mRNA_L-elsbetiae_contig4843.12745.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4843.12745.1
Unique NamemRNA_L-elsbetiae_contig4843.12745.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4843.12745.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 2.500e-64
Identity = 198/217 (91.24%), Postives = 201/217 (92.63%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASISVADSDGYTALHHSVYHKHLAVSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPXXXXXXXXXLEVVRELVHWYGTDRCTCDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDRRCG TNQTPLMVASVIGSSRVVRDLLRQGAS+SVADSDGYTALHH+VYHKHLAVSK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NPLLSAYGSLP         LEVVRELVHWYGTDRCT DGGALALATAASRKHVDIV FLC+AGV
Sbjct:  422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638
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BLAST of mRNA_L-elsbetiae_contig4843.12745.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 8.350e-62
Identity = 175/217 (80.65%), Postives = 181/217 (83.41%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASISVADSDGYTALHHSVYHKHLAVSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPXXXXXXXXXLEVVRELVHWYGTDRCTCDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGS +  +ATTDIDRRCGDTN TPLMVASVIGSSRVV+DLLRQGAS+SVADSDGYTALHHSVYH+HLAVS               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NPLLSAYGSLP         L+VV ELVHWYGTDRCT DGG LALATAASRKHVDIVTFLCDAGV
Sbjct:    1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217
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BLAST of mRNA_L-elsbetiae_contig4843.12745.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 8.040e-57
Identity = 197/218 (90.37%), Postives = 200/218 (91.74%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASISVADSDGYTALHHSVYHKHLAVSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPXXXXXXXXXLEVV-RELVHWYGTDRCTCDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIG SRVVRDLLRQGAS+SVADSDGYTALHH+VYHKHLAVSK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LSAYGSLP    XXXXX     RELV+WYG DRCT DGGALAL TAASRKHVDIVTFL DAGV
Sbjct:    7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224
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BLAST of mRNA_L-elsbetiae_contig4843.12745.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.630e-45
Identity = 154/209 (73.68%), Postives = 160/209 (76.56%), Query Frame = 1 
Query:   25 SGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASISVADSDGYTALHHSVYHKHLAVSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPXXXXXXXXXLEVVRELVHWYGTDRCTCDGGALALATAASRKHVDIVTFLCDAGV 651
            SGS +  IATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGAS+S+ADSDGY ALHH+VYHKHLAVSK+                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSA     XXXXXXXXX     ELV+WYGTD CT DGGALALATAASR  VDIVTFLCDAGV
Sbjct:  399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607
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BLAST of mRNA_L-elsbetiae_contig4843.12745.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.250e-37
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASISVADSDGYTALHHSVYHKHLAVSKE 240
            MPSTLSKASGS DPTIATT IDR CGDTNQTPLMVASVIGSSRVVRDLLRQGAS+SVADSDG TALHHSVYH HLAVSK+
Sbjct:    1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKD 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4843.12745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JL58_9PHAE2.500e-6491.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE8.350e-6280.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE8.040e-5790.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE1.630e-4573.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI1.250e-3791.25EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4843contigL-elsbetiae_contig4843:402..1052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue6.7e-31
