mRNA_L-elsbetiae_contig4835.12734.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4835.12734.1
Unique NamemRNA_L-elsbetiae_contig4835.12734.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4835.12734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4835contigL-elsbetiae_contig4835:4801..6493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1390
Cds size1386
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816475.0189652-CDS-L-elsbetiae_contig4835:4800..49221622816475.0189652-CDS-L-elsbetiae_contig4835:4800..4922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4835 4801..4922 +
1691683586.685258-CDS-L-elsbetiae_contig4835:4800..49221691683586.685258-CDS-L-elsbetiae_contig4835:4800..4922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4835 4801..4922 +
1622816475.0313268-CDS-L-elsbetiae_contig4835:5227..64911622816475.0313268-CDS-L-elsbetiae_contig4835:5227..6491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4835 5228..6491 +
1691683586.6975899-CDS-L-elsbetiae_contig4835:5227..64911691683586.6975899-CDS-L-elsbetiae_contig4835:5227..6491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4835 5228..6491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4835.12734.1prot_L-elsbetiae_contig4835.12734.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4835 4801..6491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4835.12734.1

>prot_L-elsbetiae_contig4835.12734.1 ID=prot_L-elsbetiae_contig4835.12734.1|Name=mRNA_L-elsbetiae_contig4835.12734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=462bp
THQNTRLRVDCEPWSVPLKAMKRTRSGHSRSPSPELDDGYSGRDLPVRVP
VTPTKAGLKDFASPPRPRKSGVAGPAASSMLPPLSPLKPAAGQRQEQMRA
PLSRLQQESASNGTRGGVSHHQVGPTFQSPSKHRSGLAQAPPAARAPLGG
PGAAAIAASSPSPPPEVATAVGAMRVLTPAKVARSRASVGGAKRPRMSGD
NARAREGNGALSASASGSGGADSGVAAVVVAGAAGARKDAGNRALFSSAS
NSYGAARRVSTHSSGSGRGREDQDDDDGDQDGSDTGGVLLAAELNAGSNS
SRDRPLPTSEPTSEATGGSAAGAVIDRLASASSLRVSTTLRTVGARRGGT
GAGGRSEDARVRRQRPAVAASTAAASMAAAARRGDTGAGGRSEDARVRRQ
RPAVAASTAAASTAAASAAVTAATRRSSGAKDTRSTRLAPATFAAAAAAA
AHRSSDAKDTRS
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mRNA from alignment at L-elsbetiae_contig4835:4801..6493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4835.12734.1 ID=mRNA_L-elsbetiae_contig4835.12734.1|Name=mRNA_L-elsbetiae_contig4835.12734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1693bp|location=Sequence derived from alignment at L-elsbetiae_contig4835:4801..6493+ (Laminarionema elsbetiae ELsaHSoW15)
