mRNA_L-elsbetiae_contig4821.12711.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4821.12711.1
Unique NamemRNA_L-elsbetiae_contig4821.12711.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4821.12711.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 2.000e-89
Identity = 170/347 (48.99%), Postives = 212/347 (61.10%), Query Frame = 1 
Query:   31 LGSRSGPGASNEAWETLRFSVDFWSWTIWRLNEFVPPQQPATITMLDAFLGGLPVHCWEEVMEHAELPSRPFEHELSPAEFTRVMGAFLLRRNDAHAYRRKQSVEQYGPVRESTGGISLSLMSTESTPFLVVAKLPAGVTHADMATAFRPDAEVPDMIVFEEIEVPITSGVFFGATKANTMPQMAALLSYRSEPQARAMLEKWNGEPLHPRHPQRLTVQFSLGLNRGR----IWIGNFSGVYLDALELVDFAERTWPPGTLVRPVFSDKQGYVQSVHVEFPSCKTARDAIRHLRDMCPATAVGATGRNRAVTPTPGDGFGFIGGMKCSILFSPLLAALPGRCYRVGE 1059
            +G   G  +  EAWETL+ S+DFW W I RL  F P  Q +T+T +D FLGGLPV CW EVME A L  R  E  LSP EF R++   L  RN A  + R ++    G   E+  GISLSL+S+  TPFL+V  LPA VTHA+M TAFRPDA VPD ++FE+I++P+  GV  G+   N MPQ AA+LS++SE  AR M + W+G  L P+H   L       +  G     IWIG FSG  L A+EL+D+A RTWPP TL+RPVFS+    V+SVH+ FPSC +ARDAI  LR   P   +       A       G G+I G  CS+LFSPLL    GR YRVGE
Sbjct:  521 IGGGGGSFSPKEAWETLKNSLDFWEWIIARLMGF-PRPQTSTVTSVDQFLGGLPVQCWAEVMERAGLSHRTKEDVLSPTEFQRIVETILCHRNAAFCHHRDKAKRHAG--HENFLGISLSLISSTPTPFLMVTDLPADVTHAEMITAFRPDARVPDRVMFEDIDIPVRGGVLAGSKAKNVMPQTAAILSFQSEETARLMRDMWDGGVLRPQHVCVLGGMMLPAVGAGTFFSCIWIGAFSGKQLSAIELMDYATRTWPPDTLMRPVFSEAPSSVESVHLTFPSCLSARDAIEGLRGNQPGKQLPDA---EASDGRADGGVGYIAGTSCSVLFSPLLTLPAGRSYRVGE 861
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4821.12711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1S2_9PHAE2.000e-8948.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4821contigL-elsbetiae_contig4821:6695..11011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1093
Cds size1089
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4821.12711.1prot_L-elsbetiae_contig4821.12711.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4821 6695..11009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816473.1329775-CDS-L-elsbetiae_contig4821:6694..68221622816473.1329775-CDS-L-elsbetiae_contig4821:6694..6822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 6695..6822 +
1691683585.3108814-CDS-L-elsbetiae_contig4821:6694..68221691683585.3108814-CDS-L-elsbetiae_contig4821:6694..6822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 6695..6822 +
1622816473.144545-CDS-L-elsbetiae_contig4821:7511..76711622816473.144545-CDS-L-elsbetiae_contig4821:7511..7671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 7512..7671 +
