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Homology
BLAST of mRNA_L-elsbetiae_contig4835.12733.1 vs. uniprot
Match: D7G8M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M6_ECTSI) HSP 1 Score: 122 bits (305), Expect = 1.070e-27 Identity = 76/155 (49.03%), Postives = 82/155 (52.90%), Query Frame = 1
Query: 226 LPSQQTRTVLSGSLSRCSPVFSASSDTVFCACSSIVLGVSVETGEELLRLVGHAGDVTAMLVLPPGAYGAADSGGAAASTSARHQRLMTSSLDGTLRLWDVSADLMSLEGEAERCLRVLNVGMPVYQLFMGRQDSSGAALDVIIVTKEGTSSLHG 690
L S++TR VLSGSL RCSPVFS SSD VFCACSS VLGVSVETGE+ GEAERCLRV NVGMPVY LFMGRQD SG ALDVI+VTKEGT++LHG
Sbjct: 30 LASEETRAVLSGSLFRCSPVFSPSSDAVFCACSSSVLGVSVETGEQ---------------------------------------------------------------GEAERCLRVYNVGMPVYHLFMGRQDGSGTALDVIVVTKEGTAALHG 121
BLAST of mRNA_L-elsbetiae_contig4835.12733.1 vs. uniprot
Match: A0A6H5KD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD90_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 3.650e-11 Identity = 57/165 (34.55%), Postives = 73/165 (44.24%), Query Frame = 1
Query: 211 VALAALPSQQTRTVLSGSLSRCSPVFSASSDTVFCACSSIVLGVSVETGEELLRLVGHAGDVTAMLVLPPGAYGAADSGGAAASTSARHQRLMTSSLDGTLRLWDVSADLMSLEGEAERCLRVLNVGMPVYQLFMGRQDSSGAALDVIIVTKEGTSSLHGLQKDG 705
VA L S +TR VLSG L RCSPVFS SSDTVFCACSS VLGVSVETGE+ + + ++ C+ L+ ++G+A+DVI+VTKEGT+SLHG ++G
Sbjct: 61 VAPPILASDETRAVLSGCLFRCSPVFSPSSDTVFCACSSSVLGVSVETGEQTI--------------------------------------------------------ISNILNAQSSCVHRLSPSPANNFPPRDNTGNNGSAMDVIVVTKEGTASLHGYGEEG 169
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 124.8 |
Seed ortholog evalue | 7.4e-26 |
Seed eggNOG ortholog | 2880.D7G8M6 |
Preferred name | WDR75 |
KEGG ko | ko:K14552 |
KEGG Pathway | ko03008,map03008 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000462,GO:0000775,GO:0000776,GO:0000785,GO:0000792,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015630,GO:0015631,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070840,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000232,GO:2000234,GO:2001141 |
EggNOG free text desc. | rRNA processing |
EggNOG OGs | KOG1963@1,KOG1963@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko03009 |
Exons | 5 |
Model size | 979 |
