mRNA_L-elsbetiae_contig4823.12712.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4823.12712.1
Unique NamemRNA_L-elsbetiae_contig4823.12712.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4823.12712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4823contigL-elsbetiae_contig4823:5985..7675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4823.12712.1prot_L-elsbetiae_contig4823.12712.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4823 5985..7673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816473.228512-CDS-L-elsbetiae_contig4823:5984..60641622816473.228512-CDS-L-elsbetiae_contig4823:5984..6064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4823 5985..6064 +
1691683585.3760753-CDS-L-elsbetiae_contig4823:5984..60641691683585.3760753-CDS-L-elsbetiae_contig4823:5984..6064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4823 5985..6064 +
1622816473.240634-CDS-L-elsbetiae_contig4823:6419..66731622816473.240634-CDS-L-elsbetiae_contig4823:6419..6673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4823 6420..6673 +
1691683585.3863966-CDS-L-elsbetiae_contig4823:6419..66731691683585.3863966-CDS-L-elsbetiae_contig4823:6419..6673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4823 6420..6673 +
1622816473.255339-CDS-L-elsbetiae_contig4823:7650..76731622816473.255339-CDS-L-elsbetiae_contig4823:7650..7673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4823 7651..7673 +
1691683585.3968878-CDS-L-elsbetiae_contig4823:7650..76731691683585.3968878-CDS-L-elsbetiae_contig4823:7650..7673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4823 7651..7673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4823.12712.1

>prot_L-elsbetiae_contig4823.12712.1 ID=prot_L-elsbetiae_contig4823.12712.1|Name=mRNA_L-elsbetiae_contig4823.12712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
SKLWLAQPVRLLGHPFLLPFLFRSQPRQRRTGSRCRSVAAVLAGVRLRPW
MREPAPLVRALASGRGTGRPRTWTATSLRSPRGVMDQETATLRARTTAAV
NPAMVTTLVNQGGSPPEDG
back to top

mRNA from alignment at L-elsbetiae_contig4823:5985..7675+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4823.12712.1 ID=mRNA_L-elsbetiae_contig4823.12712.1|Name=mRNA_L-elsbetiae_contig4823.12712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1691bp|location=Sequence derived from alignment at L-elsbetiae_contig4823:5985..7675+ (Laminarionema elsbetiae ELsaHSoW15)
TCGAAGCTGTGGCTGGCGCAGCCCGTGAGGCTGCTGGGTCACCCGTTCCT
GCTGCCGTTTCTCTTCAGGTCACAGCCCAGGTGCCAGTCCCAAGATATTG
AGCACCCACCGCCGAGTGCTGCGGCAATGCGTGCTTTTTCTCCTGCAGGT
ACCACTTATGAGTACCGGGCTAGTGACGTGGAGTTTCTCTCACTTCCTCT
TGATGTTTCATCGCTTCCACGCATTTCATGGAACAAAGACATTGCAGGTC
TGTCTGCTTTCTACTGCGTGCTCACCTTCGCTGCTACGGTAGACAGCAGT
ATACCGCGCGGAACCCAGCCTCTGGTCAGCCACCTCGTGACTGCCGAGCA
CCTTTCCAAGCTGAGTGCTCTGGATGGAAAAGCTGTATTGACTCTAACCG
ACCAGTTGCGCAGCGCACGTATCACACCACCGCAGGCAGCGTCGCACCGG
CAGCCGTTGCCGCAGCGTCGCCGCGGTTCTCGCTGGGGTTCGGCTCAGGC
CTTGGATGCGGGAGCCAGCTCCTCTGGTACGGGCGCTCGCAAGCGGTCGA
GGGACCGGCCGGCCACGAACCTGGACTGCTACCTCCCTGAGGAGTCCCAG
AGGCGTGATGGACCAAGAGACCGCCACCCTTCGAGCTCGGACAACGGCCG
CCGTCAACCCCGCCATGGTCACCACTCTGGTAAACCAAGGCAAGTTATGC
AGTCACTGTTGTCTTAAAGTAGTGATGACTCTCCGCACACTTCTCCTCCC
CGCCGCATGTCACTAGCCCCCAGTGCACATCAGCGGTTGTCTCCGGTAGA
CCGCGTGGCACAGCCTGTAGGTGGCGTCAAAGCAGCCGCGCCTGGAACGG
TCGGCGTTGGTAACTCTGTGCAGCCGTCGCCCCATGTTCCATCGCATGCA
TCGACGGCTAATTCGAACGTGGAAGGTCTTTTGCTTGAAGCTGTCACCAT
GATGAAACAAGTCCTTAGCTTGCAACAGCCGGCTGCACAGCCACACAGCA
TGCCCGCCGCACCCCAGATCGTTCAACCCCCTTTGGCCCAGTCTTCGCAG
TCCAGCATGCCGCAGCGGGGGCTGCCCCAGCAGTCGGCTGCGCCATTTAT
GGTCACCGCGCCCTCGGCGGGAGCGCCCACGGGCACAGCGGTGCCCCCAC
CACCGCCAGGACCACCTCTGGACTGGCCACCGGTGTTGGAGACACCCCGC
GCTGATGTTCGGGCATCGCCGCCGAGGCAGGCCGTCTCGGCACCGCCGCC
GCCGCCGCCCCCACCACCGGTACCAGAGATGGGGCCAGAGGACGATGCCT
CCCGGCCGCTTTCGTCTGCTGGGGCACGCCGGCATCATGACGAAGCCGAC
GCCGTTGCGGCCCGAGAGGCCCGCGAACGGATACTTCGTGTTCAGAAACA
GTCCTCATGGCTTAACGTCTCCAACCTTGGGCGGATCTCCTCGTTGCCGC
TCGCCGACGCTGATGATAATTTTTCGCATTTTTGTCGCCGCCTGTGAAGG
GATCACCAAAGATGTTCTGGAATTTGGTGACGTTGACCAAACATTCACCT
CAGCGTCGTGGGTGCCAAGCTGGTTCCCTTGGCTCCGCAAGCGCATCTCT
TCGGCTGTCGTGGACCCTGAGCAAAACACTGTCACTACCGATATCCTTGC
TGCCGCTTTCAAACAGGTGGAAGCCCACCTGAAGACGGATG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4823:5985..7675+

