mRNA_L-elsbetiae_contig4827.12718.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4827.12718.1
Unique NamemRNA_L-elsbetiae_contig4827.12718.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4827.12718.1 vs. uniprot
Match: D7G088_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G088_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 2.530e-76
Identity = 133/184 (72.28%), Postives = 145/184 (78.80%), Query Frame = 2 
Query:   11 ESDKPQLANFSGMWRRTHGFHWASLLLFSGVDKAAVADQAARMQSSSVVHLIDHDATSFRLVVHSDSGHTQDQHFFIGGQPRPSPXXXXXXXXXXXXXXXTAKPTVTLSHMRWEKNGQALVLSSIDAATGDEMKVSRHLASQGTVIVQHYTARRAKTGETAEAISIFRKMVRGGDRSGSE*GIS 562
            E  + Q ANF GMWRR+HGFHW SLL FSGVDKA VA+QAARMQSSSVVHLIDHDA SFRLVVHSDSG+TQDQHFFIGGQPRPSP                A  T TLS+MRW KNGQ LVL+S+DAATGDEM VSRHLA+QG+VIVQHY ARRAKTGETAEA++IFR+MVR    S SE  IS
Sbjct:  110 EPHEQQHANFCGMWRRSHGFHWESLLEFSGVDKADVAEQAARMQSSSVVHLIDHDANSFRLVVHSDSGNTQDQHFFIGGQPRPSPT--------------NAPSTATLSNMRWTKNGQGLVLTSVDAATGDEMTVSRHLAAQGSVIVQHYAARRAKTGETAEAVTIFRRMVRATSSSTSEPPIS 279
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4827.12718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G088_ECTSI2.530e-7672.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4827contigL-elsbetiae_contig4827:4..2880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000330.1
Exons2
Model size1714
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4827.12718.1prot_L-elsbetiae_contig4827.12718.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4827 50..1719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816473.6964417-UTR-L-elsbetiae_contig4827:3..491622816473.6964417-UTR-L-elsbetiae_contig4827:3..49Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4827 4..49 +
1691683585.6913455-UTR-L-elsbetiae_contig4827:3..491691683585.6913455-UTR-L-elsbetiae_contig4827:3..49Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4827 4..49 +
1622816473.7313101-UTR-L-elsbetiae_contig4827:1719..28801622816473.7313101-UTR-L-elsbetiae_contig4827:1719..2880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4827 1720..2880 +
1691683585.7293568-UTR-L-elsbetiae_contig4827:1719..28801691683585.7293568-UTR-L-elsbetiae_contig4827:1719..2880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4827 1720..2880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816473.7093985-CDS-L-elsbetiae_contig4827:49..1301622816473.7093985-CDS-L-elsbetiae_contig4827:49..130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 50..130 +
1691683585.7058096-CDS-L-elsbetiae_contig4827:49..1301691683585.7058096-CDS-L-elsbetiae_contig4827:49..130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 50..130 +
