mRNA_L-elsbetiae_contig483.12728.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: D7FV33_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV33_ECTSI) HSP 1 Score: 338 bits (867), Expect = 9.390e-111 Identity = 173/208 (83.17%), Postives = 183/208 (87.98%), Query Frame = 3 Query: 39 MKTTGAAVLSLVASTQAFHVPMLATRTPRTLSMSAAASPTAPLSDAEALASLEAIGGYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKHQQSGDTTPFYDPFKGWPKTEVQQEKMKMRELKNGRAAMLCWASFVSASLIPGSVPDFCLPF 662 MK TGA VL +VASTQAFH+P + S ++ AS PLSDAEA+ASLEAIGGYDVET+GKPLDPL+LAKYIPAETLRKYETVH RVAMLACVGYAFPQIFGMFDATDV SANGIDAL QTAP A AQI+GACGI EAAQWKHQQSGDTTPFYDPFKGWPKTE QQEKMKMRELKNGRAAMLCWASFVSA+LIPGSVPDF LPF Sbjct: 1 MKITGATVLGMVASTQAFHMPANVKPSVARRSSTSLASALEPLSDAEAMASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAAQWKHQQSGDTTPFYDPFKGWPKTEKQQEKMKMRELKNGRAAMLCWASFVSAALIPGSVPDFALPF 208
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: A0A7S0ASU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASU6_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.590e-29 Identity = 69/149 (46.31%), Postives = 95/149 (63.76%), Query Frame = 3 Query: 207 GYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKH-----QQSGDTTPFYDPFKGWPKTEVQQEKMKMRELKNGRAAMLCWASFVSASLIPGS 638 G D+E+ GK DPLNLA++IPA+ R+ E + R AMLA VG+ FP G FD+ DVTS + + A+++ P AQ V CG EA ++K +G+ P D KG+PK E ++ KM+++ELKNGR AM+ ASF+SA IPGS Sbjct: 49 GVDLESGGKFFDPLNLAQWIPAKWARETELANGRSAMLATVGWFFPYTLGTFDSQDVTSTDPMGAIMEADPQWWAQFVILCGTFEAYKYKKALEGKSYTGNGEPVIDYLKGYPKEEDERRKMELKELKNGRLAMIGVASFLSAHFIPGS 197
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: A0A7S1H281_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H281_9STRA) HSP 1 Score: 120 bits (301), Expect = 9.330e-28 Identity = 69/156 (44.23%), Postives = 98/156 (62.82%), Query Frame = 3 Query: 195 EAIGGYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKHQ-----QSGDTTPFYDPFKGWPK-TEVQQEKMKMRELKNGRAAMLCWASFVSASLIPGSVP 644 E++ G DVET K DP L+++IPAE RK E + R AMLA VG+ +P+ FG F + DVT+ + I+A++Q P AQ + CG+ E +++ + +GD P D K W K ++ ++E +++RELKNGR AML ASF SA IPGSVP Sbjct: 35 ESLVGMDVETGKKFFDPWELSQWIPAEHARKAELANGRSAMLATVGWFWPKFFGTFASDDVTTTDPIEAVMQADPQWWAQFIVLCGVAEFVKYQGELEGKSYTGDGEPVLDWTKTWSKLSDAKKEDIRLRELKNGRLAMLGIASFFSAHFIPGSVP 190
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: A0A7S2R2M8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2M8_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.500e-27 Identity = 75/180 (41.67%), Postives = 104/180 (57.78%), Query Frame = 3 Query: 135 MSAAASPTAPLSDAEALASLEAIG-----GYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKHQQSGDT-----TPFYDPFKGWPKTEVQQEKMKMRELKNGRAAMLCWASFVSASLIPGSVP 644 M+++A+ AP + + ++ +L+A G DVET K DP L+ YIPA+ R+ E + R AMLA VGY FP FG FD+TDVT+ + IDA+LQ P AQ + CG E +++ G T P D +PK E ++ M ++ELKNGR AM+ A FVS IPG+VP Sbjct: 10 MASSAAAFAPATKSASMTALKASDYDSMIGIDVETGKKFFDPWGLSGYIPAKWAREAELSNGRSAMLATVGYVFPAYFGTFDSTDVTTTDPIDAILQADPQWWAQFILLCGAFEGVKYRCALEGKTFTGIGEPAVDYANLYPKEEAKRADMHLKELKNGRLAMIGIAGFVSNHFIPGAVP 189
