mRNA_L-elsbetiae_contig4827.12719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4827.12719.1
Unique NamemRNA_L-elsbetiae_contig4827.12719.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4827.12719.1 vs. uniprot
Match: D7G086_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G086_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.070e-44
Identity = 132/262 (50.38%), Postives = 146/262 (55.73%), Query Frame = 1 
Query:    1 LDLGVLRLCPRTLSSPVGPVRIDTATGRAL-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPDVLAEAGAAFQVGAATPMMAGVFSILKGCVGVEEQAIARALHFL-RGGRANLGAASGGGRDGDGFSAGLE---EEERQEWQAHREASMAVLVQRAMSAAPPGRIGGEVRAAAEMGR-----------------GGGRSGSGGKRSTSAYRSRRLQTALAAVGCMATWSEIYKELSAADAQGG-LLADEKFLPALLRAHRR 717
            LDLGVLRLCP+T SS VG  RID +T RA                               S DVLAEAGAAFQVGAATP+MAGVFSILKGC GVEEQAIA A+HFL RGG  N                      EEE +EWQAHREASMA+LV RAM+++                                  GG R     + STSAYR+RRLQTALAAVGCM TW EI+KELSAAD+ GG LLADE FL  LLR +RR
Sbjct:  612 LDLGVLRLCPQTRSSSVGAGRIDRSTVRAGGTASILSSLSLSLPGSSLDASHSRPGRGSTSADVLAEAGAAFQVGAATPLMAGVFSILKGCQGVEEQAIAGAIHFLSRGGNENAAXXXXXXXXXXXXXXXXXXXFEEESEEWQAHREASMAMLVHRAMTSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSR-----RSSTSAYRTRRLQTALAAVGCMTTWMEIFKELSAADSPGGMLLADETFLHELLRTYRR 868
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BLAST of mRNA_L-elsbetiae_contig4827.12719.1 vs. uniprot
Match: A0A6H5JKL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL7_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.070e-28
Identity = 114/262 (43.51%), Postives = 125/262 (47.71%), Query Frame = 1 
Query:    1 LDLGVLRLCPRTLSSPVGPVRIDTATGRAL-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPDVLAEAGAAFQVGAATPMMAGVFSILKGCVGVEEQAIARALHFL-RGGRANLGAASGGGRDGDGFSAGLEEEERQEWQAHREASMAVLVQRAMSAAPPGRIGGEVRAAAEMGR-------------------GGGRSGSGGKRSTSAYRSRRLQTALAAVGCMATWSEIYKELSAADAQGG-LLADEKFLPALLRAHRRA 720
            LDLGVLRLCP+T SS VG  RID +T RA                               SPDVLAEAGAAFQVGAATP+MAGVFSILKGC G EEQAIA A+HFL RGG                                                                                    GGG   S    STSAYR+RRLQTALAAVGCMATW EI+KELSAAD++GG LLADE F+  L+RA+RRA
Sbjct:  616 LDLGVLRLCPQTRSSSVGAGRIDRSTVRAGGTSSILSSLALSLPVSSLDASHSHPRTGSTSPDVLAEAGAAFQVGAATPLMAGVFSILKGCQGAEEQAIACAIHFLSRGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGSRIS----STSAYRTRRLQTALAAVGCMATWMEIFKELSAADSRGGMLLADETFVHELMRAYRRA 873
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4827.12719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G086_ECTSI4.070e-4450.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKL7_9PHAE1.070e-2843.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4827contigL-elsbetiae_contig4827:5353..7794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1089
