mRNA_L-elsbetiae_contig483.12727.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig483.12727.1
Unique NamemRNA_L-elsbetiae_contig483.12727.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig483.12727.1 vs. uniprot
Match: A0A6H5J9P0_9PHAE (Oxidoreductase-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.450e-27
Identity = 79/121 (65.29%), Postives = 85/121 (70.25%), Query Frame = 3 
Query:  282 PKPPRKTAQAVAMEEFAALERKFAPPXXXXXXXXXXXXXXXXXXXLG--------SAPGVAEPHRQQRGLRKARSLPSTKPEEPDAQECCGNGCATCVWIGYWEELQAWEEAEREREEVPP 620
            P P  K  QAVAMEEFA LERK A P   XXXXXXXXXXXXXXXX          ++ G A+P  Q   +R       TKPEEP+A+ECCGNGCATCVWIGYWEELQAWEEAEREREE PP
Sbjct:  111 PPPLLKVPQAVAMEEFADLERKLASPREAXXXXXXXXXXXXXXXXXXXXXXXXQQASAGAAQPDGQSSRVRNTL----TKPEEPEAEECCGNGCATCVWIGYWEELQAWEEAEREREEAPP 227
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BLAST of mRNA_L-elsbetiae_contig483.12727.1 vs. uniprot
Match: D7FV34_ECTSI (Oxidoreductase-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV34_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.170e-26
Identity = 75/118 (63.56%), Postives = 81/118 (68.64%), Query Frame = 3 
Query:  291 PRKTAQAVAMEEFAALERKFAPPXXXXXXXXXXXXXXXXXXXLG--------SAPGVAEPHRQQRGLRKARSLPSTKPEEPDAQECCGNGCATCVWIGYWEELQAWEEAEREREEVPP 620
            P K+ QAVAMEEFA LERK A P      XXXXXXXXXXXXX          ++ G A+P  Q   LR       TKPEEP+A+ECCGNGCATCVWIGYWEELQAWEEA REREE PP
Sbjct:  114 PPKSPQAVAMEEFADLERKLASPREAPRRXXXXXXXXXXXXXXXXXXXXXQQASAGGAQPVGQSSRLRNTL----TKPEEPEAEECCGNGCATCVWIGYWEELQAWEEAGREREEAPP 227
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BLAST of mRNA_L-elsbetiae_contig483.12727.1 vs. uniprot
Match: A0A0V0QL44_PSEPJ (Oxidoreductase-like domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QL44_PSEPJ)

HSP 1 Score: 55.8 bits (133), Expect = 8.260e-6
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 3 
Query:  495 KPEEPDAQECCGNGCATCVWIGYWEELQAWEE 590
            KPEEPD +ECCG GCA CVW  Y+E+L  +EE
Sbjct:  127 KPEEPDPEECCGQGCAVCVWDLYYEKLDKYEE 158
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BLAST of mRNA_L-elsbetiae_contig483.12727.1 vs. uniprot
Match: UPI0009FAE628 (hypothetical protein n=1 Tax=Neptunomonas phycophila TaxID=1572645 RepID=UPI0009FAE628)

HSP 1 Score: 51.2 bits (121), Expect = 2.240e-5
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  495 KPEEPDAQECCGNGCATCVWIGYWEELQAWEEAERER 605
            KP  P   +CC + C  CVW  Y+EEL+AW EAE++R
Sbjct:    4 KPTPPGEYDCCESACEPCVWDVYYEELRAWNEAEKQR 40
