mRNA_L-elsbetiae_contig4843.12748.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4843.12748.1
Unique NamemRNA_L-elsbetiae_contig4843.12748.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4843.12748.1 vs. uniprot
Match: D7FHU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU4_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.190e-45
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:  544 MVVGRRRSFGERENKKDGLVTDIYEEPARGMPNVWCMTVNNTRCVRLVGRCGWGTWRIANGVDNSWVAAWDAKYGYSTPAT 786
            MVVGRRRSFGERENKKDGLVTDIY+EPARGMPN+WCMTVNNT CVRLVGRCGWGTWRIANGVD   VAAWDAK GYSTPAT
Sbjct:    1 MVVGRRRSFGERENKKDGLVTDIYDEPARGMPNLWCMTVNNT-CVRLVGRCGWGTWRIANGVDYDVVAAWDAKDGYSTPAT 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4843.12748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHU4_ECTSI1.190e-4591.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4843contigL-elsbetiae_contig4843:7519..11341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size826
Cds size282
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816476.450239-UTR-L-elsbetiae_contig4843:7518..75711622816476.450239-UTR-L-elsbetiae_contig4843:7518..7571Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 7519..7571 +
1691683587.7514882-UTR-L-elsbetiae_contig4843:7518..75711691683587.7514882-UTR-L-elsbetiae_contig4843:7518..7571Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 7519..7571 +
1622816476.4641743-UTR-L-elsbetiae_contig4843:7856..79581622816476.4641743-UTR-L-elsbetiae_contig4843:7856..7958Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 7857..7958 +
1691683587.760602-UTR-L-elsbetiae_contig4843:7856..79581691683587.760602-UTR-L-elsbetiae_contig4843:7856..7958Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 7857..7958 +
1622816476.47444-UTR-L-elsbetiae_contig4843:8679..87661622816476.47444-UTR-L-elsbetiae_contig4843:8679..8766Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 8680..8766 +
1691683587.7694051-UTR-L-elsbetiae_contig4843:8679..87661691683587.7694051-UTR-L-elsbetiae_contig4843:8679..8766Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 8680..8766 +
1622816476.4902806-UTR-L-elsbetiae_contig4843:9076..91641622816476.4902806-UTR-L-elsbetiae_contig4843:9076..9164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 9077..9164 +
1691683587.7787766-UTR-L-elsbetiae_contig4843:9076..91641691683587.7787766-UTR-L-elsbetiae_contig4843:9076..9164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 9077..9164 +
