mRNA_L-elsbetiae_contig484.12741.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig484.12741.1 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA) HSP 1 Score: 234 bits (596), Expect = 9.320e-70 Identity = 126/259 (48.65%), Postives = 175/259 (67.57%), Query Frame = 1 Query: 1 MTLDEKGRRLHGRVEFFDRNVTQLTKHVQQIIGHHQADGVKHGISFSAMIKTISAQEPFADLQDRLVGLAELTERISLERKNIMIDRAKSQVLNKLAEIKKTVISPTQALLQDRDSCVKALLKAQ-EKATDDQAKGLCEETAGATLEHRHQLMNTEATVDNNFELFEAQRVEEIKE------------------------------ILEEFLRCELYYHCRALEVLAPALMHIGGVNAESARENMREDIEGMNKQLHYT 684 M LD+KGR + GR+EFF+RN+ +L+KH+ ++ H+A GV G+ FS +K ++AQEPFADLQDRLV L+E+TERI+LERK + DRA+ QVL KL E++ VI+PT+ALL+DRD C+++L+KA+ E Q ++T A LE RH L NTE VDNN ELFEAQRVE++KE IL+EF+RCE+YYHCRALE+LAPAL H+ GV+ + A +N+R ++ +N +L+Y+ Sbjct: 1 MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKA-GVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAETEHDLKVQQGKATKDTPLAILELRHCLRNTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNTRLNYS 258
BLAST of mRNA_L-elsbetiae_contig484.12741.1 vs. uniprot
Match: D7FVS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS5_ECTSI) HSP 1 Score: 216 bits (550), Expect = 8.720e-65 Identity = 110/127 (86.61%), Postives = 120/127 (94.49%), Query Frame = 1 Query: 1 MTLDEKGRRLHGRVEFFDRNVTQLTKHVQQIIGHHQADGVKHGISFSAMIKTISAQEPFADLQDRLVGLAELTERISLERKNIMIDRAKSQVLNKLAEIKKTVISPTQALLQDRDSCVKALLKAQEK 381 MTLDEKGRRLHGR+EFFDRNV QL +H+ Q +GHHQ DGVKHGISFS IKTI+AQEPFADLQDRLVGLAE+TERISLERKNIMIDRAKSQVLNKLA+IKKTVI+PTQALLQDRDSCVKAL+KA+EK Sbjct: 1 MTLDEKGRRLHGRLEFFDRNVAQLIRHISQTVGHHQ-DGVKHGISFSTKIKTIAAQEPFADLQDRLVGLAEITERISLERKNIMIDRAKSQVLNKLADIKKTVIAPTQALLQDRDSCVKALVKAEEK 126
BLAST of mRNA_L-elsbetiae_contig484.12741.1 vs. uniprot
Match: D7G989_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G989_ECTSI) HSP 1 Score: 147 bits (371), Expect = 2.650e-39 Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 1 Query: 454 MNTEATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMHIGGVNAESARENMREDIEGMNKQLHYT 684 MNTEATVDNNFELFEAQRVEEIK+ILEEFLRCELYYHCRALEVL PALMHIGGV+ ESARENMREDIEGMNKQL YT Sbjct: 1 MNTEATVDNNFELFEAQRVEEIKDILEEFLRCELYYHCRALEVLGPALMHIGGVDPESARENMREDIEGMNKQLRYT 77
BLAST of mRNA_L-elsbetiae_contig484.12741.1 vs. uniprot
Match: W7TTF8_9STRA (FAM92 protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTF8_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.770e-32 Identity = 80/233 (34.33%), Postives = 135/233 (57.94%), Query Frame = 1 Query: 7 LDEKGRRLHGRVEFFDRNVTQLTKHVQQIIGHHQADGVKHGISFSAMIKTISAQEPFADLQDRLVGLAELTERISLERKNIMIDRAKSQVLNKLAEIKKTVISPTQALLQDRDSCVKALLKAQEKAT-------------DDQAKGLCEETAGATLEHRHQLMNTEATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMHIGGVNAESARENMREDIEGMN 666 +DEKGR L GR++F +RNVT L + V+ ++ +H +G + S ++ +AQE F DLQ+ L+ +AE T+R++ ER+ IM +RA+ +V++ I V+ PT+ LL+DR+ ++ + K T +D A ++ A + +H T+ VD+NF FE RV E+K +LEE LR E+ YHCRALE+L P + + ++ + A +M ++++ +N Sbjct: 1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHD-EGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKH----TDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 228