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BLAST of mRNA_L-elsbetiae_contig483.12727.1 vs. uniprot
Match: A0A7X0DHX2_9GAMM (Oxidoreductase-like domain-containing protein n=2 Tax=Rhodanobacter sp. MP7CTX1 TaxID=2723084 RepID=A0A7X0DHX2_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 8.540e-5
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 3 
Query:  486 PSTKPEEPDAQECCGNGCATCVWIGYWEELQAWEEA 593
            P T+P EPDA +CCG GCA CV+  Y E L+ +E A
Sbjct:   56 PPTRPVEPDADDCCGEGCARCVFDAYGEALERYEAA 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig483.12727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5J9P0_9PHAE3.450e-2765.29Oxidoreductase-like domain-containing protein n=1 ... [more]
D7FV34_ECTSI5.170e-2663.56Oxidoreductase-like domain-containing protein n=1 ... [more]
A0A0V0QL44_PSEPJ8.260e-665.63Oxidoreductase-like domain-containing protein n=1 ... [more]
UPI0009FAE6282.240e-551.35hypothetical protein n=1 Tax=Neptunomonas phycophi... [more]
A0A7X0DHX2_9GAMM8.540e-555.56Oxidoreductase-like domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig483contigL-elsbetiae_contig483:12121..16116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOxidoreductase-like, N-terminal
Ec32 orthologEc-12_005000.1
Exons3
Model size807
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig483.12727.1prot_L-elsbetiae_contig483.12727.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig483 12126..15932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816474.4133437-UTR-L-elsbetiae_contig483:12120..121251622816474.4133437-UTR-L-elsbetiae_contig483:12120..12125Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig483 12121..12125 +
1691683586.219068-UTR-L-elsbetiae_contig483:12120..121251691683586.219068-UTR-L-elsbetiae_contig483:12120..12125Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig483 12121..12125 +
1622816474.4618428-UTR-L-elsbetiae_contig483:15932..161161622816474.4618428-UTR-L-elsbetiae_contig483:15932..16116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig483 15933..16116 +
1691683586.2595568-UTR-L-elsbetiae_contig483:15932..161161691683586.2595568-UTR-L-elsbetiae_contig483:15932..16116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig483 15933..16116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816474.423658-CDS-L-elsbetiae_contig483:12125..126231622816474.423658-CDS-L-elsbetiae_contig483:12125..12623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 12126..12623 +