1622816476.5072134-UTR-L-elsbetiae_contig4843:9578..96751622816476.5072134-UTR-L-elsbetiae_contig4843:9578..9675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 9579..9675 +
1691683587.7898557-UTR-L-elsbetiae_contig4843:9578..96751691683587.7898557-UTR-L-elsbetiae_contig4843:9578..9675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 9579..9675 +
1622816476.5210733-UTR-L-elsbetiae_contig4843:9932..100481622816476.5210733-UTR-L-elsbetiae_contig4843:9932..10048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 9933..10048 +
1691683587.8040981-UTR-L-elsbetiae_contig4843:9932..100481691683587.8040981-UTR-L-elsbetiae_contig4843:9932..10048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4843 9933..10048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816476.5319428-CDS-L-elsbetiae_contig4843:10048..100851622816476.5319428-CDS-L-elsbetiae_contig4843:10048..10085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 10049..10085 +
1691683587.815639-CDS-L-elsbetiae_contig4843:10048..100851691683587.815639-CDS-L-elsbetiae_contig4843:10048..10085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 10049..10085 +
1622816476.5425303-CDS-L-elsbetiae_contig4843:10334..105561622816476.5425303-CDS-L-elsbetiae_contig4843:10334..10556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 10335..10556 +
1691683587.8264115-CDS-L-elsbetiae_contig4843:10334..105561691683587.8264115-CDS-L-elsbetiae_contig4843:10334..10556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 10335..10556 +
1622816476.5534751-CDS-L-elsbetiae_contig4843:11318..113411622816476.5534751-CDS-L-elsbetiae_contig4843:11318..11341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 11319..11341 +
1691683587.8372118-CDS-L-elsbetiae_contig4843:11318..113411691683587.8372118-CDS-L-elsbetiae_contig4843:11318..11341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 11319..11341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4843.12748.1prot_L-elsbetiae_contig4843.12748.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4843 10049..11341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4843.12748.1

>prot_L-elsbetiae_contig4843.12748.1 ID=prot_L-elsbetiae_contig4843.12748.1|Name=mRNA_L-elsbetiae_contig4843.12748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MVVGRRRSFGERENKKDGLVTDIYEEPARGMPNVWCMTVNNTRCVRLVGR
CGWGTWRIANGVDNSWVAAWDAKYGYSTPATVPNLAGWETPKYR
