mRNA_L-elsbetiae_contig4855.12762.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4855.12762.1
Unique NamemRNA_L-elsbetiae_contig4855.12762.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4855.12762.1 vs. uniprot
Match: A0A6H5JSB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.570e-24
Identity = 62/137 (45.26%), Postives = 79/137 (57.66%), Query Frame = 3 
Query:   87 EGHVSGGVEMVRVEKFVIDHEVYISSASCFCSACREGCYDECFVRASYPALVPKRVLGVVEETVTLDTGVDPAHVGAVVG----------------DSIKQVKGVTFGKRQNARVMQRITGTEVEKSLLEQSR*GGE 449
            E  V  GVE V VEK  +DHEVY S +SCFCSACR   YD+CFV A YPALVPK  L VVEE V +DTGVDP      V                 D+ K+ + + F K+ +  +MQR+TGT+ E+  +++   G E
Sbjct:  632 EEEVVSGVETVSVEKRTVDHEVYTSQSSCFCSACRVRGYDKCFVFAKYPALVPKLQLSVVEEKVVMDTGVDPVGAEEKVXXXXXXXXXXXXXXXEVDARKEKQEIKFRKKSSVCLMQRVTGTQFEEKYIKKLEEGEE 768
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BLAST of mRNA_L-elsbetiae_contig4855.12762.1 vs. uniprot
Match: A0A6H5JI78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI78_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 9.540e-22
Identity = 57/105 (54.29%), Postives = 71/105 (67.62%), Query Frame = 3 
Query:   87 EGHVSGGVEMVRVEKFVIDHEVYISSASCFCSACREGCYDECFVRASYPALVPKRVLGVVEETVTLDTGVDPAHVGAVVGDSIKQVKGVTFGKRQNARVMQRITG 401
            EG VSG +E VRVEK + DHEVY S ASCFCSAC+   YD+CFV A YP LVPK  L VV+E V +DTGVD   +   V D  K+ K + F K+ +  ++QR+TG
Sbjct:  847 EGAVSG-LETVRVEKRIADHEVYTSPASCFCSACQVRDYDKCFVFAKYPTLVPKLQLSVVQEKVIMDTGVDTVGLDGEV-DGRKKKKEIKFRKKSSVCLLQRVTG 949
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4855.12762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSB4_9PHAE3.570e-2445.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI78_9PHAE9.540e-2254.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4855contigL-elsbetiae_contig4855:2056..2622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4855.12762.1prot_L-elsbetiae_contig4855.12762.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4855 2169..2495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816477.899202-UTR-L-elsbetiae_contig4855:2055..21681622816477.899202-UTR-L-elsbetiae_contig4855:2055..2168Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4855 2056..2168 +
1691683588.7862134-UTR-L-elsbetiae_contig4855:2055..21681691683588.7862134-UTR-L-elsbetiae_contig4855:2055..2168Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4855 2056..2168 +
1622816477.924507-UTR-L-elsbetiae_contig4855:2495..26221622816477.924507-UTR-L-elsbetiae_contig4855:2495..2622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4855 2496..2622 +
1691683588.810643-UTR-L-elsbetiae_contig4855:2495..26221691683588.810643-UTR-L-elsbetiae_contig4855:2495..2622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4855 2496..2622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816477.9109478-CDS-L-elsbetiae_contig4855:2168..24951622816477.9109478-CDS-L-elsbetiae_contig4855:2168..2495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4855 2169..2495 +
1691683588.7990682-CDS-L-elsbetiae_contig4855:2168..24951691683588.7990682-CDS-L-elsbetiae_contig4855:2168..2495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4855 2169..2495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4855.12762.1

>prot_L-elsbetiae_contig4855.12762.1 ID=prot_L-elsbetiae_contig4855.12762.1|Name=mRNA_L-elsbetiae_contig4855.12762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MVRVEKFVIDHEVYISSASCFCSACREGCYDECFVRASYPALVPKRVLGV
VEETVTLDTGVDPAHVGAVVGDSIKQVKGVTFGKRQNARVMQRITGTEVE
KSLLEQSR*
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mRNA from alignment at L-elsbetiae_contig4855:2056..2622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4855.12762.1 ID=mRNA_L-elsbetiae_contig4855.12762.1|Name=mRNA_L-elsbetiae_contig4855.12762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=567bp|location=Sequence derived from alignment at L-elsbetiae_contig4855:2056..2622+ (Laminarionema elsbetiae ELsaHSoW15)
GCGACTTTTCGTCGTCGTCTGAGGGGGAGGATGGCTCACAGTCCGAAGTA
GAGTCTTCGGAGGAAGAGGCTGAGAACGTCGAAAGCGAGGGCCACGTGTC
GGGGGGGGTAGAGATGGTTCGTGTCGAGAAGTTTGTCATCGACCACGAGG
TCTACATCTCTTCGGCGTCTTGTTTTTGCTCGGCCTGTCGAGAGGGTTGC
TACGATGAATGTTTTGTGCGCGCCTCGTACCCGGCTCTTGTCCCGAAGCG
TGTATTGGGGGTAGTTGAGGAGACAGTCACGCTGGACACTGGAGTAGACC
CCGCTCATGTGGGTGCAGTGGTCGGTGACAGCATAAAACAGGTGAAGGGG
GTCACCTTCGGCAAGAGGCAGAATGCCCGAGTGATGCAGAGGATCACCGG
GACAGAAGTTGAGAAATCCTTGCTGGAACAGAGTAGGTAAGGCGGTGAGA
GCGGGCTCCGAGTCGTGTGGTAGATTTCTGGTCCGGATTTTGTTTTTTCG
TGTGCAAAGATATGTGTTCAGGTGCTTGCAACTTTAAGATTCATGCCCTT
GGTTTCCTCTCAGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4855:2056..2622+

>mRNA_L-elsbetiae_contig4855.12762.1 ID=mRNA_L-elsbetiae_contig4855.12762.1|Name=mRNA_L-elsbetiae_contig4855.12762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig4855:2056..2622+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCGTGTCGAGAAGTTTGTCATCGACCACGAGGTCTACATCTCTTC
GGCGTCTTGTTTTTGCTCGGCCTGTCGAGAGGGTTGCTACGATGAATGTT
TTGTGCGCGCCTCGTACCCGGCTCTTGTCCCGAAGCGTGTATTGGGGGTA
GTTGAGGAGACAGTCACGCTGGACACTGGAGTAGACCCCGCTCATGTGGG
TGCAGTGGTCGGTGACAGCATAAAACAGGTGAAGGGGGTCACCTTCGGCA
AGAGGCAGAATGCCCGAGTGATGCAGAGGATCACCGGGACAGAAGTTGAG
AAATCCTTGCTGGAACAGAGTAGGTAAATGGTTCGTGTCGAGAAGTTTGT
CATCGACCACGAGGTCTACATCTCTTCGGCGTCTTGTTTTTGCTCGGCCT
GTCGAGAGGGTTGCTACGATGAATGTTTTGTGCGCGCCTCGTACCCGGCT
CTTGTCCCGAAGCGTGTATTGGGGGTAGTTGAGGAGACAGTCACGCTGGA
CACTGGAGTAGACCCCGCTCATGTGGGTGCAGTGGTCGGTGACAGCATAA
AACAGGTGAAGGGGGTCACCTTCGGCAAGAGGCAGAATGCCCGAGTGATG
CAGAGGATCACCGGGACAGAAGTTGAGAAATCCTTGCTGGAACAGAGTAG
GTAA
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