mRNA_L-elsbetiae_contig485.12757.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig485.12757.1 vs. uniprot
Match: D8LTM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM0_ECTSI) HSP 1 Score: 221 bits (562), Expect = 1.580e-56 Identity = 121/229 (52.84%), Postives = 150/229 (65.50%), Query Frame = 1 Query: 19 VFLVPKGLTYWLNGVSGYNCLGFKVAMGACLSTSNALTFIHLFIFSNSLLAHQTSTRWTHLRWLGLILTAFYWGALVVAEATRTASELXXXXXXXXXXXXXASPCADTATDDARCLSHVDDAAFSVKWVAQLLNHMFQAAAYLLPLRSQVSGAAK-IRLVSGGAAGPSSYRRTLGLPVWQSIISESVSLVMTTVVAALAFAKAQGRLDAMPMFAVEVLDNAANLAAIFY 702 +FL GL YW NG+ GY+CL F MGA LS SNA+ FIHLFI SNS+ H+ ++RW H RWLG+I+T F+W ALV E TRTA + CA ++RC++ VD A +VKWVAQLLN +FQ A+L+PLR V+GAA +RL SGG S R+ L + VWQ+IISE +SLVMT VA +A AKA+G L P+FAVEVLDN NLAAIFY Sbjct: 56 LFLCLNGLAYWFNGIGGYDCLAFSTVMGASLSASNAMAFIHLFILSNSM--HRANSRWKHFRWLGVIITVFHWVALVALEGTRTAGK------------EEHGGCA----GESRCVTDVDGLALAVKWVAQLLNQLFQTVAFLVPLRMPVAGAANGVRLFSGGLKATGSCRKCLNISVWQTIISEGLSLVMTITVAGIALAKAKGGLGNTPVFAVEVLDNIVNLAAIFY 266
BLAST of mRNA_L-elsbetiae_contig485.12757.1 vs. uniprot
Match: A0A6H5JF49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF49_9PHAE) HSP 1 Score: 144 bits (364), Expect = 7.590e-32 Identity = 79/177 (44.63%), Postives = 102/177 (57.63%), Query Frame = 1 Query: 16 AVFLVPKGLTYWLNGVSGYNCLGFKVAMGACLSTSNALTFIHLFIFSNSLLAHQTSTRWTHLRWLGLILTAFYWGALVVAEATRTASELXXXXXXXXXXXXXASPCADTATDDARCLSHVDDAAFSVKWVAQLLNHMFQAAAYLLPLRSQVSGAAK-IRLVSGGAAGPSSYRRTLGL 543 A L GL YW NG+ GY+C F MGA LS SNA+ FIHLFI SNS+ H+ ++RW H RW G+I+ F+W ALV E TRTA + CA ++RC++ VD A +VKW+ QLLN MFQ A+L+PLR + AA +RL SGG S R+ L + Sbjct: 12 APLLAFTGLAYWFNGIGGYDCFAFSTIMGASLSASNAMGFIHLFILSNSM--HRANSRWKHFRWFGVIIMVFHWVALVALEGTRTAGK------------EERGGCA----GESRCVTDVDGLALTVKWIMQLLNQMFQTVAFLVPLRMPAAEAANGVRLFSGGLKATGSCRKCLNI 170 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig485.12757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig485.12757.1 >prot_L-elsbetiae_contig485.12757.1 ID=prot_L-elsbetiae_contig485.12757.1|Name=mRNA_L-elsbetiae_contig485.12757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=944bp MGGGGAVFLVPKGLTYWLNGVSGYNCLGFKVAMGACLSTSNALTFIHLFIback to top mRNA from alignment at L-elsbetiae_contig485:23022..31211- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig485.12757.1 ID=mRNA_L-elsbetiae_contig485.12757.1|Name=mRNA_L-elsbetiae_contig485.12757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8190bp|location=Sequence derived from alignment at L-elsbetiae_contig485:23022..31211- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig485:23022..31211- >mRNA_L-elsbetiae_contig485.12757.1 ID=mRNA_L-elsbetiae_contig485.12757.1|Name=mRNA_L-elsbetiae_contig485.12757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5664bp|location=Sequence derived from alignment at L-elsbetiae_contig485:23022..31211- (Laminarionema elsbetiae ELsaHSoW15)back to top |