Cds size1086
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4827.12719.1prot_L-elsbetiae_contig4827.12719.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4827 5355..7794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816473.7709875-CDS-L-elsbetiae_contig4827:5354..57801622816473.7709875-CDS-L-elsbetiae_contig4827:5354..5780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 5355..5780 -
1691683585.738021-CDS-L-elsbetiae_contig4827:5354..57801691683585.738021-CDS-L-elsbetiae_contig4827:5354..5780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 5355..5780 -
1622816473.782143-CDS-L-elsbetiae_contig4827:6064..61391622816473.782143-CDS-L-elsbetiae_contig4827:6064..6139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 6065..6139 -
1691683585.754995-CDS-L-elsbetiae_contig4827:6064..61391691683585.754995-CDS-L-elsbetiae_contig4827:6064..6139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 6065..6139 -
1622816473.7922933-CDS-L-elsbetiae_contig4827:6824..71931622816473.7922933-CDS-L-elsbetiae_contig4827:6824..7193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 6825..7193 -
1691683585.7685745-CDS-L-elsbetiae_contig4827:6824..71931691683585.7685745-CDS-L-elsbetiae_contig4827:6824..7193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 6825..7193 -
1622816473.8066738-CDS-L-elsbetiae_contig4827:7578..77941622816473.8066738-CDS-L-elsbetiae_contig4827:7578..7794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 7579..7794 -
1691683585.7770236-CDS-L-elsbetiae_contig4827:7578..77941691683585.7770236-CDS-L-elsbetiae_contig4827:7578..7794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 7579..7794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4827.12719.1

>prot_L-elsbetiae_contig4827.12719.1 ID=prot_L-elsbetiae_contig4827.12719.1|Name=mRNA_L-elsbetiae_contig4827.12719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=362bp
LDLGVLRLCPRTLSSPVGPVRIDTATGRALPLPLSLSLSLSLSAPPPQKG
TRNSTSTSTSPDVLAEAGAAFQVGAATPMMAGVFSILKGCVGVEEQAIAR
ALHFLRGGRANLGAASGGGRDGDGFSAGLEEEERQEWQAHREASMAVLVQ
RAMSAAPPGRIGGEVRAAAEMGRGGGRSGSGGKRSTSAYRSRRLQTALAA
VGCMATWSEIYKELSAADAQGGLLADEKFLPALLRAHRRAPAATTTATSA
AALGGEGSDRSRGRVEERLQEEEAQGITADSGGGDARDETSVSPAAPVGS
GKVTGLEHPAYSARVKKETSADLGDDGCSGVENDAAEEGGVATESLPVVR
RGSGSSDGGGNG
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mRNA from alignment at L-elsbetiae_contig4827:5353..7794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4827.12719.1 ID=mRNA_L-elsbetiae_contig4827.12719.1|Name=mRNA_L-elsbetiae_contig4827.12719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2442bp|location=Sequence derived from alignment at L-elsbetiae_contig4827:5353..7794- (Laminarionema elsbetiae ELsaHSoW15)