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mRNA from alignment at L-elsbetiae_contig4843:7519..11341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4843.12748.1 ID=mRNA_L-elsbetiae_contig4843.12748.1|Name=mRNA_L-elsbetiae_contig4843.12748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3823bp|location=Sequence derived from alignment at L-elsbetiae_contig4843:7519..11341+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGAGCGCCTGTAACCTATGGTCGGTTCTTGCTGTTGATTGGAGGATA
ACGGTGAGAGCCCTTACTGTCAAGGACCGTGTGTCTCGTTGAAGAGCGAA
GGAGAGACAAGATCCAGCGCCACGGTTCTCAATCGTGTACTTGCCGAAGT
TTTTCGATCTGTTTTTCGACGCTGCTGTCAACCCCTGATGAGAGGCAGAT
GTGCCTTTGGTAAGTTTCTAATTAGGGCGGATTTTTGGACCTTTTCTTGT
CCTTTTCCGGCTATCTCCGCAGATTTTGGAGAAGCACGCCACACGCGACT
GCCCGCACTCTTCACGACGTGTGCCCTTTTTTCATTAGGGTGGGTTGGCG
CGCTTGGATCCTCCGGGGATCCATCTGGTGCCGATCGGCGGTGGTCGCAC
TTTTTCACCCGGAGCATCTCGTGTGGTCAAAGCGTAGCAGGTGAGATTCG
GGTTGAGTGGTTTCATTTTTGATCGTGGCTAGCATGTGGCACGAAACGCG
CATATCTGTATTACCACTGGACTTACCTTGACCTCAAAAACGTCTCTGTC
GCTTTGCCGTGTGGGGAAGCTTACTAGCTTGGAGAAATAGCTGTTTCTGC
CTCCGTTGAAATATCGGCATTACCGTTTGTGTGCTCGACCTTTTAACGCG
TTTTTTCAAGAACGAGCAATATTGATGCTGGATGGAAAAAACTGTGCGCG
CAACCACTGTGAAAATGCCTTTTGCGCATTTGTTTGGTAGCAAATGCTTT
CTTCCTACACCACCCAGCTTTTGTAGATTACAAATGTGTGAATAGAACTC
GTCGTGAAAGCAGTCACGTTTTGCAAAGTTGTGCTCTGTGAGTACTCTCC
GCTTGCCATTGTGACACAACCATTCCAAGTGCTTGTCTACACGCCGAACC
TTACATCTCGAAGAATGAGGGGAGACGAGAGAGAACAACCACGTGCAGGA
AATCACGTGTAGAGTAGTATGGGCATCAGAGAACGTGTGCTCTTCGCGCC
AGTTTCGCGTGTTCCTCCCCTCTCTGGATCTTGCCTCGGTCTGTTTGTGG
GCTTCTATTTTCTGCCCCACCGCTTTCTGGATGTGGAGCATGCCCATTAA
TATATTTCCCGGCCTTGATCACGCACCTGCCTCTCTCGTTTCTTTATTCA
TTTTCCTGAAGGTGCCCGGTACACACGCGCCATGGAGAGCGCCCGTACCC
TCTCGTTCGTTGTTGCTGCTGGTCGGAAAGCTGGATCTGCCGAAATCGGT
GAGAGCCCTTCTGTTATTTTACCTTGTGTGTCGTTGTAGAGCAGAGCACG
AAGAAGACCACCGACGCCCATGGTGCCATGGTTCTTCGTCACGCCTGTCG
CGGAGTTTTAGGAACTGTGTGTCTGCCGGTTTCGGCGCTGCTGTTTATGT
TCGTCAAGCTTTGGTAAAGGCATGCAGATGGTATTGTCGTCGGCTGTACG
TGAGGCTAACTCCCCTTGCCTCCTCACATTCCCTCGCACAGACAGGTAGT
CGAAAAGCACGCCACGCGCGACTACCCATGCCCATCACCTGTCCCTTTTT
CTGCGCAGGTGGGTCACGCGCTTGGATAACGGGATTCGTCTGCTGCCGAT
CGGCGGAGGGGAAACGAGGAGCCAGTGTCAGTGGGAAGCATAGCGGGTGA
GAGTTGGGACATTCAAGCGGCGGCGCAGGCACGCGCCTATTACACCACAG
GACAGTTGTTGACCTCGGAAAGCTTTCTGCCCCTTTGTTAAGTTGGGGCA
CCTGCATGCCTCCTCAAACAATATGTCGTCCATCTCTGCGTTGACCGGTA
GGAAAACACAACGCCTCCGTCGGTTGTAGCTAGCTCAAATCGCGGAGGCA
GATATCTGAACCAGCCTGTGAGTTTCGCCTGTGGCTCATTGTACTTGTGG
TTTTGCAAAGTCATCGTGGGCGAGCTCTTCCTTGCAACTGGAACCATAAG
CGTTCCGAGCAACTGGCCGTTTTCTGACATGTTTGGTATCGTAGCTCCTA
TTTTCAAAATGCTTTCCCCGATTGGCCACTGCGTTCGTTCGCCTGTGCCC
TCTCTCACAGGCAGGCACCGAGTACACCAATACGAGACGATAGAACACGA
ACAGGGGCACGCGGATTTCCTGCTGAGTGGTGACAACTGGCGAGCAAGTG
CTTTGCGGTGTGTCTAGTGTGTTTGTTTCAAGAGGACAGAGAGAGAGAGG
TAACATGCAGGAGAGATGTATGTATCAATCAACGAGAGGGGGTCGAGTAA