1691683585.3216455-CDS-L-elsbetiae_contig4821:7511..76711691683585.3216455-CDS-L-elsbetiae_contig4821:7511..7671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 7512..7671 +
1622816473.1551855-CDS-L-elsbetiae_contig4821:8315..85031622816473.1551855-CDS-L-elsbetiae_contig4821:8315..8503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 8316..8503 +
1691683585.3315082-CDS-L-elsbetiae_contig4821:8315..85031691683585.3315082-CDS-L-elsbetiae_contig4821:8315..8503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 8316..8503 +
1622816473.166906-CDS-L-elsbetiae_contig4821:8749..89391622816473.166906-CDS-L-elsbetiae_contig4821:8749..8939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 8750..8939 +
1691683585.3427196-CDS-L-elsbetiae_contig4821:8749..89391691683585.3427196-CDS-L-elsbetiae_contig4821:8749..8939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 8750..8939 +
1622816473.1809719-CDS-L-elsbetiae_contig4821:9454..96661622816473.1809719-CDS-L-elsbetiae_contig4821:9454..9666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 9455..9666 +
1691683585.3507414-CDS-L-elsbetiae_contig4821:9454..96661691683585.3507414-CDS-L-elsbetiae_contig4821:9454..9666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 9455..9666 +
1622816473.1919138-CDS-L-elsbetiae_contig4821:10798..110091622816473.1919138-CDS-L-elsbetiae_contig4821:10798..11009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 10799..11009 +
1691683585.3619719-CDS-L-elsbetiae_contig4821:10798..110091691683585.3619719-CDS-L-elsbetiae_contig4821:10798..11009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 10799..11009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4821.12711.1

>prot_L-elsbetiae_contig4821.12711.1 ID=prot_L-elsbetiae_contig4821.12711.1|Name=mRNA_L-elsbetiae_contig4821.12711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=363bp
ANALARQTVGLGSRSGPGASNEAWETLRFSVDFWSWTIWRLNEFVPPQQP
ATITMLDAFLGGLPVHCWEEVMEHAELPSRPFEHELSPAEFTRVMGAFLL
RRNDAHAYRRKQSVEQYGPVRESTGGISLSLMSTESTPFLVVAKLPAGVT
HADMATAFRPDAEVPDMIVFEEIEVPITSGVFFGATKANTMPQMAALLSY
RSEPQARAMLEKWNGEPLHPRHPQRLTVQFSLGLNRGRIWIGNFSGVYLD
ALELVDFAERTWPPGTLVRPVFSDKQGYVQSVHVEFPSCKTARDAIRHLR
DMCPATAVGATGRNRAVTPTPGDGFGFIGGMKCSILFSPLLAALPGRCYR
VGERAEGAGKIQA
back to top