1622816473.7200067-CDS-L-elsbetiae_contig4827:1293..17191622816473.7200067-CDS-L-elsbetiae_contig4827:1293..1719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 1294..1719 +
1691683585.718916-CDS-L-elsbetiae_contig4827:1293..17191691683585.718916-CDS-L-elsbetiae_contig4827:1293..1719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4827 1294..1719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4827.12718.1

>prot_L-elsbetiae_contig4827.12718.1 ID=prot_L-elsbetiae_contig4827.12718.1|Name=mRNA_L-elsbetiae_contig4827.12718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MWRRTHGFHWASLLLFSGVDKAAVADQAARMQSSSVVHLIDHDATSFRLV
VHSDSGHTQDQHFFIGGQPRPSPTTPTTNNTSSSSPTPTAKPTVTLSHMR
WEKNGQALVLSSIDAATGDEMKVSRHLASQGTVIVQHYTARRAKTGETAE
AISIFRKMVRGGDRSGSE*
back to top

mRNA from alignment at L-elsbetiae_contig4827:4..2880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4827.12718.1 ID=mRNA_L-elsbetiae_contig4827.12718.1|Name=mRNA_L-elsbetiae_contig4827.12718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2877bp|location=Sequence derived from alignment at L-elsbetiae_contig4827:4..2880+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTGACGAAAGTGACAAGCCTCAACTCGCGAATTTCTCCGGCATGT
GGAGACGGACTCACGGGTTCCACTGGGCATCCCTCCTTCTTTTTTCGGGC
GTGGACAAGGCTGCTGTCGCCGATCAGGTACAGACGTAGATACGTGCTAA
CGTTCATCGGCTGCGGCTGCGTATCTTACGAGATACCGCCGTTTCCTGTT
TTTCTACTAATTTTCTAGTTTTCTCATATCGCTGCAGATGCCACAGTCAG
AGTCTATCTAGATTGTTTGCTCTCTTCAACCAAGGCACCCACCGGTACAT
GCATACGTATGTCGGGCAGGCGACGTTCCATGGACTTGCCCTGCTGTTCG
AGTGTCCCTGATCGCTTGCCGTAGTTTCCCGGCGTGTATTTAGAGAGGCA
GAGGAGGGAGAGAGATCTTTTTTTCATTTAGTTTTGTCGGGTGCTGGGCG
ACGCGGGGTATGACGGGAGAACGATCTCCATTTCTCCGGGCCCATTTCTC
CACCACTCACTCCGTCTCGCGGCCATCTGGCATCTGTGACGCACACACGT
GTGTGCATCATACTCCATAGGACGGGGCGTCCACACATGCACCCAATGTA
TATATGGACGGATGTATCTGCGTTTTAGAGAAGTCTAGCTAGCTAGCACA
CGTATCAGCAGTGGTAACCGCGGTGCGTGCGTGTGACTGAGCGGCGGTCC
GTGAACCATCCCAAATTTGAATTTCCAAATCGAGGAAATGGTCCAACGGA
CACCGCTGTACGCCCACACGTGTTGATAGTAGCCAGGATAGCTCCCAAAT
TGATGGGATCTATAGTCTCCTGGAGTAACCTCTGGTACTTGTGGTTGGTG
GCGTGTGGGTGTGCTTTGAAAAATAAGCAGATAATCAAAAAAATTCTCTG
CTGCGACACGCCTTCATCACACAGATATCTGCCTCTTCGCCCGAAAAGTG
AATTTGTAGTCCAAGTAAGTCTACATACATATATCTATGTACCTACAAAA
GTTGAAGTGTTTATTTTCACTGATTCAAAAGGCGCGGATGTAACGGAGTC
TCAGTAATAGAAGGACATACATTCACAGTAGCAACAATCCTGACCACCAC
CACCACGACTACGATGCCATACACAGACAGCCACTTTTTTCCCGCTGCCG
CGTGGCAAACGAGGCCAGCTTGGACCTCCACGTGTGTCTTTTACGTACAT
GATGTGCATCTGACATTTCATCAACCCCGCCGCGCATCTCTCCATCCCCC
CCCATCCTATCTGTATTTTGTTTTCTTCTACAACACGCAGGCGGCCAGGA
TGCAGTCCTCCTCTGTGGTGCACCTCATAGACCACGACGCAACCAGCTTC
CGCCTGGTCGTCCACAGCGACTCCGGACACACCCAGGACCAACACTTCTT
CATCGGGGGCCAGCCCAGACCAAGCCCGACGACCCCCACCACCAACAACA
CCTCGTCCTCTTCGCCGACACCGACGGCGAAACCGACGGTGACGCTCTCC
CACATGCGCTGGGAGAAGAACGGGCAGGCGTTGGTGTTGAGCAGCATCGA