Seed eggNOG ortholog2880.D8LH66
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size653
Cds size651
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816476.3682852-CDS-L-elsbetiae_contig4843:401..10521622816476.3682852-CDS-L-elsbetiae_contig4843:401..1052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 402..1052 +
1691683587.7130795-CDS-L-elsbetiae_contig4843:401..10521691683587.7130795-CDS-L-elsbetiae_contig4843:401..1052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4843 402..1052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4843.12745.1prot_L-elsbetiae_contig4843.12745.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4843 402..1052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4843.12745.1

>prot_L-elsbetiae_contig4843.12745.1 ID=prot_L-elsbetiae_contig4843.12745.1|Name=mRNA_L-elsbetiae_contig4843.12745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLR
QGASISVADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGVDTPLH
VAATKGFCQGMKLLIDAGANVDSRLDDGTTPLFLAAKDGRLEGVKILLRA
NANPLLSAYGSLPLYMAVYNGHLEVVRELVHWYGTDRCTCDGGALALATA
ASRKHVDIVTFLCDAGV
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mRNA from alignment at L-elsbetiae_contig4843:402..1052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4843.12745.1 ID=mRNA_L-elsbetiae_contig4843.12745.1|Name=mRNA_L-elsbetiae_contig4843.12745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=651bp|location=Sequence derived from alignment at L-elsbetiae_contig4843:402..1052+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATCAACTCTCAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTGC
TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTTTGCGG
CAGGGTGCCAGCATTTCGGTAGCGGACAGCGACGGTTATACCGCTTTGCA
CCACTCGGTTTATCACAAACACCTGGCCGTTAGCAAAGAGCTGATCGAGG
CGGGAGCGGACCTTGAAGCGAGGCCTGGTGGCGTAGATACACCACTTCAC
GTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGAAGCTGCTGATCGACGC
TGGCGCGAATGTGGATAGCAGGCTCGATGACGGAACAACACCGCTGTTCC
TCGCGGCAAAGGATGGGCGGCTGGAAGGGGTGAAAATTCTCCTTCGGGCG
AACGCGAATCCGCTCTTGTCAGCGTACGGCAGTCTCCCGCTATATATGGC
GGTTTACAATGGACATCTGGAAGTGGTCCGCGAGCTCGTGCATTGGTACG
GAACCGACCGCTGTACCTGTGACGGCGGCGCGCTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4843:402..1052+

>mRNA_L-elsbetiae_contig4843.12745.1 ID=mRNA_L-elsbetiae_contig4843.12745.1|Name=mRNA_L-elsbetiae_contig4843.12745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig4843:402..1052+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATCAACTCTCAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTGC
TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTTTGCGG
CAGGGTGCCAGCATTTCGGTAGCGGACAGCGACGGTTATACCGCTTTGCA
CCACTCGGTTTATCACAAACACCTGGCCGTTAGCAAAGAGCTGATCGAGG
CGGGAGCGGACCTTGAAGCGAGGCCTGGTGGCGTAGATACACCACTTCAC
GTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGAAGCTGCTGATCGACGC
TGGCGCGAATGTGGATAGCAGGCTCGATGACGGAACAACACCGCTGTTCC
TCGCGGCAAAGGATGGGCGGCTGGAAGGGGTGAAAATTCTCCTTCGGGCG
AACGCGAATCCGCTCTTGTCAGCGTACGGCAGTCTCCCGCTATATATGGC
GGTTTACAATGGACATCTGGAAGTGGTCCGCGAGCTCGTGCATTGGTACG
GAACCGACCGCTGTACCTGTGACGGCGGCGCGCTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT
GATGCCATCAACTCTCAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTG
CTACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTG
ATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTTTGCG
GCAGGGTGCCAGCATTTCGGTAGCGGACAGCGACGGTTATACCGCTTTGC
ACCACTCGGTTTATCACAAACACCTGGCCGTTAGCAAAGAGCTGATCGAG
GCGGGAGCGGACCTTGAAGCGAGGCCTGGTGGCGTAGATACACCACTTCA
CGTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGAAGCTGCTGATCGACG
CTGGCGCGAATGTGGATAGCAGGCTCGATGACGGAACAACACCGCTGTTC
CTCGCGGCAAAGGATGGGCGGCTGGAAGGGGTGAAAATTCTCCTTCGGGC
GAACGCGAATCCGCTCTTGTCAGCGTACGGCAGTCTCCCGCTATATATGG
CGGTTTACAATGGACATCTGGAAGTGGTCCGCGAGCTCGTGCATTGGTAC
GGAACCGACCGCTGTACCTGTGACGGCGGCGCGCTGGCTCTCGCAACGGC
CGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTG
TG
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