mRNA from alignment at L-elsbetiae_contig4821:6695..11011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4821.12711.1 ID=mRNA_L-elsbetiae_contig4821.12711.1|Name=mRNA_L-elsbetiae_contig4821.12711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4317bp|location=Sequence derived from alignment at L-elsbetiae_contig4821:6695..11011+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAATGCGCTGGCCAGACAGACGGTGGGACTGGGCAGCAGGAGCGGTCC
TGGTGCGTCCAACGAAGCCTGGGAGACCTTGCGGTTCAGCGTGGACTTCT
GGAGCTGGACAATCTGGAGATTAAACGAGTGAGTGGGACAAGAGTCCAAG
AGGAGGCCGGCCCGTCTGTACGTGATGGCCTTATCTTCATGTTTTCCTCG
CCCGCCCTCCTTCTTGTGCAGCTTTCGAGCGTGATTTTAGGCCTGTCTGT
CCTTCCAGGGTTATTTCCGGCAAAGGTATACCTCGCCGCACCTCCAAGAG
GAAATAAAGCAACCCTAACCCCCAAGCCCTTGGACGCATGAGATAGAGAG
CGTCACGCAAGAAAGCTGTGCCGATGCTGGCTGTGTTTTCGATTCCGTGG
CGGTAGTGAATAACCGCTGTTGAAGTTATATGTGGCAGGCTTGCTTGCGA
GGGTGTGTGTCGACTCTTGTGTCGTTGAGTGCATCGTTGTAGCCCTGTAA
ATGGACTGCGCAAGCGTGGCAGTCACCAGCCGAGACGGCCACGGTACTGC
TGTGGTGAGTGACATCATAATCGAAGGTTCCGACGATCACAGCGGTAGGT
GATTGCATTCATGATCGCCGTGGGTCGACTACAATAGCAAGCATCCTGAA
CCCCTTTCCCGTCCAAAACCAATTGAAAAACCCACCCTGTTCCTCCGTCC
TTCCCTGGCGTCTCTCTATATAGTTCCACAAGACCACGGTATTTGGTGTC
CATTCACGATCACCGTGGCCGGCCAGCAAGCATACTAACCCTAACAACCC
TAACCCTGAACCTCTAGGTTTGTGCCACCGCAGCAGCCGGCGACGATCAC
CATGCTCGACGCGTTCCTGGGCGGCCTGCCCGTGCACTGCTGGGAGGAGG
TCATGGAGCACGCGGAGCTGCCCTCCCGCCCGTTCGAGCATGAGCTGTCC
CCGGCGGAGTTCACCCGCGTCATGGGGGTGAGTGAGCTAGGGGTCAGGGT
TTTTGGGGTTAAATAGGGGAATAACATTGTGGCTGGGACTGAGCTTAAGG
GTTTACGGCTGGGGTTGGAGTGAGCTGTCCCCGACGGGATTCGCACGCCT
CTTGTTTACCACAACCCAAACCCACAACCCTCGTAGTGCAAACACAACCA
ACCGAGCTCTTAATCCCTGAGAATGTCCCTTCTCGGCGTGACAACGCGCA
CGCCTACCATGGCCCTAACCCCCGCCCCAGCCCCAGCCCAACCCTATCCC
TGAACGTGCCGTTTTCGGGCCTCCCTTCCTCTGCGTGACAACGCGCACGC
CTGCCATGTAGCCCTAACCCCAAATCCGAACCACCCAACACCTGCCTGTT
CAGCCCAGTAGTCTACGCGGGGTTTCTGTCTTAAGCTAACATATGGGAGA
AAGTATGGAAACCGTTTGGGGGGGTCGGTGGTTGGGGTTAGGGTTAGGGT
TAGAGTTAGTAGTATAAAATTAATTTCTGCGTAGGCGGTCCGTTCAGCCC
CCCCCTTTTACGGCGCGACAACGTGCAACGTCCATTTGTTTTTTCAATAC
ATACACACCCCCAACCCTATCCCCGAGATAAGTAAGTCCCGTATATGTAT
CGCTTTCCTTTTCTCCCCCAGGCGTTCCTCTTGCGGCGCAACGACGCGCA
CGCCTACCGGAGGAAGCAGTCCGTGGAGCAGTACGGGCCCGTCCGCGAGA
GCACGGGGGGCATCTCCCTGTCCCTCATGTCGACCGAGAGCACCCCGTTC
CTGGTGGTGGCGAAGCTGCCCGCGGGTGTCACGCACGCCGACATGGCAAC
GGCCTTCCGGTAAGAGAGAGAAAGAGAGGGAGAGGGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAAGGGGCCAGAGGGGCGAACGTCACAACAG
CCAGCCAGTGTTTTTACATAGCAAGGCGAGGTCACAGAATAAACTCCGTG
TGAAATGAAACCTGGTAGGCTCCAAATACTAATACGTTAGAAAAACGCCC
CCCCAACAACAACAACAACAACAACATGCACCGCGCACCCTTTCTTCCGC
AAAAGACCCGACGCTGAGGTGCCAGACATGATCGTCTTTGAGGAGATTGA