1691683586.2292168-CDS-L-elsbetiae_contig483:12125..126231691683586.2292168-CDS-L-elsbetiae_contig483:12125..12623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 12126..12623 +
1622816474.4339395-CDS-L-elsbetiae_contig483:14664..147261622816474.4339395-CDS-L-elsbetiae_contig483:14664..14726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 14665..14726 +
1691683586.2381089-CDS-L-elsbetiae_contig483:14664..147261691683586.2381089-CDS-L-elsbetiae_contig483:14664..14726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 14665..14726 +
1622816474.446168-CDS-L-elsbetiae_contig483:15874..159321622816474.446168-CDS-L-elsbetiae_contig483:15874..15932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 15875..15932 +
1691683586.2468946-CDS-L-elsbetiae_contig483:15874..159321691683586.2468946-CDS-L-elsbetiae_contig483:15874..15932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 15875..15932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig483.12727.1

>prot_L-elsbetiae_contig483.12727.1 ID=prot_L-elsbetiae_contig483.12727.1|Name=mRNA_L-elsbetiae_contig483.12727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
MSFTAVRLRPCITSEDGFRRAISCSRTGNMGSFFLGGERNLSIGGTSTRN
YIPWSPSTSEGKTSLNSPSATEGVQHHPHQQQHQQPLSPLVNPKPPRKTA
QAVAMEEFAALERKFAPPRRKTPEEIAMEEFAALERKLGSAPGVAEPHRQ
QRGLRKARSLPSTKPEEPDAQECCGNGCATCVWIGYWEELQAWEEAERER
EEVPP*
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mRNA from alignment at L-elsbetiae_contig483:12121..16116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig483.12727.1 ID=mRNA_L-elsbetiae_contig483.12727.1|Name=mRNA_L-elsbetiae_contig483.12727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3996bp|location=Sequence derived from alignment at L-elsbetiae_contig483:12121..16116+ (Laminarionema elsbetiae ELsaHSoW15)
CACAGATGTCGTTTACCGCTGTTCGATTGAGGCCGTGTATCACCTCTGAA
GACGGCTTCAGACGCGCAATTAGTTGTAGTAGAACAGGAAATATGGGTAG
TTTTTTTCTCGGAGGCGAACGGAACCTGTCAATAGGGGGCACGAGCACGA
GGAACTACATCCCTTGGTCACCTTCTACGAGCGAGGGCAAGACATCATTG
AACTCACCGTCGGCGACAGAAGGGGTGCAACATCACCCTCATCAGCAGCA
ACATCAACAGCCACTTTCACCGTTGGTTAATCCCAAGCCCCCACGAAAGA
CGGCTCAGGCCGTAGCAATGGAGGAGTTCGCTGCGTTGGAGCGGAAGTTC
GCCCCACCGAGGAGAAAAACGCCGGAGGAAATCGCGATGGAAGAGTTTGC
GGCTCTGGAAAGAAAACTTGGCTCCGCCCCTGGCGTTGCCGAACCCCACC
GGCAGCAGAGGGGTTTGAGAAAGGCTCGCTCGTTGCCTTCAACGAAACCT
GAGGTACTGGAGTCGTCTATGTAGGTATGTAGTCTACATACCGTAGGTGA
CATAAGATAAGACACCCCCTGGACCGATTTTGAAAGCTTGGTTACTCCGC
AACGAATACAATTCTAACCATAAACGCCACATTTTCGGACAGCTCTCGAC
GAGATCTTTCCAACGCCGCCCTTTTCGGGACTGACGCCCTGCTTGCTGTG
