mRNA_L-elsbetiae_contig4824.12714.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4824.12714.1
Unique NamemRNA_L-elsbetiae_contig4824.12714.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4824.12714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4824contigL-elsbetiae_contig4824:2573..3502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size395
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816473.3527715-CDS-L-elsbetiae_contig4824:2572..26301622816473.3527715-CDS-L-elsbetiae_contig4824:2572..2630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 2573..2630 +
1691683585.4424481-CDS-L-elsbetiae_contig4824:2572..26301691683585.4424481-CDS-L-elsbetiae_contig4824:2572..2630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 2573..2630 +
1622816473.3633199-CDS-L-elsbetiae_contig4824:3165..35001622816473.3633199-CDS-L-elsbetiae_contig4824:3165..3500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 3166..3500 +
1691683585.452631-CDS-L-elsbetiae_contig4824:3165..35001691683585.452631-CDS-L-elsbetiae_contig4824:3165..3500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 3166..3500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4824.12714.1prot_L-elsbetiae_contig4824.12714.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4824 2573..3500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4824.12714.1

>prot_L-elsbetiae_contig4824.12714.1 ID=prot_L-elsbetiae_contig4824.12714.1|Name=mRNA_L-elsbetiae_contig4824.12714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
EEERLPRGGCKDKGGGAPRGSATEPPTGASGAPSIALPPRARIPPARGRP
ARALRESFLPRSPPGIPTPPLPRGRAWLLRSICWALLPRPRRRRAVSRPP
TAAGRGRRPLGLKGVRRRRSSSSSSSSNTTT
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mRNA from alignment at L-elsbetiae_contig4824:2573..3502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4824.12714.1 ID=mRNA_L-elsbetiae_contig4824.12714.1|Name=mRNA_L-elsbetiae_contig4824.12714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig4824:2573..3502+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAAGAACGTCTCCCGCGGGGGGGGTGCAAGGACAAGGGGGGGGGAGC
TCCCCGAGGTGAATTGAACAAACGAGCAAACGAGCGAACGAGGCCGGACT
TGTGTCATGCGGTATATACATTTGTCGACCGACTGCCGTATCGGACAAAT
ACTTTATATTTTGGTGTTCTGCGGCGGGGGGGTGGGGGGGGGGGGTATAT
TCTGCGGCAAGCAGGCAAGACGCCCGAACGGGCCCCCCCCCCCCCCCCCC
ACCCCCCCCCCCGCCCCGCAGCACCACCCCGAGCGGGCGCCGGCGAGTAG
CNNNNNNNNNNGGGGGGGGGGGGGGGGGGTGTTTTCTGCGGCAAGCAGGC
AAGACGCCCCAACCCCCCCCCCCCCCCCCCTTCAAAGACCCGTCGAGCGA
AAAAGCGGACTGCTGTGGCCAATTGGATCGGGTCAAACCAACTGATCAAA
ACGCGTTCCTTCCCCCCGAACGCATCGAAAGTCCAGCCCTGAGTGGTTGT
TGCACTTTAGTTCACGCCTTTCGAGCGCGTTCGAGCCTCGTGACTGGTCC
GCCCGCCCCACACCTCACTGCCCTCCCCCCCCCCCAATTTCAGGCAGCGC
TACGGAGCCCCCCACGGGAGCCAGCGGGGCACCATCAATCGCCCTTCCTC
CACGGGCTCGGATTCCTCCCGCCCGGGGTCGTCCGGCTCGGGCTCTCCGC
GAGTCCTTCCTCCCGCGATCTCCACCGGGGATACCGACACCGCCGTTGCC
ACGGGGGAGAGCGTGGCTTCTCCGCTCCATCTGCTGGGCCTTGCTGCCGC
GGCCGCGGCGGCGACGAGCAGTATCCCGGCCACCGACGGCAGCAGGCCGG
GGTCGCCGTCCTTTGGGACTGAAGGGGGTACGGCGGCGACGCAGCAGCAG
CAGCAGCAGCAGCAGCAACACCACCACCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4824:2573..3502+

>mRNA_L-elsbetiae_contig4824.12714.1 ID=mRNA_L-elsbetiae_contig4824.12714.1|Name=mRNA_L-elsbetiae_contig4824.12714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig4824:2573..3502+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAAGAACGTCTCCCGCGGGGGGGGTGCAAGGACAAGGGGGGGGGAGC
TCCCCGAGGAGGAAGAACGTCTCCCGCGGGGGGGGTGCAAGGACAAGGGG
GGGGGAGCTCCCCGAGGCAGCGCTACGGAGCCCCCCACGGGAGCCAGCGG
GGCACCATCAATCGCCCTTCCTCCACGGGCTCGGATTCCTCCCGCCCGGG
GTCGTCCGGCTCGGGCTCTCCGCGAGTCCTTCCTCCCGCGATCTCCACCG
GGGATACCGACACCGCCGTTGCCACGGGGGAGAGCGTGGCTTCTCCGCTC
CATCTGCTGGGCCTTGCTGCCGCGGCCGCGGCGGCGACGAGCAGTATCCC
GGCCACCGACGGCAGCAGGCCGGGGTCGCCGTCCTTTGGGACTGAAGGGG
GTACGGCGGCGACGCAGCAGCAGCAGCAGCAGCAGCAGCAACACCACCAC
CGCAGCGCTACGGAGCCCCCCACGGGAGCCAGCGGGGCACCATCAATCGC
CCTTCCTCCACGGGCTCGGATTCCTCCCGCCCGGGGTCGTCCGGCTCGGG
CTCTCCGCGAGTCCTTCCTCCCGCGATCTCCACCGGGGATACCGACACCG
CCGTTGCCACGGGGGAGAGCGTGGCTTCTCCGCTCCATCTGCTGGGCCTT
GCTGCCGCGGCCGCGGCGGCGACGAGCAGTATCCCGGCCACCGACGGCAG
CAGGCCGGGGTCGCCGTCCTTTGGGACTGAAGGGGGTACGGCGGCGACGC
AGCAGCAGCAGCAGCAGCAGCAGCAACACCACCACC
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