mRNA_L-elsbetiae_contig4832.12731.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4832.12731.1
Unique NamemRNA_L-elsbetiae_contig4832.12731.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4832.12731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4832contigL-elsbetiae_contig4832:11644..12098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816474.86341-CDS-L-elsbetiae_contig4832:11643..120961622816474.86341-CDS-L-elsbetiae_contig4832:11643..12096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4832 11644..12096 +
1691683586.5761256-CDS-L-elsbetiae_contig4832:11643..120961691683586.5761256-CDS-L-elsbetiae_contig4832:11643..12096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4832 11644..12096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4832.12731.1prot_L-elsbetiae_contig4832.12731.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4832 11644..12096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4832.12731.1

>prot_L-elsbetiae_contig4832.12731.1 ID=prot_L-elsbetiae_contig4832.12731.1|Name=mRNA_L-elsbetiae_contig4832.12731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
SSPPSCVQSRTPACRYHPRHIPAAWCNPDGHTSFSLSPSSPPSCVQSRTP
ACRHRPRHITGAWYNPDGRTSCSSRPSSRPSCVPSRTPACRYRPRHMTPA
WCNRCGYNYVASFLDFSAALRAVKHKAVIRKMLSRTCKLHSHCQNSRACQ
F
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mRNA from alignment at L-elsbetiae_contig4832:11644..12098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4832.12731.1 ID=mRNA_L-elsbetiae_contig4832.12731.1|Name=mRNA_L-elsbetiae_contig4832.12731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=455bp|location=Sequence derived from alignment at L-elsbetiae_contig4832:11644..12098+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCCCCTCCTTCTTGTGTGCAGAGCAGAACTCCGGCTTGCCGCTACCA
TCCACGCCATATACCGGCTGCTTGGTGCAACCCTGATGGCCACACCTCTT
TCTCTTTAAGTCCATCATCCCCTCCTTCTTGTGTGCAGAGCAGAACTCCG
GCTTGCCGCCACCGGCCACGCCATATAACGGGCGCTTGGTACAACCCTGA
TGGCCGCACCTCTTGTTCTTCACGTCCGTCATCCCGTCCTTCTTGTGTGC
CGAGCAGAACTCCGGCTTGCCGCTACCGGCCACGCCATATGACGCCTGCT
TGGTGCAACCGCTGTGGATACAATTACGTGGCATCCTTCCTGGATTTCTC
GGCTGCTCTGCGGGCCGTAAAACACAAGGCGGTGATACGGAAGATGTTGT
CACGCACGTGTAAGCTGCACTCGCACTGCCAGAACTCCAGAGCGTGCCAA
TTTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4832:11644..12098+

>mRNA_L-elsbetiae_contig4832.12731.1 ID=mRNA_L-elsbetiae_contig4832.12731.1|Name=mRNA_L-elsbetiae_contig4832.12731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig4832:11644..12098+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCCCCTCCTTCTTGTGTGCAGAGCAGAACTCCGGCTTGCCGCTACCA
TCCACGCCATATACCGGCTGCTTGGTGCAACCCTGATGGCCACACCTCTT
TCTCTTTAAGTCCATCATCCCCTCCTTCTTGTGTGCAGAGCAGAACTCCG
GCTTGCCGCCACCGGCCACGCCATATAACGGGCGCTTGGTACAACCCTGA
TGGCCGCACCTCTTGTTCTTCACGTCCGTCATCCCGTCCTTCTTGTGTGC
CGAGCAGAACTCCGGCTTGCCGCTACCGGCCACGCCATATGACGCCTGCT
TGGTGCAACCGCTGTGGATACAATTACGTGGCATCCTTCCTGGATTTCTC
GGCTGCTCTGCGGGCCGTAAAACACAAGGCGGTGATACGGAAGATGTTGT
CACGCACGTGTAAGCTGCACTCGCACTGCCAGAACTCCAGAGCGTGCCAA
TTTTCATCCCCTCCTTCTTGTGTGCAGAGCAGAACTCCGGCTTGCCGCTA
CCATCCACGCCATATACCGGCTGCTTGGTGCAACCCTGATGGCCACACCT
CTTTCTCTTTAAGTCCATCATCCCCTCCTTCTTGTGTGCAGAGCAGAACT
CCGGCTTGCCGCCACCGGCCACGCCATATAACGGGCGCTTGGTACAACCC
TGATGGCCGCACCTCTTGTTCTTCACGTCCGTCATCCCGTCCTTCTTGTG
TGCCGAGCAGAACTCCGGCTTGCCGCTACCGGCCACGCCATATGACGCCT
GCTTGGTGCAACCGCTGTGGATACAATTACGTGGCATCCTTCCTGGATTT
CTCGGCTGCTCTGCGGGCCGTAAAACACAAGGCGGTGATACGGAAGATGT
TGTCACGCACGTGTAAGCTGCACTCGCACTGCCAGAACTCCAGAGCGTGC
CAATTT
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