CGCGGCCACGGGGGACGAAATGAAGGTCTCGAGGCACCTGGCGTCCCAGG
GCACGGTTATTGTGCAGCACTACACCGCGCGTCGGGCCAAAACGGGCGAA
ACCGCCGAGGCAATATCGATATTCCGGAAGATGGTGCGCGGCGGCGACCG
CAGTGGGTCGGAATGAGGAATATCCTTATCCTTCGCCATCGCACCTTATA
GATAACGGGGATATAGCTCTTGTTTGATTTTCTGAGGTCTCAAGAGAAAG
TGATGCGCTCGTTAGGCTGTACTTCTCGTCTTGGAACGAGTGTAACAACG
TTTATTGTATGTACAACGTAGGAAAATAATAGGGAGCTAGCAGTTGTTGT
GTTGATGTATAATGGAGGGAAGCGTGTTTCACGCGCCGTGTGCTTGGACT
TGAGGTGGTGGGAGAGGCGAATCAGGCAAATTGTTTTGTTTTGAGGACGT
TACTTGTAGCGTTGTTGTGGGGCGATATGAAATCTTCCCAGGCGTGTGTC
TCCCATTGAGGTATGGTGAGCTCTCGCGCAAAGGCGCTTGTTTGTATGTA
TGTAGTAGCGGACATCCCCCTTGCGGTTGCTCCCATGTCAGGGTGTTGTG
TGTAATTTACCGTCAGCCTTGACGACTTGAGCAGGGTGCACCACATCTTG
CGCGTATGGACGTAGTATCAGCTTTGTTGGGGTCACACGGTATTGTGTGT
ACTGGAGGGACCGATGGCATTTTTTTTGTCGCTCGCACGAGCTGTTGATT
GGTTGAATGCATGGCAGCGTGTCTTGCAGATTTTGGTACATTTCATCCCT
TGGGATATGCAGGCCGGCCCGGCGTCGATGTGTCATGTCACCTGCAATGC
AGGCGAAACATCGATGCCGGTGATTGTGTTGTTTGTGTGCGCTGTTTTCT
AGCTACGAACGAATCGCGAACGCACGTTGATGTGCTTGATCGAGTGATAA
TACATAGTCTACGCAAGCACCACCGTGTTTTTATATTGTTTTTTTAGTCT
CTGTCAGTCAGTCCTTCGACTGCTGCACTCCACCGGCGTTACGTTGCGCT
GCTCGATGTACTTGTTGGTGTCATTCAAAAGCGCGTGCGCATGTTTGTGG
TGATGGTGTGCGAGCACGCGCAACTGCGTCCTGCCCCAGTACTTGAAGCA
CAAACAAGCATGATTTCGGTTGAACATGTATTGTGTCTCGGTCTTGTCTG
TGATCGAGGCTATTTAGCCATGAGACAGAATATATATACCTTCATGTCCC
TGTCTAAGCATGGTCAGGTGTCAAGTGTAATACTTAAGTGCGGACGAACG
GGTCAAATGTGAAACTTAAACACAACC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4827:4..2880+

>mRNA_L-elsbetiae_contig4827.12718.1 ID=mRNA_L-elsbetiae_contig4827.12718.1|Name=mRNA_L-elsbetiae_contig4827.12718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig4827:4..2880+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGAGACGGACTCACGGGTTCCACTGGGCATCCCTCCTTCTTTTTTC
GGGCGTGGACAAGGCTGCTGTCGCCGATCAGATGTGGAGACGGACTCACG
GGTTCCACTGGGCATCCCTCCTTCTTTTTTCGGGCGTGGACAAGGCTGCT
GTCGCCGATCAGGCGGCCAGGATGCAGTCCTCCTCTGTGGTGCACCTCAT
AGACCACGACGCAACCAGCTTCCGCCTGGTCGTCCACAGCGACTCCGGAC
ACACCCAGGACCAACACTTCTTCATCGGGGGCCAGCCCAGACCAAGCCCG
ACGACCCCCACCACCAACAACACCTCGTCCTCTTCGCCGACACCGACGGC
GAAACCGACGGTGACGCTCTCCCACATGCGCTGGGAGAAGAACGGGCAGG
CGTTGGTGTTGAGCAGCATCGACGCGGCCACGGGGGACGAAATGAAGGTC
TCGAGGCACCTGGCGTCCCAGGGCACGGTTATTGTGCAGCACTACACCGC
GCGTCGGGCCAAAACGGGCGAAACCGCCGAGGCAATATCGATATTCCGGA
AGATGGTGCGCGGCGGCGACCGCAGTGGGTCGGAATGAGCGGCCAGGATG
CAGTCCTCCTCTGTGGTGCACCTCATAGACCACGACGCAACCAGCTTCCG
CCTGGTCGTCCACAGCGACTCCGGACACACCCAGGACCAACACTTCTTCA
TCGGGGGCCAGCCCAGACCAAGCCCGACGACCCCCACCACCAACAACACC
TCGTCCTCTTCGCCGACACCGACGGCGAAACCGACGGTGACGCTCTCCCA
CATGCGCTGGGAGAAGAACGGGCAGGCGTTGGTGTTGAGCAGCATCGACG
CGGCCACGGGGGACGAAATGAAGGTCTCGAGGCACCTGGCGTCCCAGGGC
ACGGTTATTGTGCAGCACTACACCGCGCGTCGGGCCAAAACGGGCGAAAC
CGCCGAGGCAATATCGATATTCCGGAAGATGGTGCGCGGCGGCGACCGCA
GTGGGTCGGAATGA
back to top