GAGTACTTGAGCTTTGAAAATCGGCCCGGGGGTGTCTTATCTTACGTCAC
CTACGGTATCTAGATTAGAGGCACAGCACAGCACTAGAAGGTAGAGTAGA
TGTAGACAGTAGTGTACAGATTCGGCCTCAGGGGCGGAGAGTTCTATCGA
AACGATGTGTGTATCTGTACACATGTAGATATTTACTCCCAACCGGGTAA
CACCTGGTGACTACCGTACAATATATCGATGACAGGGTGATGTTTTTGAA
GAACATACAGGGTCATCAGCTTAGACTATCTATACCCTGGCATTGCAGTC
AGAGGCTGTGTGTCCTCGACGCTAATCGAGATGGTGACATGGCGGGAATG
CAGTATAGGTGTAAGACACTTCCGTGTAAGCGAAGATGAAGTGACGTTTC
AAGACCGCGCTTGGTTGGCCAATACACACAAGTACAATCCACAGAACAAA
CAGGGGTCCAGACGACGGGGTACATAGCTTCCAGAGATGATCACAACAGC
TAACATATCTCTATGACCCGGAGAGATTCAAATGAAGAGTGAGCTAGGCG
GTCCATGGACGAGAGAGCTCTATAGCGGTTATTCCTCTGCACACGTTGCA
TTCCCGACACATATGTTTGATGTTGAGCACTTCTAGACACAAACAGTACT
ACATTAGGGCACATCCCAACATTTAACTGCTGTGTAACATTGTGTTGTTT
GCGCGAACCGTGCTGCAGTAGGGAGACACTTCCCTGACTCTCTTTACTCT
GTGGGGTGGGTTGCCACACACTGTTTAACCACACACCAAGCGCAACTCGC
GTAAGTAAATTGCGAAGAGAAGAGCAGCTACATGACGTACACCACATCTC
AATTCACGCTTAACCCCTCTGGGACTAGGCTCGTCACAGGCCGCAAGGCG
AACAGTCCAGAAAACGCGGCGGAACTATGCAAAAAAAACGGGTCCGCAGC
GCAGATACGCAGGTTCTCAGGCTCTCTGTTCTCTGCTCTGAAAAGAGACT
TCTGGTTGCAGAAGTCAACCCAGCAGCAAAACATGCACCGCGGCCGTGTC
GCCGCCCGGCAACACATTGGGGACGTCTGTTGGCACACTAGAAAGCTTCA
TCGGCCCTCAAAACGTCACTGCTAGTGTTCGCTCGAAGCTTTATTCTCCT
TTGTGGCGCTGTCCCGGGCTCTGAACTCTTCCGAAAGTACTCTAAATTCA
GTATATACTATATAGTCACAAAAAATGATCACTAAATTGGCACCGAAGTG
CCCTGCGGCAATAGTGTACTTCTGTACTTCTCGGGGGGCCGTCGGATAGA
GTCCCGCATCTGGCGCTCGGTTACTTTGCAATAATACCCAACGGCAACAG
CAGGAAGATCGATCTACACCGGTTGCTGGTGTATGTAGACGGAAATCGAA
GAGGTGTTTGGCGATGTACTGTTGTAGATATGTGCTTGTGCTGGTGGTGT
GGGTGCGTATGTGTGTCCTGGCATGCTGCGTCATGTGATGTGGGAAATGA
GAGCGAGAGAGCAAAACCGATTTCATAAATAACCAATAACCACCAACTCC
CAAATGCAACAGCTAAGCAGCAGCGGCGGCAGCAGCTGTAGCAAGCTGCC
GGAGACGAAACATAGCGTTACAACCCTGCCGCTGCTGTGCCACCACATCT
GGGTGGCCATACGACCATATCGGTTGTTCATGTTATCGTCCCGATGTGCC
GACTAGCCCAAGTCCGCACAAAACCGGGCGTCTCAATGGTCATTTTTTGG
AATCACCAAAACCCGCTTGAAGTCCCAGAGGGGTTAAATGGGTGATTCAG
TCAACCACTTTCGCGCGCCATATTTGTTTGTTCGTCACAACCAGGAGCCC
GATGCGCAGGAATGCTGCGGGAACGGGTGCGCTACGTGCGTCTGGATTGG
ATACTGGTGAGCCCCGAACCTGCTGTCCATGTTTTCGGCTAGCTGCCTCT
CCCCGGGGTCATGAATATCTCTGTTTTTGTGTTGGAGGTGCTGCATTACA
CAATACTTGTACGTCTGAGGCTGACTTTTCCAATGCACAGAGCGGCTCAA
GGTGCGGACGAAGTTTGTTTTCCAGCACCCACGCGGTTTCCTCGTTCGAG
GCAGTCGCACCTCGAAACCTACTGCTGTGGAGTAGTGGATGCGTCTGGGT
GCTCTCGTGTGTCCGGACGTTCGTATAAGAAGTATACACACGGGTGCCTC
TTTTGTCGTGGAACTACATGTCCGCCGTCTTGCTAGGGCGTTTAGCGGTA
GTCCAGACTATTATAGAAATCTGGCCTGGGCGGGGGCAAACTCGGTGTTG
GTTGCTACCTGGTATAAACTTGCGACGGATTGCAAGAATCGATGGCAGAT
GAACAAATGCATACAGCTAACTGCTCATGATGAAGTTTCTGTCGTAGTGC
CCAATAGAAATGGCGTATTCGGCCTCATGAACCGAGCTCTCTCACTCGCA