AAGAGGAAGCATACTACCTTCCTCGATCCTATCGTCGTCGCCTGGTCTCA
GGTTTGGCTTGCGTGTCGCACGGGCTTGCGTGCGCCGTCTTCATATCCGA
AGTTTGAAACAAAACCTCTCTCTCTGTCGATTACCCTCCCTCTCCTCCGC
CGGCGGGTTCGCAGAAGCGAGCAGCGCCCGAACGTCCTCCGTCGTTAGCA
GTCCCCCTTTCGGCGCGGCTTGGATCGCGCGCTTGGATTAACCCTTCTGC
TGCTGATCAACACGAGGGGCCGTTGTTGTTATGGTTGTGGGCAGGAGGAG
ATCCTTTGGCGAAAGAGGTGAGGTACTTGACGAAATGTCCGTCGCGCCTG
GTTTGGCGTTTCATCTTTCTCCAGCGCGCGGTGTCTCTAGAAACAACATT
CGCACACTCGTCGTAAACTCTAGCACGTGTCGGAGCTGCGGCAGTTTTGA
GTGCCAACGTGAAAGCACGCTTTCTCCCGTGGATTCCCGATGTGTCTAGA
AGCAACATACGTACACTCGCCCTAAACTCTAGGTCCGCCCCACAATCGCG
CAACTTCCAACACAAGAAAATAAAAAGGATGGGCTGGTGACGGATATCTA
CGAGGAGCCGGCGAGGGGAATGCCAAACGTGTGGTGCATGACGGTCAACA
ACACACGATGTGTGAGATTGGTGGGGAGGTGTGGCTGGGGGACGTGGCGG
ATAGCTAACGGGGTGGACAACAGTTGGGTAGCCGCTTGGGATGCGAAGTA
TGGATACTCAACACCTGCAACGGTGCCAAACCTTGCAGGTGAGAAAGATA
TAATCGCAAATTTCAGAAAAGGCTTTTTATTTTTGCCGCAACAACTTTTT
CAATCAATCAATCATCCCCGACCAGGTACACGAAAGGCACGGGAGTAGAG
ACAAATGCGCACACACAACCACGTTCTCCAAGATCTGACATACAGGGGAA
TAAGAAATCGCTGTTCGCATAGAAAAGGAGAAATGACCTTTCCAGACCTT
GGTTGGTCCCGGCTCGGCGTTTTGGCCCGGTGCCGGTAGCTTTATCCCAA
GCCAATTCGCGTGCGTTGTATGTGTCTTTGATCCGCAAGCGCTGATGTCG
CGTATGTGCAGTTTTGGCGATTACAAGAACGCGTGTGCTTGGTTTTAATT
TTCGATTGTGTTGAAAAGCTGTGTGTGCTGTTCTGCTATTGCCTCCTCCT
TCCAAGTCGAGATCGTACACACCCATGTGCTGATCCTGATCCTGGATCGG
AGCTTTTAATTCTATTTCGACGGCACCTACCGTGGATGTCAGTGTGCGTG
TGCAAAATCCGGTCTGGTACAACAGATTTGACTTCCTTCGTCTCCCTAGA
ACATGGCGCGTATGTAGCTTATGCGTGTGTATTCAACACGTCTCACGGCC
AGCAAGCGGAAGCACATCCTTGTTTCATGCGTGGGTGCTGTGCGCACGCT
TTGATTCTATATCGGAACGTGCGTTTCCACACAGCACGCATTGCTCTTTA
CAACAGACTTTCCTGACAACACACACGACATTACAAATGATAAAAGCCAG
GATGGGAAACTCCGAAGTATCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4843:7519..11341+

>mRNA_L-elsbetiae_contig4843.12748.1 ID=mRNA_L-elsbetiae_contig4843.12748.1|Name=mRNA_L-elsbetiae_contig4843.12748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig4843:7519..11341+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGTGGGCAGGAGGAGATCCTTTGGCGAAAGAGATGGTTGTGGGCA
GGAGGAGATCCTTTGGCGAAAGAGAAAATAAAAAGGATGGGCTGGTGACG
GATATCTACGAGGAGCCGGCGAGGGGAATGCCAAACGTGTGGTGCATGAC
GGTCAACAACACACGATGTGTGAGATTGGTGGGGAGGTGTGGCTGGGGGA
CGTGGCGGATAGCTAACGGGGTGGACAACAGTTGGGTAGCCGCTTGGGAT
GCGAAGTATGGATACTCAACACCTGCAACGGTGCCAAACCTTGCAGAAAA
TAAAAAGGATGGGCTGGTGACGGATATCTACGAGGAGCCGGCGAGGGGAA
TGCCAAACGTGTGGTGCATGACGGTCAACAACACACGATGTGTGAGATTG
GTGGGGAGGTGTGGCTGGGGGACGTGGCGGATAGCTAACGGGGTGGACAA
CAGTTGGGTAGCCGCTTGGGATGCGAAGTATGGATACTCAACACCTGCAA
CGGTGCCAAACCTTGCAGGATGGGAAACTCCGAAGTATCGGGATGGGAAA
CTCCGAAGTATCGG
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