BLAST of mRNA_L-elsbetiae_contig484.12741.1 vs. uniprot
Match: A0A4D9D8D0_9STRA (Methionine aminopeptidase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8D0_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 7.310e-7 Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 457 NTEATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMHIGGVNAESARENMREDIEGMN 666 +T+ VD+NF FE RV E+K +LEE LR E+ YHCRALE+L P + + ++ + A +M ++++ +N Sbjct: 406 HTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 475
BLAST of mRNA_L-elsbetiae_contig484.12741.1 vs. uniprot
Match: A0A5A8ECW2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECW2_CAFRO) HSP 1 Score: 55.8 bits (133), Expect = 7.970e-5 Identity = 41/162 (25.31%), Postives = 74/162 (45.68%), Query Frame = 1 Query: 148 IKTISAQEPFADLQDRLVGLAELTERISLERKNIMIDRAKSQVLNKLAEIKKTVISPTQALLQDRDSCVKALLKAQEKATDDQAKGLCEETAG-ATLEHRHQLMNTEATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMHIGGVNAESA 630 ++ ++ EP + + LA+ ++ RK ++ DR ++ L + +P + LL DR S +K AQ A + ++ A ++ Q +N +A + QR ++KEIL E++R + +HCRALE + A I G + A Sbjct: 55 LRELAEVEPDSRFRKVFESLADALGQVERTRKGVLCDRFSETLIEPLNTLISEHFAPAERLLADRVSLLKRAETAQAAAAKATGSAVAVQSKRMAAMDATQQAINADAMAQSAIVRSAHQRAADLKEILSEYVRGRMLFHCRALEGFSRASAVIAGADPSRA 216
BLAST of mRNA_L-elsbetiae_contig484.12741.1 vs. uniprot
Match: J3JTV0_DENPD (Uncharacterized protein n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=J3JTV0_DENPD) HSP 1 Score: 55.8 bits (133), Expect = 9.300e-5 Identity = 38/121 (31.40%), Postives = 60/121 (49.59%), Query Frame = 1 Query: 415 ETAGATLEHRHQLMNTEATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMHIGGVNAESARENMREDIEGMNKQLHYT*LGPQYGHWWGRRTFSVLRVSNENVST*FYS 777 E A AT E L T T++ FE Q++ ++K IL +F+R E+ YH R+LEVL A + G+N +S E+ + M+ + + P+ H SVL S +++ F S Sbjct: 154 EVAKATAE----LSKTVHTIEEKASTFEKQKLHDLKAILLDFIRIEMGYHARSLEVLTDAFSLVNGINEDSDLEDFQTTRGKMDLEFKKSLRLPETTHRNSPGARSVLLRSTQSLGAIFSS 270 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig484.12741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig484.12741.1 >prot_L-elsbetiae_contig484.12741.1 ID=prot_L-elsbetiae_contig484.12741.1|Name=mRNA_L-elsbetiae_contig484.12741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp MTLDEKGRRLHGRVEFFDRNVTQLTKHVQQIIGHHQADGVKHGISFSAMIback to top mRNA from alignment at L-elsbetiae_contig484:27221..31497+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig484.12741.1 ID=mRNA_L-elsbetiae_contig484.12741.1|Name=mRNA_L-elsbetiae_contig484.12741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4277bp|location=Sequence derived from alignment at L-elsbetiae_contig484:27221..31497+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig484:27221..31497+ >mRNA_L-elsbetiae_contig484.12741.1 ID=mRNA_L-elsbetiae_contig484.12741.1|Name=mRNA_L-elsbetiae_contig484.12741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig484:27221..31497+ (Laminarionema elsbetiae ELsaHSoW15)back to top |