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: A0A7R9W903_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W903_9STRA) HSP 1 Score: 119 bits (297), Expect = 3.500e-27 Identity = 67/159 (42.14%), Postives = 93/159 (58.49%), Query Frame = 3 Query: 186 ASLEAIGGYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKHQQSGDTT-----PFYDPFKGWPKTEVQQEKMKMRELKNGRAAMLCWASFVSASLIPGSVPD 647 A E + G DVET K DP + YIPA+ R+ E + R AMLA VG+ +PQIFG FD+TDVT+ + I A + P AQ + CG +EA +++ G ++ P D + +P E + M+++ELKNGR AM+ AS+ SA IPGSVP Sbjct: 38 ADYEGMVGIDVETGNKFFDPCGFSNYIPAKWAREAELANGRSAMLASVGWLWPQIFGTFDSTDVTTTDPIKAFSEADPQWWAQFIIFCGTIEAYKYRKGLEGKSSTGGGEPAVDWMRSYPADEEGRRAMELKELKNGRLAMIAVASYFSAHFIPGSVPS 196
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: A0A7S0PIU0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PIU0_9STRA) HSP 1 Score: 118 bits (295), Expect = 5.620e-27 Identity = 72/178 (40.45%), Postives = 106/178 (59.55%), Query Frame = 3 Query: 138 SAAASPTAP--LSDAEALASLEAIGGYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKHQQS-------GDTTPFYDPFKGWPKTEVQQEKMKMRELKNGRAAMLCWASFVSASLIPGSVP 644 SA A TAP + +A + E + G VET GK DP +++Y+PA+ R+ E + R AMLA VG+ +PQ+ G FD+ DVT+ + IDA++Q P AQ + CG++E WK+ ++ G P D K +P ++ +++ +ELKN R AM+ +ASFVSA IPGSVP Sbjct: 14 SAFAPNTAPKVTTSLKAASDFEGMTGISVETGGKFFDPWGVSEYMPADWAREVELSNGRSAMLATVGWFWPQVVGTFDSNDVTTTDPIDAIMQADPQWWAQFIIFCGVIE--NWKYNKAKEGKSYTGGGEPAVDWMKLYPSDPAKRLELEEKELKNARLAMIGFASFVSAHFIPGSVP 189
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: A0A7S2D2F8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2F8_9STRA) HSP 1 Score: 118 bits (295), Expect = 8.350e-27 Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 3 Query: 207 GYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKHQQSGDTTPFYDPFKGWPKTEVQQEKMKMRELKNGRAAMLCWASFVSASLIPGSVP 644 G VE KP DPL LA + + +R E + RVAMLA VG+ +PQ+FG+F++ DVT+ + I A+ Q AP Q+ G E+ ++KH+ SG P +DP PK V++ ELKNGR AML A++ SA IPGSVP Sbjct: 59 GATVEVGKKPFDPLGLAAWRDFDEMRACELKNGRVAMLASVGWVWPQMFGLFESDDVTTTDPIAAITQVAPEGWIQMFLLAGCFESLEYKHKMSGTDKPLWDPLDLMPKDPVKKAAKMESELKNGRLAMLSVAAYASAHFIPGSVP 204
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: A0A7S2RJJ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJJ1_9STRA) HSP 1 Score: 116 bits (290), Expect = 3.040e-26 Identity = 64/146 (43.84%), Postives = 86/146 (58.90%), Query Frame = 3 Query: 207 GYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKHQQSGDTTPFYDPFKGWPKTEVQQEKMKMRELKNGRAAMLCWASFVSASLIPGSVP 644 G E K DPL LA+Y + LR ET + RVAMLA VG+ +PQIFG + V + + I+ L A AQ++ + E +KH+QSG T P +DP + PK E ++ M +ELKNGR AML +A+FVS IPG+VP Sbjct: 48 GATTEVGNKAFDPLKLAQYRDFDELRACETRNGRVAMLASVGWVWPQIFGTWAGGPVKTVDPIETLSAVPVAAWAQMILLASVFEVIDFKHKQSGSTEPVWDPLQLLPKEEKAKKAMMEKELKNGRLAMLAFAAFVSEHFIPGAVP 193