ACACACCAAAATACACGCTTGCGTGTGGACTGCGAGCCCTGGAGCGTCCC
TCTCAAGGCTATGAAGAGAACGCGATCGGGTCACTCCCGATCGCCATCCC
CAGAGCTCGATGATGGTTATAGGTGTGTTGCAACAAATGGAGGGCATCGT
CTCCCTCGTTGGTTGCCCTGGGGGCTACAGGCACAAGTTCCGTCTACGAT
ATACCGTACAACTCGGCCCTCTTTTTGTGGCGCCGAGATGAGTGCGATGC
TAGTTATCACTACATGCTGCAGGCGTGCAAGGCTTGATCCCGGCTGGCAA
GGTGATTATGGTCGTTCTTCTTCTTCCTCCTCCTCCTCCTTCTCTCTGTC
CTGCTCTGATGTCTCTCTCTCTCTCGCTTCGCTTTCGCCGTGCGTTCCCA
TCTCTCGCTGCCTTTTCATGTCCCCAGCGGCCGCGACCTGCCGGTACGGG
TCCCTGTGACTCCCACCAAGGCCGGCCTCAAGGACTTCGCGTCGCCGCCC
CGACCTCGAAAAAGCGGCGTCGCAGGCCCGGCGGCCTCCTCGATGCTGCC
TCCCCTGTCGCCGCTCAAGCCGGCGGCGGGCCAGCGGCAGGAGCAGATGC
GGGCCCCTCTCTCCCGCCTGCAGCAGGAGAGCGCCAGCAACGGCACCAGG
GGTGGCGTGAGCCACCATCAGGTTGGTCCGACCTTCCAGTCGCCCAGCAA
GCACCGTTCCGGTCTGGCCCAAGCCCCGCCCGCCGCGCGAGCCCCTCTCG
GCGGCCCCGGCGCCGCCGCAATCGCGGCTTCCTCCCCGTCCCCGCCGCCG
GAGGTGGCAACGGCGGTAGGAGCCATGCGAGTGCTGACGCCCGCAAAGGT
TGCGCGCTCCAGGGCCAGCGTGGGGGGGGCTAAGAGGCCGCGGATGAGCG
GGGACAATGCGCGTGCTCGTGAAGGAAACGGCGCCCTGTCCGCTTCGGCC
TCCGGCAGCGGCGGCGCCGACAGCGGTGTTGCTGCCGTGGTAGTTGCCGG
CGCCGCCGGCGCGAGGAAGGACGCCGGTAACCGGGCCTTGTTCTCTTCCG
CGAGCAACAGCTATGGGGCCGCACGGCGTGTGAGCACGCACAGCAGCGGC
AGCGGGCGAGGCCGGGAGGACCAAGACGATGACGACGGCGACCAAGACGG
TAGCGACACGGGTGGCGTCCTTCTCGCCGCCGAGCTCAACGCGGGGAGTA
ACAGCAGCAGGGATCGACCGCTGCCCACCTCCGAGCCCACGTCCGAAGCC
ACGGGTGGTTCGGCGGCGGGGGCGGTGATCGATCGCCTGGCTTCCGCCTC
TTCTCTCCGCGTAAGCACAACCCTGAGGACGGTCGGCGCTCGCCGTGGCG
GCACCGGAGCCGGGGGCAGGAGCGAAGATGCAAGGGTCCGTCGACAACGG
CCCGCTGTTGCCGCTAGCACGGCGGCCGCTAGCATGGCGGCGGCAGCTCG
CCGTGGCGACACTGGAGCCGGCGGCAGGAGCGAGGACGCAAGGGTCCGTC
GACAACGGCCCGCTGTTGCCGCTAGCACGGCGGCCGCTAGCACGGCGGCT
GCTTCTGCCGCCGTCACCGCTGCCACTCGCCGAAGCAGCGGCGCGAAGGA
CACACGATCGACGAGGCTAGCGCCGGCCACTTTTGCCGCCGCCGCCGCCG
CCGCCGCTCATAGAAGCAGCGACGCGAAGGACACACGGTCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4835:4801..6493+

>mRNA_L-elsbetiae_contig4835.12734.1 ID=mRNA_L-elsbetiae_contig4835.12734.1|Name=mRNA_L-elsbetiae_contig4835.12734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2772bp|location=Sequence derived from alignment at L-elsbetiae_contig4835:4801..6493+ (Laminarionema elsbetiae ELsaHSoW15)
ACACACCAAAATACACGCTTGCGTGTGGACTGCGAGCCCTGGAGCGTCCC
TCTCAAGGCTATGAAGAGAACGCGATCGGGTCACTCCCGATCGCCATCCC
CAGAGCTCGATGATGGTTATAGACACACCAAAATACACGCTTGCGTGTGG
ACTGCGAGCCCTGGAGCGTCCCTCTCAAGGCTATGAAGAGAACGCGATCG
GGTCACTCCCGATCGCCATCCCCAGAGCTCGATGATGGTTATAGCGGCCG
CGACCTGCCGGTACGGGTCCCTGTGACTCCCACCAAGGCCGGCCTCAAGG
ACTTCGCGTCGCCGCCCCGACCTCGAAAAAGCGGCGTCGCAGGCCCGGCG
GCCTCCTCGATGCTGCCTCCCCTGTCGCCGCTCAAGCCGGCGGCGGGCCA