GGTTCCAATCACAAGCGGGGTATTCTTCGGCGCCACGAAAGCAAACACGA
TGCCGCAGATGGCGGCGCTTCTGTCGTACCGGTCGGAGCCTCAAGCGCGC
GCGATGCTGGAGAAGTGGAACGGAGAGCCTCTTCACCCCAGACACGTGCG
CTCTTGTTGTTTGTTGTCGTTGTTGTTGTGGTCATTGCTGGTGGTGGATG
TGGTGGTGGTGGTGGAGGTGGTGTTGTTGATGTTGTTGTGGTTGTTCGGG
TGTTGTTTGTCGTTGTTGCTGTTGCTGCTGTTGGTGGTGGTGGTACACAG
GCTGGAAAGGGAGCAACTTCCGCCGGCTAGCGTGAACCGTCATACACAGG
TTGTAGGCCACGTATGTATCATCTCCTGTCCTCAGGTCGACTAGCGCGAA
CCGTCGCTGTTGCTGTTGTTGCTCTTGTTGCCGTCGTTGTTAACTGTTAA
TTGTTGTTTTCGTTTCAAAGTTACGAGGAGATGTTTTACCTTGTTCTTGC
TCCCCTGCCCTTGTTTCAGACGAACAAAACGGTATCGGCGTGACCACAAG
TAAATTGTTATTTTTCGCGGCGAAACAAACCAATCCTGCCGCTGCCGCTG
CCGCCGCTGTTCATTCCATTGTTCTACTCGGCGAAATGGTTAACCTGACG
GACCAACCAGCCGCAACGCCTCACGGTCCAATTCAGCCTTGGCCTCAACC
GCGGCCGCATCTGGATCGGCAACTTCAGCGGCGTCTACCTGGACGCCCTC
GAGCTCGTCGACTTCGCCGAGAGGACGTGGCCGCCCGGCACCCTCGTTCG
GCCGGTCTTTTCGGACAAGCAGGGCTACGTGCAGTCGGTCCACGTGGAGT
TCCCCTCTTGCAAGACGGCAAGGTGAGAAAACGGTTGTTGTTGTTGTTGC
GGTCGTGGTTGTTGCTGATTGATGGGGTATCAAAGTATCAATTAACTTGA
TTATATATTGTTGTGGTATCAAGTATCAATTAACTTGATTATATTAATCA
TGTGATTATCATGTGATATAATCATGTCAATATCACGCTTTTTAACTTGA
TATCTTGATATAATATCACGTGATATATCATGTGATATATCACGCATTTT
GGGGTCGATATATCAAATATCATATCAACCCAAAAAAAAAACTTGATATC
ATTCACTAGTATGTAAGTTGCTGCCGGTGTTGTTGTTGCTTGTTGTTGTG
GTATGTAGTTGCTGGTGTTGTTGTTGTTGTGTTTTTGCTATCCACTGGTT
CGTCTTTTGGAGATGATGCTTGTCAAAAAACAGCACCAACTTCGGTCTTG
AGAGCACGCTTCGGCGCGAAGAAGATTCAAGACAGGCTGGGGTGGGGGGA
TACATGGCGGGATGAATTGAATCACCAAAAAGTGTCTCATCGATACAGTC
AGTCGCACCCTTTGTTTCTGTCCGGCTGTCAAAACCTCTCTTGACCCCCC
CCCCTGCGACTGGTGCAGGAACGGTGCTCCGCTCTGTCTCGAAAGCCTTG
GAAGATGTGTCGTCAACCATCACATATGACGAAAGCCAAGAAACGCACTT
GCGTAACCCCCCATCATTCGGGGAGGAGGGGGCACGCCCTCTGTTCATTC
ACGTCACCTTGTACCTTTTTAGTTTTTTTGCTTATTTGTCACTTGCGTGT
TTAAAATTGGAACCTAGCCTACGTGAGAACCGGGACTCCGTGGGTTCGAA
CCGGTATTCCATATAGTGACGTAAAGTTGGTTCAGTAAAGTGTTAAAACA
CCTAAAATATCCGAACAATTCAGCATGTTTGCGTGCTGTTGTTTTTCACC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGCCCCCTGCGCCAAGGC
CCCTACCGCCACCAAGGGGGCCGCAGGGCAGCGCGCCCGGGGNNNNNNNN
NNGGCGTGAAATTGGTTTAGTAAAATGTTAAAAACCCTAAAATTCCCCAA
CAATTTCGCCGGTTTGCGTTTTGTTTTTTTTTCCCCCCCCCCCCCCCCCC
TCAGAGACGCGATTCGGCACCTTCGAGACATGTGCCCAGCAACAGCAGTG
GGGGCCACCGGACGGAACCGGGCGGTGACGCCCACGCCCGGGGACGGGTT
CGGGTTCATCGGAGGCATGAAGTGCTCCATCCTCTTCTCCCCGCTGCTGG
CTGCGCTTCCCGGAAGATGTTACCGCGTCGGGGAGCGTGCCGAGGGGGCA
GGGAAGATTCAGGCCGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4821:6695..11011+

