGGTATGGTAGCTGGAGGAGGGGGAGCGCAGGCGGCCCCGTTCC
TGTTGGGGTGCCTGCGATTTTCCGCTGCTGGTTGGTGCCTTGCGTGTGCT
GTTGTCTCGGCTTCTGCGGGGTATCTATCGGTAAATAGCGGCGAGACTTT
GGGAAACCGAACGGGCAAGTGGCAGCCTAGCCGCGTGTCCGACTTTTGTC
ACCACCGGGCTCGAGCAACGCCTGGCTGTGGTACATGCATGCGTAACACC
CTCCTCGAAGTACGGAAAACCACCCGCCCGTGTAGGGCGCCCGCCGGCTC
TGCGCTATAGATATACCGTTACAAAACAGCCCTCCTGCCAGAAGTGGCAA
ACTCGAACTCGTTCGGGTTTGAGTACAATATACCACGTGTCAGAAACGGT
AAAATCGTGAAACCGTTTTAGGGTTGAGCACCACGCGCCAGAAACGGCGA
CATCATCGAGACTGCTGTTATGGCGAAGTAAGGCTGTTTATCTACTGCTA
TGACATACTTTCGTACGTACATACATGCATACCATCCATGTCAGCCGCTT
TGAGCCCTTTGGCGGGCGCGAGCCCCAAGCCCGCCGAGGAACGAGACGCG
CGCGAGAGCAACAACGCACAGCGCCCCGCCACGCCTGGACCCACCCTTTG
TGCCGCTACTACTACTAGCGTCAAGCACGGGAGGGTTTTCCTCTCCCCGT
CCGACTTCCAGCTTCCAGCCATTGCTTCTTGCTTTTGGTTTCGGTTTGGT
TCGGTTCGGGGAGGGGGGTGTGGTTGCGCTTCACCGGCTTTGATTACACC
GCCCGGGGCGAGGAAACCCCCGGTTCGGCCGCAGGTCGGCGATACAATCG
TATTTCTTACTTTAGGAGTTACCAAACCACCACGTAGCAAACGCTCATCG
TAGTCTCCTACTTTCTCAGGGTTGATGAAAAAAATCCTTTTGTGGGGTGG
GGGGGGGCACACGCTGAGTTCGTGCTCCTTTCTATTCTACATACACCTTA
TTTCCAAGGTGTTTTTTTTTTTACTTCATTCCGCAGCTCTGCTGTATTCA
ATGGAGTGATGTCGGCAAGGGTTTTTAAGTTGTGGTTTAGCTAGTCCCAA
TGATCATCACCAATGATAAAACAGCGAGGTGCCGCTTCAAGTGTCTCTCG
GCAATCTTGCAGCTTCCGGTGCTCTCTTTGATCCCTTTGGTGTTTTCTGG
GAGCGTTTTCTTCGAAAGGACCTTTTTTTTTTCAGTAAATCAGTAAATCA
AAGAAATAACCTCCCCACAAGAGACGCAGGGGACTCCGTGATGAATTGAA
TCGACATTTCGATACAGAAGTGATGTGATACTGTGCCGGGATGGATAACT
TATCGTGATCGTTCCATCTCCGTTTTGTTTTTTGATTGAAAAGAAGTAGG
GAAATCAAGAGACGGTACAATACTCTTGCAGAAACATGATGTATGTTCAA
CGCGGGTGATTGGTGTATCAACGGTCCGTGGGAGTAGAAAAACACCTAAA
ATGTGTCACGCGCGCGCACGCGCGCGCTTGGGCGGCTGCTTTTTTGAAAA
AAGGAATCGGACGTTTTCCCGATGCCGGCGGGGGACGAGGGCCTCGGCGA
GGAAGCCGTGGAGTGGCCGGTCGACTTCTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4858:641..5273-

>mRNA_L-elsbetiae_contig4858.12766.1 ID=mRNA_L-elsbetiae_contig4858.12766.1|Name=mRNA_L-elsbetiae_contig4858.12766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig4858:641..5273- (Laminarionema elsbetiae ELsaHSoW15)
GACGGCGGCGGCAGCGGCGACGTAGGAGAACGACCAAGGAGGGGGTCGCC
TTCTCCCTTCGCCGATGCCGGAGCGGCAGGAACGGCCGAGGGGCCGCGGT
CGCAGTCCCTGCAGCGGCGGATGCCGTCGCCCCCGTTGCTGCCCCCGGGC
GGGGGGGCTCGAGCGGGGCCGACCACCACCACCACCCGGTACCCCGTCGC
CGCTTCCGGGGGCCAGCGCGGCGGCGTTGCTTCCGACGTCTCGGCGGGCG
CCGGAGGCGGCGCAGAAGAAGAGAGAGACTGCATGCTTTGCCCTTCGATC
GTGCTGGCCAAGAACCCCAACAGGGATGGGCGCCTGTGGCCGGCGCGGCT
GTGCGATAGGGACGAGGTGGAAGAGAGTTTCGCACACTCGGACCTTAACG
CGGAGGCCCAGGACGGCGGCGGCAGCGGCGACGTAGGAGAACGACCAAGG
AGGGGGTCGCCTTCTCCCTTCGCCGATGCCGGAGCGGCAGGAACGGCCGA
GGGGCCGCGGTCGCAGTCCCTGCAGCGGCGGATGCCGTCGCCCCCGTTGC
TGCCCCCGGGCGGGGGGGCTCGAGCGGGGCCGACCACCACCACCACCCGG
TACCCCGTCGCCGCTTCCGGGGGCCAGCGCGGCGGCGTTGCTTCCGACGT
CTCGGCGGGCGCCGGAGGCGGCGCAGAAGAAGAGAGAGACTGCATGCTTT
GCCCTTCGATCGTGCTGGCCAAGAACCCCAACAGGGATGGGCGCCTGTGG
CCGGCGCGGCTGTGCGATAGGGACGAGGTGGAAGAGAGTTTCGCACACTC
GGACCTTAACGCGGAGGCCCAGGCGCACCGTGCGCTTCGAGCTCTGTTGG
TGTTTCTGTGCGAGGGCGGCCACCACTACTTTGCCTGGATCTCGGCGCAC
CGTGCGCTTCGAGCTCTGTTGGTGTTTCTGTGCGAGGGCGGCCACCACTA
CTTTGCCTGGATCTCGGAATCGGACGTTTTCCCGATGCCGGCGGGGGACG
AGGGCCTCGGCGAGGAAGCCGTGGAGTGGCCGGTCGACTTCTCGGAATCG
GACGTTTTCCCGATGCCGGCGGGGGACGAGGGCCTCGGCGAGGAAGCCGT
GGAGTGGCCGGTCGACTTCTCG
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