mRNA_L-elsbetiae_contig4843.12746.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4843.12746.1
Unique NamemRNA_L-elsbetiae_contig4843.12746.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4843.12746.1 vs. uniprot
Match: D8LJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.940e-16
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV 123
            MLPLL+ RAAKPRVLLAAMSRYN KQDG FLGYLP+KNAGV
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNAGV 41
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BLAST of mRNA_L-elsbetiae_contig4843.12746.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.530e-16
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV 123
            MLPLL+RRAAKPRVLLAAMSRYNEKQDG FLGYLPDKNAGV
Sbjct:  781 MLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLGYLPDKNAGV 821
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BLAST of mRNA_L-elsbetiae_contig4843.12746.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.700e-14
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV 123
            M+PLL+RRAAKPRVLLAA+SRYNEKQDGAFLGYLP+K+ GV
Sbjct:  445 MVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTGV 485
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BLAST of mRNA_L-elsbetiae_contig4843.12746.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.910e-11
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV 123
            M+PLL+RRAA  RVLLAAMSRYN KQDGAFLGYLP+KN  V
Sbjct:  812 MVPLLKRRAATLRVLLAAMSRYNNKQDGAFLGYLPEKNVRV 852
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BLAST of mRNA_L-elsbetiae_contig4843.12746.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.970e-10
Identity = 35/52 (67.31%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAMSRYNEKQDGAFLGY-----------LPDKNAGV 123
            MLPLL+RRAAKPRVLLAAMSRYN K DGAFLG            LP KNAG 
Sbjct:  391 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNAGA 442
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BLAST of mRNA_L-elsbetiae_contig4843.12746.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.840e-9
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 LPLLRRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKN 114
            LP L+RRA KP VLLAA+SRYN KQDG FLGY PDKN
Sbjct:  150 LPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKN 186
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BLAST of mRNA_L-elsbetiae_contig4843.12746.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.070e-9
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAG 120
            MLP L+RRA KPRV LA +SRYN KQDG FLGY P KN G
Sbjct:  364 MLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNGG 403
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BLAST of mRNA_L-elsbetiae_contig4843.12746.1 vs. uniprot
Match: D8LPN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN9_ECTSI)

HSP 1 Score: 45.8 bits (107), Expect = 1.580e-5
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAG 120
            MLP+L+RR  KPR LLAA+SRY +KQD +F G+ P  + G
Sbjct:    1 MLPVLKRRVTKPRALLAALSRYIDKQDRSFTGF-PGNHVG 39
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4843.12746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LJ25_ECTSI1.940e-1687.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1W5_9PHAE2.530e-1695.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE2.700e-1485.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE1.910e-1180.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE5.970e-1067.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C8_ECTSI1.840e-978.38EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JNS0_9PHAE2.070e-972.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPN9_ECTSI1.580e-557.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4843contigL-elsbetiae_contig4843:1572..1796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size126
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816476.4047706-CDS-L-elsbetiae_contig4843:1571..16331622816476.4047706-CDS-L-elsbetiae_contig4843:1571..1633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 1572..1633 +
1691683587.7287683-CDS-L-elsbetiae_contig4843:1571..16331691683587.7287683-CDS-L-elsbetiae_contig4843:1571..1633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 1572..1633 +
1622816476.4188094-CDS-L-elsbetiae_contig4843:1732..17961622816476.4188094-CDS-L-elsbetiae_contig4843:1732..1796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 1733..1796 +
1691683587.7402277-CDS-L-elsbetiae_contig4843:1732..17961691683587.7402277-CDS-L-elsbetiae_contig4843:1732..1796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 1733..1796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4843.12746.1prot_L-elsbetiae_contig4843.12746.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4843 1572..1796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4843.12746.1

>prot_L-elsbetiae_contig4843.12746.1 ID=prot_L-elsbetiae_contig4843.12746.1|Name=mRNA_L-elsbetiae_contig4843.12746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
MLPLLRRRAAKPRVLLAAMSRYNEKQDGAFLGYLPDKNAGV*
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mRNA from alignment at L-elsbetiae_contig4843:1572..1796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4843.12746.1 ID=mRNA_L-elsbetiae_contig4843.12746.1|Name=mRNA_L-elsbetiae_contig4843.12746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=225bp|location=Sequence derived from alignment at L-elsbetiae_contig4843:1572..1796+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCCGCTTCTGAGGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
AGCCATGTCTAGGTGCGTGGTGTTGTTTGGTTCTTTGGTGTTTATTGTGG
ACAACACACAATTTGAAAGAAGTTGGCTGATGCTTTTACCCGCCCCGCTT
GTTTTCGACAGGTACAACGAGAAGCAGGACGGAGCTTTCCTCGGGTACCT
CCCGGATAAAAACGCGGGAGTCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4843:1572..1796+

>mRNA_L-elsbetiae_contig4843.12746.1 ID=mRNA_L-elsbetiae_contig4843.12746.1|Name=mRNA_L-elsbetiae_contig4843.12746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig4843:1572..1796+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCCGCTTCTGAGGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
AGCCATGTCTAGATGCTCCCGCTTCTGAGGCGGAGGGCGGCGAAGCCTCG
TGTGCTCTTGGCAGCCATGTCTAGGTACAACGAGAAGCAGGACGGAGCTT
TCCTCGGGTACCTCCCGGATAAAAACGCGGGAGTCTAAGTACAACGAGAA
GCAGGACGGAGCTTTCCTCGGGTACCTCCCGGATAAAAACGCGGGAGTCT
AA
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