Cds size | 975 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816474.9377508-CDS-L-elsbetiae_contig4835:965..1302 | 1622816474.9377508-CDS-L-elsbetiae_contig4835:965..1302 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 966..1302 - |
1691683586.6233227-CDS-L-elsbetiae_contig4835:965..1302 | 1691683586.6233227-CDS-L-elsbetiae_contig4835:965..1302 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 966..1302 - |
1622816474.949023-CDS-L-elsbetiae_contig4835:2039..2125 | 1622816474.949023-CDS-L-elsbetiae_contig4835:2039..2125 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 2040..2125 - |
1691683586.6431556-CDS-L-elsbetiae_contig4835:2039..2125 | 1691683586.6431556-CDS-L-elsbetiae_contig4835:2039..2125 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 2040..2125 - |
1622816474.9612894-CDS-L-elsbetiae_contig4835:2824..3013 | 1622816474.9612894-CDS-L-elsbetiae_contig4835:2824..3013 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 2825..3013 - |
1691683586.6547039-CDS-L-elsbetiae_contig4835:2824..3013 | 1691683586.6547039-CDS-L-elsbetiae_contig4835:2824..3013 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 2825..3013 - |
1622816474.9736378-CDS-L-elsbetiae_contig4835:3816..3883 | 1622816474.9736378-CDS-L-elsbetiae_contig4835:3816..3883 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 3817..3883 - |
1691683586.6655846-CDS-L-elsbetiae_contig4835:3816..3883 | 1691683586.6655846-CDS-L-elsbetiae_contig4835:3816..3883 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 3817..3883 - |
1622816474.9893887-CDS-L-elsbetiae_contig4835:4385..4681 | 1622816474.9893887-CDS-L-elsbetiae_contig4835:4385..4681 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 4386..4681 - |
1691683586.6755137-CDS-L-elsbetiae_contig4835:4385..4681 | 1691683586.6755137-CDS-L-elsbetiae_contig4835:4385..4681 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4835 4386..4681 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4835.12733.1 >prot_L-elsbetiae_contig4835.12733.1 ID=prot_L-elsbetiae_contig4835.12733.1|Name=mRNA_L-elsbetiae_contig4835.12733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=325bp