GTGATGCCAACATCACGGGAATATCGATTGCGGTAAAGAGTACAACCGAG
GAGGAACGCGTTGGAAAAAGCTTGTACCGGGGGGAAATTCCCGTGAGCGG
GTAGCATCTTATTTTTATTCGGCGTTGAGTTCCGTTGGAGGAGAAGCCAA
CTTTCGATTTTCTGGGAGGGCGATACTGTAGTCAAGTGGGAAATGGGAAT
GCGTAAAACTACCATCACCGGACAAAACGTTACTGCCACGGCCCGAAGAT
TCGGGGTTCGAGGTTTCACGTCTGCTCCCAAGGAAATAGTGTAGCATGGT
CCAACAGATTCACGTGTTTTCCCAACAGCCTCGGGCCAATATGTATTCAT
GTATGCTTGGCAGGGGAGCAACTCGCGGGATAACTTATTCCGATGACCTG
GGTTTTCACGAAACCCACTTGAACACGCCGCAGCACAAGGAACTGGAAGA
GATCGCGATTTTTGTGATTACCCTCGAGAAAATGTACGAAATGTAGTATT
GCAGTTCGCCTTCTTCCACGTAAATGCGCATGACAGATACGACCCCGAAA
CTCCGACTCTGCTCCTTCCGTTTTGTCTCTCGGCCTGAAAACTGCTCTCC
ACAGGGAAGAGCTGCAGGCGTGGGAAGAAGCAGAACGCGAACGCGAAGAG
GTGCCGCCATGACCATGCGCGTGGCAGTCATACATTGGGCCTGAAAATGT
CGCCCGGTGTTTTTGCCGTTTGGCGACGAGCTCTGCATGAATGTACTGGC
TGCAGCGCTCAAGGCTAACAAGAACTTTTTGTTTTCCCCCGTGTGGTATT
TGTCTTTGTAACCGGACCCTGGTTGGTTGGGACTTTTTTGCCGTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig483:12121..16116+

>mRNA_L-elsbetiae_contig483.12727.1 ID=mRNA_L-elsbetiae_contig483.12727.1|Name=mRNA_L-elsbetiae_contig483.12727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig483:12121..16116+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTTTACCGCTGTTCGATTGAGGCCGTGTATCACCTCTGAAGACGG
CTTCAGACGCGCAATTAGTTGTAGTAGAACAGGAAATATGGGTAGTTTTT
TTCTCGGAGGCGAACGGAACCTGTCAATAGGGGGCACGAGCACGAGGAAC
TACATCCCTTGGTCACCTTCTACGAGCGAGGGCAAGACATCATTGAACTC
ACCGTCGGCGACAGAAGGGGTGCAACATCACCCTCATCAGCAGCAACATC
AACAGCCACTTTCACCGTTGGTTAATCCCAAGCCCCCACGAAAGACGGCT
CAGGCCGTAGCAATGGAGGAGTTCGCTGCGTTGGAGCGGAAGTTCGCCCC
ACCGAGGAGAAAAACGCCGGAGGAAATCGCGATGGAAGAGTTTGCGGCTC
TGGAAAGAAAACTTGGCTCCGCCCCTGGCGTTGCCGAACCCCACCGGCAG
CAGAGGGGTTTGAGAAAGGCTCGCTCGTTGCCTTCAACGAAACCTGAGAT
GTCGTTTACCGCTGTTCGATTGAGGCCGTGTATCACCTCTGAAGACGGCT
TCAGACGCGCAATTAGTTGTAGTAGAACAGGAAATATGGGTAGTTTTTTT
CTCGGAGGCGAACGGAACCTGTCAATAGGGGGCACGAGCACGAGGAACTA
CATCCCTTGGTCACCTTCTACGAGCGAGGGCAAGACATCATTGAACTCAC
CGTCGGCGACAGAAGGGGTGCAACATCACCCTCATCAGCAGCAACATCAA
CAGCCACTTTCACCGTTGGTTAATCCCAAGCCCCCACGAAAGACGGCTCA
GGCCGTAGCAATGGAGGAGTTCGCTGCGTTGGAGCGGAAGTTCGCCCCAC
CGAGGAGAAAAACGCCGGAGGAAATCGCGATGGAAGAGTTTGCGGCTCTG
GAAAGAAAACTTGGCTCCGCCCCTGGCGTTGCCGAACCCCACCGGCAGCA
GAGGGGTTTGAGAAAGGCTCGCTCGTTGCCTTCAACGAAACCTGAGGAGC
CCGATGCGCAGGAATGCTGCGGGAACGGGTGCGCTACGTGCGTCTGGATT
GGATACTGGAGCCCGATGCGCAGGAATGCTGCGGGAACGGGTGCGCTACG
TGCGTCTGGATTGGATACTGGGAAGAGCTGCAGGCGTGGGAAGAAGCAGA
ACGCGAACGCGAAGAGGTGCCGCCATGAGGAAGAGCTGCAGGCGTGGGAA
GAAGCAGAACGCGAACGCGAAGAGGTGCCGCCATGA
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