CTCGACCTCGGCGTCCTCCGGCTCTGTCCCCGCACGCTCTCGAGCCCGGT
TGGTCCCGTCCGGATAGACACGGCCACGGGGCGAGCGCTGCCGCTGCCGT
TGTCGCTGTCGCTGTCGCTGTCGCTCTCAGCGCCACCTCCTCAGAAGGGG
ACTCGGAACTCGACATCGACGTCGACATCTCCGGACGTGCTAGCGGAGGC
AGGCGCGGCGTTCCAGGTATGTATGTTTCTCTCCTGTTGCTGGATCTGGA
TCTTTTCAATGGATCTTTTCAAGGGACACTTTCAGGCCCATCGACCCAGT
GGAGCAAACACTACATAAACGGCCTGCGCGTGTGCAATCGCTGCTTGCTT
GCGCTTAAACTTGCAGTTGTCCGAGTTTACGGTCTGTGGTGAACCTAGTC
CGCGTGCTTGTTTCCGACAGACGGCAAGTAGAGATGTAAAACCGACGGAA
AATATCGGAGATGGGTGGACCTCCCTTTTCTCACTTGAGATCATCAGCCC
TCACGGTTTCACGTCGAGAAACGCGTCATCCGGAGCGGACGAAAACCGTG
CCTGCCTGTCCGCCGGTTGTTCTTGCTGTGCTGTGCTGTGCTGTGCTCCA
GGTGGGGGCCGCGACTCCGATGATGGCGGGTGTGTTTTCCATCCTGAAGG
GGTGTGTCGGCGTCGAGGAGCAGGCCATCGCGCGCGCCTTGCACTTCTTG
CGCGGCGGGCGCGCCAACCTTGGAGCTGCTAGTGGAGGAGGCAGGGACGG
GGACGGCTTTTCGGCGGGGCTCGAGGAGGAGGAGCGGCAGGAGTGGCAGG
CGCACCGAGAAGCCTCCATGGCGGTGCTGGTGCAGAGGGCCATGTCGGCA
GCGCCGCCGGGACGGATCGGAGGGGAGGTTCGTGCAGCCGCGGAGATGGG
AAGGGGCGGAGGGAGGAGCGGGAGCGGCGGCAAGAGATCGACGTCGGCGT
ATCGCTCGAGGAGGTTGCAGGTGCGGAGCGCACAGGCGCCGCACGCGGCT
CTGCTGCGGGGGCTGAGGCGTGCAGGCTGTTTGTCCGGCGTTGTTGGGCG
CTTCTTTCGGCGCGGCCGACTTGAGCTGCTTGCTGCCGGGTAGCCTTGCT
TTCTCCTCTTGAGTCTTGCAGCGTGTTGCGTCGGTTACGGGGAACTCCGG
CGCGTGCTTTGCGGCATCGTGCCTTTCCCTCCCTGGCTGTCCTCGCTTTC
GATTGCTCCCTTGGTGTCCCCTCGTTGCTAATGGCCTACGTACCTCAACA
TGTTTTTGGGTGGCAAGCGATTACCGCCACCGACAGCCCAGTGACTGTGA
CCCTGTGCAATCTTGACGTCTTTTTTATCCTGATGCATGGTGTTGTTCCT
GTATGTATGTATCCGTATGTTTTTGGTCGCCCCTCCCCTCCCCTTTGGTA
TGATGCTCACTACCTTTTGCGTCTTTTTAGAAAAAAGCGTGCTGTTCAAT
GTCCGATCCTTGTATGCAGCAAGCAGCGTGTGGTTACACCTCTTGAGCCC
CAGAGAGAGTCGCCACACAAAGATCCGAATATACAAGTATAGTTTACCTC
TCGTACAGCCCCCCGATACGTCCTATCATCCATACATACGGTGAGCGAAA
CTGACCCTTTTCGCTGCATTGCTGCGTTTGGGCGTGTCGCGTTCGCTCCG
GGCAGACTGCATTGGCAGCCGTGGGGTGCATGGCGACGTGGAGCGAGATC
TACAAGGAGCTTAGCGCCGCCGACGCGCAGGCGAGTTTTTCTTGGAGCTT
CATTTCGCGTGTGAACTTGAAGAAAAATCACCTCTGCTTTTTACTGGTCT
CGCTAAAGCTATTATAGTGGCATGCGAGCGCAGTGTAGACACCTTGTCGT
GCGAGTCCATCTAATCTGATGCACCGGGGTACCTTGATCGGCGGCATCTC
ATCGATCAATCCGGCTTCCGTGACCCTACCTCGTCCTTTAACATCATCCT
TGCTGGTTGCTTTCTCTCTCCCCGCGCACACCCGTGTCACGTCGACAATC
CCGATCGCCCACAGGGGGGGTTGTTGGCAGATGAGAAATTCCTGCCTGCG
TTGCTGCGTGCCCACCGACGTGCACCAGCGGCGACTACCACCGCCACCAG
CGCGGCAGCACTAGGCGGAGAAGGCAGCGACCGGTCGAGAGGCCGTGTAG
AAGAACGGCTTCAAGAGGAAGAGGCTCAAGGGATTACCGCCGACAGCGGT
GGTGGTGACGCCAGGGATGAGACGAGTGTGTCGCCGGCTGCGCCGGTTGG
GAGCGGAAAAGTCACGGGATTGGAGCATCCTGCTTATTCCGCCCGAGTCA
AAAAGGAGACGAGTGCTGATCTTGGCGACGACGGGTGCAGCGGGGTTGAA
AATGATGCTGCAGAAGAAGGGGGAGTCGCCACGGAGAGCTTGCCTGTTGT