>mRNA_L-elsbetiae_contig4823.12712.1 ID=mRNA_L-elsbetiae_contig4823.12712.1|Name=mRNA_L-elsbetiae_contig4823.12712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig4823:5985..7675+ (Laminarionema elsbetiae ELsaHSoW15)
TCGAAGCTGTGGCTGGCGCAGCCCGTGAGGCTGCTGGGTCACCCGTTCCT
GCTGCCGTTTCTCTTCAGGTCACAGCCCAGTCGAAGCTGTGGCTGGCGCA
GCCCGTGAGGCTGCTGGGTCACCCGTTCCTGCTGCCGTTTCTCTTCAGGT
CACAGCCCAGGCAGCGTCGCACCGGCAGCCGTTGCCGCAGCGTCGCCGCG
GTTCTCGCTGGGGTTCGGCTCAGGCCTTGGATGCGGGAGCCAGCTCCTCT
GGTACGGGCGCTCGCAAGCGGTCGAGGGACCGGCCGGCCACGAACCTGGA
CTGCTACCTCCCTGAGGAGTCCCAGAGGCGTGATGGACCAAGAGACCGCC
ACCCTTCGAGCTCGGACAACGGCCGCCGTCAACCCCGCCATGGTCACCAC
TCTGGTAAACCAAGGCAGCGTCGCACCGGCAGCCGTTGCCGCAGCGTCGC
CGCGGTTCTCGCTGGGGTTCGGCTCAGGCCTTGGATGCGGGAGCCAGCTC
CTCTGGTACGGGCGCTCGCAAGCGGTCGAGGGACCGGCCGGCCACGAACC
TGGACTGCTACCTCCCTGAGGAGTCCCAGAGGCGTGATGGACCAAGAGAC
CGCCACCCTTCGAGCTCGGACAACGGCCGCCGTCAACCCCGCCATGGTCA
CCACTCTGGTAAACCAAGGTGGAAGCCCACCTGAAGACGGAGTGGAAGCC
CACCTGAAGACGGA
back to top