GCGGCAGGAGCAGATGCGGGCCCCTCTCTCCCGCCTGCAGCAGGAGAGCG
CCAGCAACGGCACCAGGGGTGGCGTGAGCCACCATCAGGTTGGTCCGACC
TTCCAGTCGCCCAGCAAGCACCGTTCCGGTCTGGCCCAAGCCCCGCCCGC
CGCGCGAGCCCCTCTCGGCGGCCCCGGCGCCGCCGCAATCGCGGCTTCCT
CCCCGTCCCCGCCGCCGGAGGTGGCAACGGCGGTAGGAGCCATGCGAGTG
CTGACGCCCGCAAAGGTTGCGCGCTCCAGGGCCAGCGTGGGGGGGGCTAA
GAGGCCGCGGATGAGCGGGGACAATGCGCGTGCTCGTGAAGGAAACGGCG
CCCTGTCCGCTTCGGCCTCCGGCAGCGGCGGCGCCGACAGCGGTGTTGCT
GCCGTGGTAGTTGCCGGCGCCGCCGGCGCGAGGAAGGACGCCGGTAACCG
GGCCTTGTTCTCTTCCGCGAGCAACAGCTATGGGGCCGCACGGCGTGTGA
GCACGCACAGCAGCGGCAGCGGGCGAGGCCGGGAGGACCAAGACGATGAC
GACGGCGACCAAGACGGTAGCGACACGGGTGGCGTCCTTCTCGCCGCCGA
GCTCAACGCGGGGAGTAACAGCAGCAGGGATCGACCGCTGCCCACCTCCG
AGCCCACGTCCGAAGCCACGGGTGGTTCGGCGGCGGGGGCGGTGATCGAT
CGCCTGGCTTCCGCCTCTTCTCTCCGCGTAAGCACAACCCTGAGGACGGT
CGGCGCTCGCCGTGGCGGCACCGGAGCCGGGGGCAGGAGCGAAGATGCAA
GGGTCCGTCGACAACGGCCCGCTGTTGCCGCTAGCACGGCGGCCGCTAGC
ATGGCGGCGGCAGCTCGCCGTGGCGACACTGGAGCCGGCGGCAGGAGCGA
GGACGCAAGGGTCCGTCGACAACGGCCCGCTGTTGCCGCTAGCACGGCGG
CCGCTAGCACGGCGGCTGCTTCTGCCGCCGTCACCGCTGCCACTCGCCGA
AGCAGCGGCGCGAAGGACACACGATCGACGAGGCTAGCGCCGGCCACTTT
TGCCGCCGCCGCCGCCGCCGCCGCTCATAGAAGCAGCGACGCGAAGGACA
CACGGTCGCGGCCGCGACCTGCCGGTACGGGTCCCTGTGACTCCCACCAA
GGCCGGCCTCAAGGACTTCGCGTCGCCGCCCCGACCTCGAAAAAGCGGCG
TCGCAGGCCCGGCGGCCTCCTCGATGCTGCCTCCCCTGTCGCCGCTCAAG
CCGGCGGCGGGCCAGCGGCAGGAGCAGATGCGGGCCCCTCTCTCCCGCCT
GCAGCAGGAGAGCGCCAGCAACGGCACCAGGGGTGGCGTGAGCCACCATC
AGGTTGGTCCGACCTTCCAGTCGCCCAGCAAGCACCGTTCCGGTCTGGCC
CAAGCCCCGCCCGCCGCGCGAGCCCCTCTCGGCGGCCCCGGCGCCGCCGC
AATCGCGGCTTCCTCCCCGTCCCCGCCGCCGGAGGTGGCAACGGCGGTAG
GAGCCATGCGAGTGCTGACGCCCGCAAAGGTTGCGCGCTCCAGGGCCAGC
GTGGGGGGGGCTAAGAGGCCGCGGATGAGCGGGGACAATGCGCGTGCTCG
TGAAGGAAACGGCGCCCTGTCCGCTTCGGCCTCCGGCAGCGGCGGCGCCG
ACAGCGGTGTTGCTGCCGTGGTAGTTGCCGGCGCCGCCGGCGCGAGGAAG
GACGCCGGTAACCGGGCCTTGTTCTCTTCCGCGAGCAACAGCTATGGGGC
CGCACGGCGTGTGAGCACGCACAGCAGCGGCAGCGGGCGAGGCCGGGAGG
ACCAAGACGATGACGACGGCGACCAAGACGGTAGCGACACGGGTGGCGTC
CTTCTCGCCGCCGAGCTCAACGCGGGGAGTAACAGCAGCAGGGATCGACC
GCTGCCCACCTCCGAGCCCACGTCCGAAGCCACGGGTGGTTCGGCGGCGG
GGGCGGTGATCGATCGCCTGGCTTCCGCCTCTTCTCTCCGCGTAAGCACA
ACCCTGAGGACGGTCGGCGCTCGCCGTGGCGGCACCGGAGCCGGGGGCAG
GAGCGAAGATGCAAGGGTCCGTCGACAACGGCCCGCTGTTGCCGCTAGCA
CGGCGGCCGCTAGCATGGCGGCGGCAGCTCGCCGTGGCGACACTGGAGCC
GGCGGCAGGAGCGAGGACGCAAGGGTCCGTCGACAACGGCCCGCTGTTGC
CGCTAGCACGGCGGCCGCTAGCACGGCGGCTGCTTCTGCCGCCGTCACCG
CTGCCACTCGCCGAAGCAGCGGCGCGAAGGACACACGATCGACGAGGCTA
GCGCCGGCCACTTTTGCCGCCGCCGCCGCCGCCGCCGCTCATAGAAGCAG
CGACGCGAAGGACACACGGTCG
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