mRNA_L-elsbetiae_contig4829.12723.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4829.12723.1
Unique NamemRNA_L-elsbetiae_contig4829.12723.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4829.12723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4829contigL-elsbetiae_contig4829:11050..12026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size226
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4829.12723.1prot_L-elsbetiae_contig4829.12723.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4829 11085..12026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816474.0041804-UTR-L-elsbetiae_contig4829:11049..110841622816474.0041804-UTR-L-elsbetiae_contig4829:11049..11084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4829 11050..11084 +
1691683585.8992796-UTR-L-elsbetiae_contig4829:11049..110841691683585.8992796-UTR-L-elsbetiae_contig4829:11049..11084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4829 11050..11084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816474.018424-CDS-L-elsbetiae_contig4829:11084..111701622816474.018424-CDS-L-elsbetiae_contig4829:11084..11170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4829 11085..11170 +
1691683585.9088311-CDS-L-elsbetiae_contig4829:11084..111701691683585.9088311-CDS-L-elsbetiae_contig4829:11084..11170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4829 11085..11170 +
1622816474.0306773-CDS-L-elsbetiae_contig4829:11923..120261622816474.0306773-CDS-L-elsbetiae_contig4829:11923..12026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4829 11924..12026 +
1691683585.9191542-CDS-L-elsbetiae_contig4829:11923..120261691683585.9191542-CDS-L-elsbetiae_contig4829:11923..12026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4829 11924..12026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4829.12723.1

>prot_L-elsbetiae_contig4829.12723.1 ID=prot_L-elsbetiae_contig4829.12723.1|Name=mRNA_L-elsbetiae_contig4829.12723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
MSTFDPSEFEGWDSVPPAIQDVIRSEHDSILLSNPDLTMVSMQEVVQASH
DRLGVKQKERESE
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mRNA from alignment at L-elsbetiae_contig4829:11050..12026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4829.12723.1 ID=mRNA_L-elsbetiae_contig4829.12723.1|Name=mRNA_L-elsbetiae_contig4829.12723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=977bp|location=Sequence derived from alignment at L-elsbetiae_contig4829:11050..12026+ (Laminarionema elsbetiae ELsaHSoW15)
TCGAGGTATCGTGGGTGAAGTGCTAGAGGAACGAGATGTCTACATTCGAC
CCTTCGGAGTTCGAGGGTTGGGACAGCGTACCCCCAGCCATACAGGACGT
GATCCGGAGTGAACATGACAGGTGCGAAGCAGCAGAAGCAGAGTTGTTGC
TCATGAAACAAGAAAAGACACAAGAGCAGCTAGAGGCGGCCGACAGAGAG
CGGACCGCAGAGAAGAAAGAGAAAAAGACGTTCGAGGAAAGAGACACCGC
ATCATCGACCTACCCGCTGCATGACAGACCGGAGGAGAGAGCGGCACCCG
ACGGTCCAGAGGACTTAGCTCATTTAATGAGCAGGGCCCTTATCAGTGCC
AATTCAGGCATGCTAGCAGCAGAGTCCATAAGTGTGTGGGACGGTAAAGT
AAGTAGCGGAGAAGATGTCCAAACGAAAGTAAGTGCGTATATCAGTGTTG
TTCTTGCATTGTGTGCGCAAAATGATACATTAGAAGTCGGTTTATTTGAT
GGAGAGAGTAGGGAGGAGTTGATGAAGCGGTTTTCTGAAGACACAGTAAG
GAAATCGACTCAACTGTGGGGTTTGCTTGTGAGTAAGATTGTCTATGCTC
CCATCGCTCAGCAAATGCTCACTGCAGGTAGTCCCCAAGAAGCCTGGCAG
TCTTTCTGCAAATACTACGCAGTGCGCGCTGCGTCAGACAAACTGAAATG
GAGGAGTGATTGGTCGAGTCTCCAACAGGGAGAGGATGAACCCCCCAGAG
ATTATTTTGGTAGGGCGACTGTGATCCACTCCAAGTTGAACTCTTATGGA
GCAAGTATCGGTGACGTTGAAGCTAACCACCACATCGCCACCCACCTTTC
TTCTCGTTTTTCCGTCGAGAGCAGCATTTTGCTCTCGAATCCTGATTTGA
CAATGGTATCTATGCAGGAGGTGGTGCAAGCGTCTCACGACCGCCTGGGC
GTGAAGCAGAAGGAGAGGGAGAGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4829:11050..12026+

>mRNA_L-elsbetiae_contig4829.12723.1 ID=mRNA_L-elsbetiae_contig4829.12723.1|Name=mRNA_L-elsbetiae_contig4829.12723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig4829:11050..12026+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTACATTCGACCCTTCGGAGTTCGAGGGTTGGGACAGCGTACCCCC
AGCCATACAGGACGTGATCCGGAGTGAACATGACAGATGTCTACATTCGA
CCCTTCGGAGTTCGAGGGTTGGGACAGCGTACCCCCAGCCATACAGGACG
TGATCCGGAGTGAACATGACAGCATTTTGCTCTCGAATCCTGATTTGACA
ATGGTATCTATGCAGGAGGTGGTGCAAGCGTCTCACGACCGCCTGGGCGT
GAAGCAGAAGGAGAGGGAGAGCGAGCATTTTGCTCTCGAATCCTGATTTG
ACAATGGTATCTATGCAGGAGGTGGTGCAAGCGTCTCACGACCGCCTGGG
CGTGAAGCAGAAGGAGAGGGAGAGCGAG
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