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: A0A1Z5KCJ7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCJ7_FISSO) HSP 1 Score: 110 bits (274), Expect = 4.000e-24 Identity = 64/159 (40.25%), Postives = 96/159 (60.38%), Query Frame = 3 Query: 186 ASLEAIGGYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKHQ-----QSGDTTPFYDPFKGWPKTE-VQQEKMKMRELKNGRAAMLCWASFVSASLIPGSVP 644 A + ++ G E + DPL L ++ AE LRK E + R AMLA VG+ +P+I G FD+ DVT+ + IDA+LQ P AQ + CG++E +++ + +GD D K W K + ++ M+++ELKNGR AM+ +AS+V+A IPGSVP Sbjct: 34 AEIASLPGISNECGNRVFDPLELGQWADAEFLRKAELSNGRSAMLANVGWFWPKIVGTFDSDDVTTTDPIDAILQADPQWWAQFLLLCGVIEGVKYRAELEGKSYTGDGPAAIDWAKQWDKLDKTKKADMRLKELKNGRLAMIGFASYVAAYFIPGSVP 192
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Match: B7G8E5_PHATC (Fucoxanthin chlorophyll a/c protein, deviant n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8E5_PHATC) HSP 1 Score: 109 bits (273), Expect = 6.230e-24 Identity = 67/161 (41.61%), Postives = 98/161 (60.87%), Query Frame = 3 Query: 180 ALASLEAIGGYDVETMGKPLDPLNLAKYIPAETLRKYETVHSRVAMLACVGYAFPQIFGMFDATDVTSANGIDALLQTAPLALAQIVGACGIVEAAQWKHQ-----QSGDTTPFYDPFKGWPKTEV-QQEKMKMRELKNGRAAMLCWASFVSASLIPGSVP 644 A A L+ + G D+ET K DP+ LA++ PA+ LRK E + R AMLA VG+ +P+I G FD+ DVT+ + I A+ + AQ CG++EA +++ + +G+ D K W K Q+E M+++ELKNGR AML +AS+V+ IPGSVP Sbjct: 33 ATAELDNMLGVDIETGKKIFDPVGLAQWAPADFLRKAELSNGRSAMLANVGWFWPKIVGTFDSQDVTTTDPIKAIAEADLQWWAQFFVFCGMLEAVKYRGELEGKSYTGEGPAVIDWAKQWDKLNADQKESMRLKELKNGRLAMLGFASYVANYYIPGSVP 193 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig483.12728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig483.12728.1 >prot_L-elsbetiae_contig483.12728.1 ID=prot_L-elsbetiae_contig483.12728.1|Name=mRNA_L-elsbetiae_contig483.12728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp MKTTGAAVLSLVASTQAFHVPMLATRTPRTLSMSAAASPTAPLSDAEALAback to top mRNA from alignment at L-elsbetiae_contig483:17279..23502+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig483.12728.1 ID=mRNA_L-elsbetiae_contig483.12728.1|Name=mRNA_L-elsbetiae_contig483.12728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6224bp|location=Sequence derived from alignment at L-elsbetiae_contig483:17279..23502+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig483:17279..23502+ >mRNA_L-elsbetiae_contig483.12728.1 ID=mRNA_L-elsbetiae_contig483.12728.1|Name=mRNA_L-elsbetiae_contig483.12728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig483:17279..23502+ (Laminarionema elsbetiae ELsaHSoW15)back to top |