mRNA_L-elsbetiae_contig4843.12747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4843.12747.1
Unique NamemRNA_L-elsbetiae_contig4843.12747.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4843.12747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4843contigL-elsbetiae_contig4843:6365..7572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size265
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4843.12747.1prot_L-elsbetiae_contig4843.12747.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4843 6365..7571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816476.3058636-CDS-L-elsbetiae_contig4843:6364..63981622816476.3058636-CDS-L-elsbetiae_contig4843:6364..6398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 6365..6398 +
1691683587.675655-CDS-L-elsbetiae_contig4843:6364..63981691683587.675655-CDS-L-elsbetiae_contig4843:6364..6398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 6365..6398 +
1622816476.3197951-CDS-L-elsbetiae_contig4843:6974..71291622816476.3197951-CDS-L-elsbetiae_contig4843:6974..7129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 6975..7129 +
1691683587.6852345-CDS-L-elsbetiae_contig4843:6974..71291691683587.6852345-CDS-L-elsbetiae_contig4843:6974..7129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 6975..7129 +
1622816476.3310664-CDS-L-elsbetiae_contig4843:7496..75711622816476.3310664-CDS-L-elsbetiae_contig4843:7496..7571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 7497..7571 +
1691683587.6989658-CDS-L-elsbetiae_contig4843:7496..75711691683587.6989658-CDS-L-elsbetiae_contig4843:7496..7571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 7497..7571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4843.12747.1

>prot_L-elsbetiae_contig4843.12747.1 ID=prot_L-elsbetiae_contig4843.12747.1|Name=mRNA_L-elsbetiae_contig4843.12747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
RQRSLWGIALSVLRKHATRLPVPLLGAAGLRLELWCRSAADRLLSRSFGA
GNKKVLCRSGAQQVPQQICASESACNLWSVLAVDWRIT
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mRNA from alignment at L-elsbetiae_contig4843:6365..7572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4843.12747.1 ID=mRNA_L-elsbetiae_contig4843.12747.1|Name=mRNA_L-elsbetiae_contig4843.12747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1208bp|location=Sequence derived from alignment at L-elsbetiae_contig4843:6365..7572+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGAGATCCTTGTGGGGGATAGCCTTGTCTGGTGAGAGCAGAGCAGG
CAAAGTTTAAAATTCCCCTGTTCAGGTGCGGTTTTATATTCCAGCGCGGC
ACGTGTGGCACGATATGCACCTTTATTACGTCGCCGCTGTACCCAATGCG
TCGCACTATGTTGACCTGCTTCAATGGTATCGAGCTACACATATCCCATG
ACTCCTCTTTGTCCAACCGTGTTTTCGTGCAAACTCCAAACTGACACTGT
ATCTTTGAACCCTGCTCCACCCGAAGCGGCATTCGAATAACAAACGCCTT
ACTTTTGCAACTCTCGTGTTGAAAGGAGATAAATCTTGCTTGTTCACGGA
GCGGCGATCCAAGGCGGTCTGCGCGTGTTGGAGGAGTAAAGTGAACTTGA
AGGAAGGTGCCCCTTCTGGTGCGTGATACTGGGCAAGGCTAGAGACGCGC
AAAAGGTCGCGTGTTGCCTCCGCTCGCTCGTTTCAATCTCATCCCGTGAT
TATTTTCTCTCATTACTCCCAACCCTTTTTCCCGCTCCCTTTCTCTCTCT
CTCTCTCTCTCTTTCTCGATATGCGCCTCTCTCGCACACACATCCCCCCC
GACATCACAGTACTTCGGAAGCACGCCACGCGACTACCCGTGCCCCTTTT
AGGCGCGGCTGGATTGCGCTTGGAACTGTGGTGTAGATCCGCTGCTGATA
GGCTACTATCTCGTTCGTTTGGTGCGGGTAACAAGAAGGTCTTGTGTCGG
TCGGGAGCGCAGCAGGTGAGGTTCTGTGGTTTCATATTTTCCAGCGGCGC
GTTTGTGGCACGATCGACCCCTATATCCTGCTCGTTGGGGATATATTGGG
CCTGTTCTCTTCGTCCAAAGCACATGCGTTCCGATTACGTGACCGTTTCC
TCCACCATCCATTCCGAGTGGTGACTTTCTTGTATCTGCTGAACCAGAGA
GTAGAAAGGCAAGAGAGAGGACAACCACGCGCAGAAAGATATAGCACAAG
TATAGGAGTAGAGGCAGCAGAGAGTGCGTGCTCTTCTTTGCCTCTTGGTT
TTGCTTACGCCTATTGGTTCTCTTTTTTTCCCCTGCGCATTCGCTCTGTC
GCTCGCTCTTTCCCGTCTTCCTCTTTGCTTAGGTGCCTCAGCAGATATGC
GCCTCGGAGAGCGCCTGTAACCTATGGTCGGTTCTTGCTGTTGATTGGAG
GATAACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4843:6365..7572+

>mRNA_L-elsbetiae_contig4843.12747.1 ID=mRNA_L-elsbetiae_contig4843.12747.1|Name=mRNA_L-elsbetiae_contig4843.12747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig4843:6365..7572+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGAGATCCTTGTGGGGGATAGCCTTGTCTGCGGCAGAGATCCTTGT
GGGGGATAGCCTTGTCTGTACTTCGGAAGCACGCCACGCGACTACCCGTG
CCCCTTTTAGGCGCGGCTGGATTGCGCTTGGAACTGTGGTGTAGATCCGC
TGCTGATAGGCTACTATCTCGTTCGTTTGGTGCGGGTAACAAGAAGGTCT
TGTGTCGGTCGGGAGCGCAGCAGTACTTCGGAAGCACGCCACGCGACTAC
CCGTGCCCCTTTTAGGCGCGGCTGGATTGCGCTTGGAACTGTGGTGTAGA
TCCGCTGCTGATAGGCTACTATCTCGTTCGTTTGGTGCGGGTAACAAGAA
GGTCTTGTGTCGGTCGGGAGCGCAGCAGGTGCCTCAGCAGATATGCGCCT
CGGAGAGCGCCTGTAACCTATGGTCGGTTCTTGCTGTTGATTGGAGGATA
ACGGTGCCTCAGCAGATATGCGCCTCGGAGAGCGCCTGTAACCTATGGTC
GGTTCTTGCTGTTGATTGGAGGATAACG
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