ALHSSRQASAARGEMQPPAARSKREGRRSSVSSAGRSSSSASSSTNKNRR ASSGGGQQLATVAGGGGAGAVALAALPSQQTRTVLSGSLSRCSPVFSASS DTVFCACSSIVLGVSVETGEELLRLVGHAGDVTAMLVLPPGAYGAADSGG AAASTSARHQRLMTSSLDGTLRLWDVSADLMSLEGEAERCLRVLNVGMPV YQLFMGRQDSSGAALDVIIVTKEGTSSLHGLQKDGGGGENDEARQKKKTA AGTVGAARSPNGVQGMAGGDDADLTSDDEEEEDDDSSSDDDNDDDVEVLD GGGSGDDDDVVEIDAEGGTASTKGS back to topmRNA from alignment at L-elsbetiae_contig4835:964..4681- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig4835.12733.1 ID=mRNA_L-elsbetiae_contig4835.12733.1|Name=mRNA_L-elsbetiae_contig4835.12733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3718bp|location=Sequence derived from alignment at L-elsbetiae_contig4835:964..4681- (Laminarionema elsbetiae ELsaHSoW15) GCTCTCCACTCAAGCCGACAAGCATCAGCAGCAAGGGGGGAGATGCAGCC
GCCTGCAGCGAGATCGAAGAGGGAGGGTCGTCGGTCCTCCGTTTCTTCTG
CTGGCCGCAGCAGCAGCAGCGCCTCGAGCAGCACCAACAAAAACCGCCGC
GCTAGCAGCGGTGGTGGACAGCAGCTCGCTACCGTTGCTGGCGGCGGCGG
GGCTGGTGCTGTGGCCTTGGCCGCGCTCCCTTCGCAACAGACGAGGACGG
TGCTCTCTGGGAGCCTTTCTCGCTGCTCTCCTGTCTTCAGCGCCTCGTAA
GTTGGTCCTGGTGCTCCTAAGTTGGTAGAGATGCCGGGTTGGCTGGAGAG
ATTTTGTAGCGTGGCAACAGCACGGGGTTGCTTGCTAACCAACCTGGTGT
GCTTCGACTCGCGTGTTTTTAACTCCAGCAGTGGCCATTTCAAGGCGTCC
ATCACGCACCAGCTCGGTGTAGATACCCGTCTGTTCGCTTTCGACGACCG
GAAGCGTGGCTTTGGGGCACCTCGCCGCAAAGGCTTTCATCATGAGCCTT
CGTATCTAACACAGAGATAAGAGTCTAGTCTAGATACTGGCAGCACGCGC
GCACGCGAACCTTCGGCCCACAGCGTGTTGCACAACAGTGAACCACAACG
CTCTATCCCTGCTGTCACCACGAACTCACTGTTTCCTGTACGATAGCCCT
GCTTCCACTACTGCAACAGCTTTGAGTGGCAGGCCGTGCTGATGGCTGTT
TTTGTAACCCCCCCGACCCGCTGCTCATCGACCAATGTCGTACCACAGGT
CCGACACAGTTTTCTGTGCGTGCAGCTCGATTGTGCTTGGTGTCAGCGTC
GAGACGGGCGAGGAGGTGCGCGCCTGTTTATTTTCATTCAGTTGGTAATT
TACATCATCAATACATCTCACACAGGTATTTAGGTACTTATTTACAAGCG
GCGTTGTTGTGCTCAAATCTAGATACCGGTAATCTTTTGTTCTCAGGAGG
AAAGGTCTCTTGCTATGCCAGCGGTAGGTAGCTCGGGACCGGGACGCCAC
ATGCAGCAGTGTATAGACTACATACATGTGTCCAACCTGTGAGGCAAGCC
TTTCAGTGGGAGCTGTTGTAGACACATGTGTAACCCTGTATCGAGGAGGA
AATATCGCTCTCTTGCCAGCGGTAGGTAGCTCCAGACCGGGACGCCACAT
GCAGCAGTCTACCGTAGGTGACACAAGATACCACACCCCCTGGGCCGAAT
TTTAGAGCTCCATTGCTCCGTAACGAAGAGGGTGCCAGCACCAAACGACA
CATTTTCGGACAGCCCTGGACTAGATCTTTCCAACGCATCCTCTTTCGGC
ACTGGCGCTGTTCTTGCTGGGGAGGAATCGAGCTTTGAAAATATGTCCAA
GGGGTGTGGTATCTTGTGTCACCTACGGTAGTTTATGGGCATATATATGT
CCAGCCTGTGAGGCAAGTCTTTCCAGTGGGAGCTGTTGTAGACACACTAA
CCCTCCACCACCGCCCCCAGCAGCTATATACGGAGTGTACAAAAGGCACA
GCAATCTCTCGCTTCCCAAGCCGACACCGCTTTGACCCCCTTGACCAACG
ACAACACTCGACCCTGACGCCTGAACACCTCACCCCCCTTCCCCCTCCCT
CTCGTCCACATGGCAAAGCTTCTGCGGCTGGTGGGGCACGCCGGGGATGT
