mRNA_L-elsbetiae_contig4847.12752.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4847.12752.1
Unique NamemRNA_L-elsbetiae_contig4847.12752.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4847.12752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4847contigL-elsbetiae_contig4847:6842..7413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size574
Cds size558
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816476.7487407-UTR-L-elsbetiae_contig4847:6841..68551622816476.7487407-UTR-L-elsbetiae_contig4847:6841..6855Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4847 6842..6855 +
1691683587.9512367-UTR-L-elsbetiae_contig4847:6841..68551691683587.9512367-UTR-L-elsbetiae_contig4847:6841..6855Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4847 6842..6855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816476.7598805-CDS-L-elsbetiae_contig4847:6855..74131622816476.7598805-CDS-L-elsbetiae_contig4847:6855..7413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4847 6856..7413 +
1691683587.9657438-CDS-L-elsbetiae_contig4847:6855..74131691683587.9657438-CDS-L-elsbetiae_contig4847:6855..7413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4847 6856..7413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4847.12752.1prot_L-elsbetiae_contig4847.12752.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4847 6856..7413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4847.12752.1

>prot_L-elsbetiae_contig4847.12752.1 ID=prot_L-elsbetiae_contig4847.12752.1|Name=mRNA_L-elsbetiae_contig4847.12752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=186bp
MGGSPPATGALIAAAAAAGGGGGGAQRYQQQASVGSRAWAGVVNTVEMAV
LSDTDDPTDSESGSDSEAEYDDDNGGGGDSNGGSPIFGGGDGGVSGGGGG
GLVADTSTLQHKSQTPATTVAAAAAAAAAGPSSSPPPVARLRGGGGGSGD
DDSDDTGAKDMMAWRDGEQADGWSLVVSEQGDADAD
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mRNA from alignment at L-elsbetiae_contig4847:6842..7413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4847.12752.1 ID=mRNA_L-elsbetiae_contig4847.12752.1|Name=mRNA_L-elsbetiae_contig4847.12752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=572bp|location=Sequence derived from alignment at L-elsbetiae_contig4847:6842..7413+ (Laminarionema elsbetiae ELsaHSoW15)
GACGGCCGGCTGTGATGGGGGGTAGCCCTCCTGCGACGGGCGCGCTGATA
GCGGCGGCGGCGGCGGCCGGCGGCGGCGGCGGCGGCGCACAGCGATACCA
ACAGCAGGCGAGCGTGGGGTCGCGCGCGTGGGCGGGAGTGGTTAACACCG
TCGAAATGGCGGTTTTATCCGACACGGACGACCCAACAGATTCGGAATCG
GGCTCTGATTCGGAGGCCGAGTATGACGACGATAACGGCGGCGGTGGCGA
CAGTAACGGGGGTAGCCCGATTTTTGGCGGCGGGGACGGCGGTGTCAGCG
GAGGGGGTGGCGGCGGGCTTGTCGCGGACACGTCGACGCTCCAACACAAA
AGCCAGACTCCCGCTACTACCGTAGCTGCTGCAGCAGCTGCTGCTGCTGC
CGGCCCATCTTCGTCGCCCCCCCCCGTTGCGCGGCTGAGGGGCGGGGGGG
GGGGATCCGGCGACGACGACTCCGATGATACCGGCGCGAAGGACATGATG
GCGTGGCGGGACGGGGAGCAAGCCGACGGGTGGAGCCTCGTGGTATCTGA
GCAGGGAGACGCAGACGCAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4847:6842..7413+

>mRNA_L-elsbetiae_contig4847.12752.1 ID=mRNA_L-elsbetiae_contig4847.12752.1|Name=mRNA_L-elsbetiae_contig4847.12752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig4847:6842..7413+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGGTAGCCCTCCTGCGACGGGCGCGCTGATAGCGGCGGCGGCGGC
GGCCGGCGGCGGCGGCGGCGGCGCACAGCGATACCAACAGCAGGCGAGCG
TGGGGTCGCGCGCGTGGGCGGGAGTGGTTAACACCGTCGAAATGGCGGTT
TTATCCGACACGGACGACCCAACAGATTCGGAATCGGGCTCTGATTCGGA
GGCCGAGTATGACGACGATAACGGCGGCGGTGGCGACAGTAACGGGGGTA
GCCCGATTTTTGGCGGCGGGGACGGCGGTGTCAGCGGAGGGGGTGGCGGC
GGGCTTGTCGCGGACACGTCGACGCTCCAACACAAAAGCCAGACTCCCGC
TACTACCGTAGCTGCTGCAGCAGCTGCTGCTGCTGCCGGCCCATCTTCGT
CGCCCCCCCCCGTTGCGCGGCTGAGGGGCGGGGGGGGGGGATCCGGCGAC
GACGACTCCGATGATACCGGCGCGAAGGACATGATGGCGTGGCGGGACGG
GGAGCAAGCCGACGGGTGGAGCCTCGTGGTATCTGAGCAGGGAGACGCAG
ACGCAGACATGGGGGGTAGCCCTCCTGCGACGGGCGCGCTGATAGCGGCG
GCGGCGGCGGCCGGCGGCGGCGGCGGCGGCGCACAGCGATACCAACAGCA
GGCGAGCGTGGGGTCGCGCGCGTGGGCGGGAGTGGTTAACACCGTCGAAA
TGGCGGTTTTATCCGACACGGACGACCCAACAGATTCGGAATCGGGCTCT
GATTCGGAGGCCGAGTATGACGACGATAACGGCGGCGGTGGCGACAGTAA
CGGGGGTAGCCCGATTTTTGGCGGCGGGGACGGCGGTGTCAGCGGAGGGG
GTGGCGGCGGGCTTGTCGCGGACACGTCGACGCTCCAACACAAAAGCCAG
ACTCCCGCTACTACCGTAGCTGCTGCAGCAGCTGCTGCTGCTGCCGGCCC
ATCTTCGTCGCCCCCCCCCGTTGCGCGGCTGAGGGGCGGGGGGGGGGGAT
CCGGCGACGACGACTCCGATGATACCGGCGCGAAGGACATGATGGCGTGG
CGGGACGGGGAGCAAGCCGACGGGTGGAGCCTCGTGGTATCTGAGCAGGG
AGACGCAGACGCAGAC
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