>mRNA_L-elsbetiae_contig4821.12711.1 ID=mRNA_L-elsbetiae_contig4821.12711.1|Name=mRNA_L-elsbetiae_contig4821.12711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2178bp|location=Sequence derived from alignment at L-elsbetiae_contig4821:6695..11011+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAATGCGCTGGCCAGACAGACGGTGGGACTGGGCAGCAGGAGCGGTCC
TGGTGCGTCCAACGAAGCCTGGGAGACCTTGCGGTTCAGCGTGGACTTCT
GGAGCTGGACAATCTGGAGATTAAACGAGCGAATGCGCTGGCCAGACAGA
CGGTGGGACTGGGCAGCAGGAGCGGTCCTGGTGCGTCCAACGAAGCCTGG
GAGACCTTGCGGTTCAGCGTGGACTTCTGGAGCTGGACAATCTGGAGATT
AAACGAGTTTGTGCCACCGCAGCAGCCGGCGACGATCACCATGCTCGACG
CGTTCCTGGGCGGCCTGCCCGTGCACTGCTGGGAGGAGGTCATGGAGCAC
GCGGAGCTGCCCTCCCGCCCGTTCGAGCATGAGCTGTCCCCGGCGGAGTT
CACCCGCGTCATGGGGGTTTGTGCCACCGCAGCAGCCGGCGACGATCACC
ATGCTCGACGCGTTCCTGGGCGGCCTGCCCGTGCACTGCTGGGAGGAGGT
CATGGAGCACGCGGAGCTGCCCTCCCGCCCGTTCGAGCATGAGCTGTCCC
CGGCGGAGTTCACCCGCGTCATGGGGGCGTTCCTCTTGCGGCGCAACGAC
GCGCACGCCTACCGGAGGAAGCAGTCCGTGGAGCAGTACGGGCCCGTCCG
CGAGAGCACGGGGGGCATCTCCCTGTCCCTCATGTCGACCGAGAGCACCC
CGTTCCTGGTGGTGGCGAAGCTGCCCGCGGGTGTCACGCACGCCGACATG
GCAACGGCCTTCCGGCGTTCCTCTTGCGGCGCAACGACGCGCACGCCTAC
CGGAGGAAGCAGTCCGTGGAGCAGTACGGGCCCGTCCGCGAGAGCACGGG
GGGCATCTCCCTGTCCCTCATGTCGACCGAGAGCACCCCGTTCCTGGTGG
TGGCGAAGCTGCCCGCGGGTGTCACGCACGCCGACATGGCAACGGCCTTC
CGACCCGACGCTGAGGTGCCAGACATGATCGTCTTTGAGGAGATTGAGGT
TCCAATCACAAGCGGGGTATTCTTCGGCGCCACGAAAGCAAACACGATGC
CGCAGATGGCGGCGCTTCTGTCGTACCGGTCGGAGCCTCAAGCGCGCGCG
ATGCTGGAGAAGTGGAACGGAGAGCCTCTTCACCCCAGACACACCCGACG
CTGAGGTGCCAGACATGATCGTCTTTGAGGAGATTGAGGTTCCAATCACA
AGCGGGGTATTCTTCGGCGCCACGAAAGCAAACACGATGCCGCAGATGGC
GGCGCTTCTGTCGTACCGGTCGGAGCCTCAAGCGCGCGCGATGCTGGAGA
AGTGGAACGGAGAGCCTCTTCACCCCAGACACCCGCAACGCCTCACGGTC
CAATTCAGCCTTGGCCTCAACCGCGGCCGCATCTGGATCGGCAACTTCAG
CGGCGTCTACCTGGACGCCCTCGAGCTCGTCGACTTCGCCGAGAGGACGT
GGCCGCCCGGCACCCTCGTTCGGCCGGTCTTTTCGGACAAGCAGGGCTAC
GTGCAGTCGGTCCACGTGGAGTTCCCCTCTTGCAAGACGGCAAGCCGCAA
CGCCTCACGGTCCAATTCAGCCTTGGCCTCAACCGCGGCCGCATCTGGAT
CGGCAACTTCAGCGGCGTCTACCTGGACGCCCTCGAGCTCGTCGACTTCG
CCGAGAGGACGTGGCCGCCCGGCACCCTCGTTCGGCCGGTCTTTTCGGAC
AAGCAGGGCTACGTGCAGTCGGTCCACGTGGAGTTCCCCTCTTGCAAGAC
GGCAAGAGACGCGATTCGGCACCTTCGAGACATGTGCCCAGCAACAGCAG
TGGGGGCCACCGGACGGAACCGGGCGGTGACGCCCACGCCCGGGGACGGG
TTCGGGTTCATCGGAGGCATGAAGTGCTCCATCCTCTTCTCCCCGCTGCT
GGCTGCGCTTCCCGGAAGATGTTACCGCGTCGGGGAGCGTGCCGAGGGGG
CAGGGAAGATTCAGGCCAGACGCGATTCGGCACCTTCGAGACATGTGCCC
AGCAACAGCAGTGGGGGCCACCGGACGGAACCGGGCGGTGACGCCCACGC
CCGGGGACGGGTTCGGGTTCATCGGAGGCATGAAGTGCTCCATCCTCTTC
TCCCCGCTGCTGGCTGCGCTTCCCGGAAGATGTTACCGCGTCGGGGAGCG
TGCCGAGGGGGCAGGGAAGATTCAGGCC
back to top