TCGACGAGGTAGCGGCAGCAGCGACGGCGGCGGCAACGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4827:5353..7794-

>mRNA_L-elsbetiae_contig4827.12719.1 ID=mRNA_L-elsbetiae_contig4827.12719.1|Name=mRNA_L-elsbetiae_contig4827.12719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2172bp|location=Sequence derived from alignment at L-elsbetiae_contig4827:5353..7794- (Laminarionema elsbetiae ELsaHSoW15)
CTCGACCTCGGCGTCCTCCGGCTCTGTCCCCGCACGCTCTCGAGCCCGGT
TGGTCCCGTCCGGATAGACACGGCCACGGGGCGAGCGCTGCCGCTGCCGT
TGTCGCTGTCGCTGTCGCTGTCGCTCTCAGCGCCACCTCCTCAGAAGGGG
ACTCGGAACTCGACATCGACGTCGACATCTCCGGACGTGCTAGCGGAGGC
AGGCGCGGCGTTCCAGCTCGACCTCGGCGTCCTCCGGCTCTGTCCCCGCA
CGCTCTCGAGCCCGGTTGGTCCCGTCCGGATAGACACGGCCACGGGGCGA
GCGCTGCCGCTGCCGTTGTCGCTGTCGCTGTCGCTGTCGCTCTCAGCGCC
ACCTCCTCAGAAGGGGACTCGGAACTCGACATCGACGTCGACATCTCCGG
ACGTGCTAGCGGAGGCAGGCGCGGCGTTCCAGGTGGGGGCCGCGACTCCG
ATGATGGCGGGTGTGTTTTCCATCCTGAAGGGGTGTGTCGGCGTCGAGGA
GCAGGCCATCGCGCGCGCCTTGCACTTCTTGCGCGGCGGGCGCGCCAACC
TTGGAGCTGCTAGTGGAGGAGGCAGGGACGGGGACGGCTTTTCGGCGGGG
CTCGAGGAGGAGGAGCGGCAGGAGTGGCAGGCGCACCGAGAAGCCTCCAT
GGCGGTGCTGGTGCAGAGGGCCATGTCGGCAGCGCCGCCGGGACGGATCG
GAGGGGAGGTTCGTGCAGCCGCGGAGATGGGAAGGGGCGGAGGGAGGAGC
GGGAGCGGCGGCAAGAGATCGACGTCGGCGTATCGCTCGAGGAGGTTGCA
GGTGGGGGCCGCGACTCCGATGATGGCGGGTGTGTTTTCCATCCTGAAGG
GGTGTGTCGGCGTCGAGGAGCAGGCCATCGCGCGCGCCTTGCACTTCTTG
CGCGGCGGGCGCGCCAACCTTGGAGCTGCTAGTGGAGGAGGCAGGGACGG
GGACGGCTTTTCGGCGGGGCTCGAGGAGGAGGAGCGGCAGGAGTGGCAGG
CGCACCGAGAAGCCTCCATGGCGGTGCTGGTGCAGAGGGCCATGTCGGCA
GCGCCGCCGGGACGGATCGGAGGGGAGGTTCGTGCAGCCGCGGAGATGGG
AAGGGGCGGAGGGAGGAGCGGGAGCGGCGGCAAGAGATCGACGTCGGCGT
ATCGCTCGAGGAGGTTGCAGACTGCATTGGCAGCCGTGGGGTGCATGGCG
ACGTGGAGCGAGATCTACAAGGAGCTTAGCGCCGCCGACGCGCAGACTGC
ATTGGCAGCCGTGGGGTGCATGGCGACGTGGAGCGAGATCTACAAGGAGC
TTAGCGCCGCCGACGCGCAGGGGGGGTTGTTGGCAGATGAGAAATTCCTG
CCTGCGTTGCTGCGTGCCCACCGACGTGCACCAGCGGCGACTACCACCGC
CACCAGCGCGGCAGCACTAGGCGGAGAAGGCAGCGACCGGTCGAGAGGCC
GTGTAGAAGAACGGCTTCAAGAGGAAGAGGCTCAAGGGATTACCGCCGAC
AGCGGTGGTGGTGACGCCAGGGATGAGACGAGTGTGTCGCCGGCTGCGCC
GGTTGGGAGCGGAAAAGTCACGGGATTGGAGCATCCTGCTTATTCCGCCC
GAGTCAAAAAGGAGACGAGTGCTGATCTTGGCGACGACGGGTGCAGCGGG
GTTGAAAATGATGCTGCAGAAGAAGGGGGAGTCGCCACGGAGAGCTTGCC
TGTTGTTCGACGAGGTAGCGGCAGCAGCGACGGCGGCGGCAACGGTGGGG
GGTTGTTGGCAGATGAGAAATTCCTGCCTGCGTTGCTGCGTGCCCACCGA
CGTGCACCAGCGGCGACTACCACCGCCACCAGCGCGGCAGCACTAGGCGG
AGAAGGCAGCGACCGGTCGAGAGGCCGTGTAGAAGAACGGCTTCAAGAGG
AAGAGGCTCAAGGGATTACCGCCGACAGCGGTGGTGGTGACGCCAGGGAT
GAGACGAGTGTGTCGCCGGCTGCGCCGGTTGGGAGCGGAAAAGTCACGGG
ATTGGAGCATCCTGCTTATTCCGCCCGAGTCAAAAAGGAGACGAGTGCTG
ATCTTGGCGACGACGGGTGCAGCGGGGTTGAAAATGATGCTGCAGAAGAA
GGGGGAGTCGCCACGGAGAGCTTGCCTGTTGTTCGACGAGGTAGCGGCAG
CAGCGACGGCGGCGGCAACGGT
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