GACCGCCATGCTCGTGCTGCCACCCGGGGCGTACGGGGCCGCTGACAGCG
GCGGCGCAGCTGCCTCCACTTCCGCTCGACACCAGCGCCTCATGACCTCC
AGCCTGGACGGGACGCTGAGGCTGTGGGATGTCTCCGCCGACCTCATGTC
TCTCGAGGTGGGCTGGGAGTTGCTCCAGTGTGTATCGGCCCGCCCTTTTG
TGTCCACACTTTATGAAAAACGGAAATTTTAAGTTTGGGCCGAGGCTAGG
TTTCTCATGCGAGGCCAAAGATGATCGCCGTCTCTTTAATTAATGTATAC
AAATGTCAGCAGTCTACGTCCGGTTTGTGAAAATATCGTTCCAGAGGGAT
CTGTTGTAGGCATACTAACCCCCCTTTTCCATCCCAAGATATACTCACAC
AAAATCCGTAATCCATATAATATGCCATACATAGATACATATATACAAGT
TCGTTGGTGAAAGTACTCTTTCAGAAGTCGGTTGCAGTGTAAACGTGAGC
GCATCAAGCATTTGGCATGGTACAATGTATATGGTGTAGGTAGGTGCTAT
CAGGTCATCATTTGTAGGAGGCTGTACACTAATGATTTTGGGTTACAGTA
GTAGTAGCGGCGTGAGGGATTAGTTGTTCATAGTGATGTTCTCGTCACGA
AGCCCCTCCCCCCCTTCCGCCCCCCCCCGAAATCTCAGTCTGCTGTTTGC
CTTGTCGTAAAAAATTACATGTTATTTCTACGAAAAGGAATACTCCGGAT
TAGGTCCCAGCCTCGGAAATGAAGGTGGAAGGAAGCCCGCATCAGACGTT
TTTTTTTTTCACCATCACAATGCTCGCTCTCTTTTTCTCTCTATTCGCGC
GCGCAGGGAGAGGCGGAGAGGTGTCTCCGTGTCTTGAACGTGGGGATGCC
GGTGTACCAGCTCTTCATGGGAAGACAAGACAGCAGCGGGGCGTGAGTGC
CGTGTGTGTTGTCTGCTCTCTCCTGGTGTTGGTGTTGTTGTTGTTGTTGT
TTTATCTTTTTCCGTATGTTGCTGCCGTGGTCGTACTTTCACGAAGCTTT
GCGCTCTACAAGGTACCTACAGCAGTGTAACGGGGTAGCAGGCCTTTATT
GTCGTGTGCACGTGGCGCCCTATTCGACGGGTTGTTGGCTTTTGCGGCTT
TTCTTTTCGTCTGGAAAATCGTCGTCTGCGGTTGTAGTCCATATATTACT
CATGATAAACTTGTGAATAGCATCTTCGGGCTACGGAATGCTTTGTGAAT
ATATTCAAAGGATATATTTGTCACGGAATGCTTGCTGATGGAGCAAGTTT
ACTGTTGCACGGCGCCCGAGAGGCGCGATTCCCGCTAGAGCGAGCTGCCG
GCAGGGCAGAAGGCAGCACCACACGCCACGGGGAACGGTCATAGTGGCGG
GCCGGTGATAATCGTACACGCATACCTGTCGCACAATAGAATCAGCGTGC
AGTCCTTTCGGCCTTTTGGTACGAAAAGAGTGTTTTTTTTGTTTTTGTTT
CCTGTGTCGTGTTTTCCCTCCCGGTGACGCGCGCCCGCCTGGCTTCCTCG
ATCCCGCTTTTCGCTTGAAACAGCCAACCACCCACACGCTCTCTTTTCGT
CTGCCTCCCGCCCGCGATTGCACTGCTGCTGCTGCTGCTGCTGCTGTGTG
CGTGTTCACTATTGTCTGATGGTGAGCAGAGCCCTGGACGTGATCATCGT
CACCAAGGAGGGAACCTCGTCTCTGCACGGGCTGCAGAAGGACGGCGGCG
GCGGTGAGAACGACGAGGCGAGACAGAAGAAGAAGACGGCGGCGGGGACG
GTGGGGGCCGCGAGGTCCCCAAACGGCGTCCAAGGCATGGCTGGGGGCGA
TGACGCCGACCTTACCTCGGACGACGAGGAGGAGGAGGACGACGATTCTT
CTTCTGACGACGACAACGACGACGATGTCGAAGTCCTCGACGGAGGCGGC
AGCGGTGACGACGACGATGTTGTTGAGATCGATGCCGAGGGGGGCACTGC
CTCGACAAAGGGCTCGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig4835:964..4681- >mRNA_L-elsbetiae_contig4835.12733.1 ID=mRNA_L-elsbetiae_contig4835.12733.1|Name=mRNA_L-elsbetiae_contig4835.12733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1950bp|location=Sequence derived from alignment at L-elsbetiae_contig4835:964..4681- (Laminarionema elsbetiae ELsaHSoW15) GCTCTCCACTCAAGCCGACAAGCATCAGCAGCAAGGGGGGAGATGCAGCC GCCTGCAGCGAGATCGAAGAGGGAGGGTCGTCGGTCCTCCGTTTCTTCTG CTGGCCGCAGCAGCAGCAGCGCCTCGAGCAGCACCAACAAAAACCGCCGC GCTAGCAGCGGTGGTGGACAGCAGCTCGCTACCGTTGCTGGCGGCGGCGG GGCTGGTGCTGTGGCCTTGGCCGCGCTCCCTTCGCAACAGACGAGGACGG TGCTCTCTGGGAGCCTTTCTCGCTGCTCTCCTGTCTTCAGCGCCTCGCTC TCCACTCAAGCCGACAAGCATCAGCAGCAAGGGGGGAGATGCAGCCGCCT GCAGCGAGATCGAAGAGGGAGGGTCGTCGGTCCTCCGTTTCTTCTGCTGG CCGCAGCAGCAGCAGCGCCTCGAGCAGCACCAACAAAAACCGCCGCGCTA GCAGCGGTGGTGGACAGCAGCTCGCTACCGTTGCTGGCGGCGGCGGGGCT GGTGCTGTGGCCTTGGCCGCGCTCCCTTCGCAACAGACGAGGACGGTGCT CTCTGGGAGCCTTTCTCGCTGCTCTCCTGTCTTCAGCGCCTCGTCCGACA CAGTTTTCTGTGCGTGCAGCTCGATTGTGCTTGGTGTCAGCGTCGAGACG GGCGAGGAGGTCCGACACAGTTTTCTGTGCGTGCAGCTCGATTGTGCTTG GTGTCAGCGTCGAGACGGGCGAGGAGCTTCTGCGGCTGGTGGGGCACGCC GGGGATGTGACCGCCATGCTCGTGCTGCCACCCGGGGCGTACGGGGCCGC TGACAGCGGCGGCGCAGCTGCCTCCACTTCCGCTCGACACCAGCGCCTCA TGACCTCCAGCCTGGACGGGACGCTGAGGCTGTGGGATGTCTCCGCCGAC CTCATGTCTCTCGAGCTTCTGCGGCTGGTGGGGCACGCCGGGGATGTGAC CGCCATGCTCGTGCTGCCACCCGGGGCGTACGGGGCCGCTGACAGCGGCG GCGCAGCTGCCTCCACTTCCGCTCGACACCAGCGCCTCATGACCTCCAGC CTGGACGGGACGCTGAGGCTGTGGGATGTCTCCGCCGACCTCATGTCTCT CGAGGGAGAGGCGGAGAGGTGTCTCCGTGTCTTGAACGTGGGGATGCCGG TGTACCAGCTCTTCATGGGAAGACAAGACAGCAGCGGGGCGGAGAGGCGG AGAGGTGTCTCCGTGTCTTGAACGTGGGGATGCCGGTGTACCAGCTCTTC ATGGGAAGACAAGACAGCAGCGGGGCAGCCCTGGACGTGATCATCGTCAC CAAGGAGGGAACCTCGTCTCTGCACGGGCTGCAGAAGGACGGCGGCGGCG GTGAGAACGACGAGGCGAGACAGAAGAAGAAGACGGCGGCGGGGACGGTG GGGGCCGCGAGGTCCCCAAACGGCGTCCAAGGCATGGCTGGGGGCGATGA CGCCGACCTTACCTCGGACGACGAGGAGGAGGAGGACGACGATTCTTCTT CTGACGACGACAACGACGACGATGTCGAAGTCCTCGACGGAGGCGGCAGC GGTGACGACGACGATGTTGTTGAGATCGATGCCGAGGGGGGCACTGCCTC GACAAAGGGCTCGAGCCCTGGACGTGATCATCGTCACCAAGGAGGGAACC TCGTCTCTGCACGGGCTGCAGAAGGACGGCGGCGGCGGTGAGAACGACGA GGCGAGACAGAAGAAGAAGACGGCGGCGGGGACGGTGGGGGCCGCGAGGT CCCCAAACGGCGTCCAAGGCATGGCTGGGGGCGATGACGCCGACCTTACC TCGGACGACGAGGAGGAGGAGGACGACGATTCTTCTTCTGACGACGACAA CGACGACGATGTCGAAGTCCTCGACGGAGGCGGCAGCGGTGACGACGACG ATGTTGTTGAGATCGATGCCGAGGGGGGCACTGCCTCGACAAAGGGCTCG back to top
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