mRNA_L-elsbetiae_contig4821.12710.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4821.12710.1
Unique NamemRNA_L-elsbetiae_contig4821.12710.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4821.12710.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 7.210e-6
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   22 GPGGEEAVVLACKMVDRHLVRFAGAEIDAAKALFSVLRTES 144
            GP  EEA++LAC  VDRHLVRF GAE++AA AL S+L TES
Sbjct:   85 GPQLEEALLLACTTVDRHLVRFVGAELEAAAALLSILATES 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4821.12710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1S2_9PHAE7.210e-668.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4821contigL-elsbetiae_contig4821:3729..4939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size397
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816473.0816343-CDS-L-elsbetiae_contig4821:3728..38111622816473.0816343-CDS-L-elsbetiae_contig4821:3728..3811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 3729..3811 +
1691683585.2858574-CDS-L-elsbetiae_contig4821:3728..38111691683585.2858574-CDS-L-elsbetiae_contig4821:3728..3811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 3729..3811 +
1622816473.0928552-CDS-L-elsbetiae_contig4821:4625..49381622816473.0928552-CDS-L-elsbetiae_contig4821:4625..4938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 4626..4938 +
1691683585.2963777-CDS-L-elsbetiae_contig4821:4625..49381691683585.2963777-CDS-L-elsbetiae_contig4821:4625..4938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4821 4626..4938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4821.12710.1prot_L-elsbetiae_contig4821.12710.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4821 3729..4938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4821.12710.1

>prot_L-elsbetiae_contig4821.12710.1 ID=prot_L-elsbetiae_contig4821.12710.1|Name=mRNA_L-elsbetiae_contig4821.12710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
LGTARGSGPGGEEAVVLACKMVDRHLVRFAGAEIDAAKALFSVLRTESVV
GRDRAASIKRALERRTNAAAAVAAEGALGSAGDQAGDAAAAATAAEQLQR
RRRHQKRLPLPAVVAAARSLRTLAAANAASTE
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mRNA from alignment at L-elsbetiae_contig4821:3729..4939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4821.12710.1 ID=mRNA_L-elsbetiae_contig4821.12710.1|Name=mRNA_L-elsbetiae_contig4821.12710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1211bp|location=Sequence derived from alignment at L-elsbetiae_contig4821:3729..4939+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGGCACGGCCCGAGGGAGCGGGCCTGGCGGCGAGGAGGCCGTCGTGTT
GGCGTGCAAGATGGTGGACCGACATCTCGTGAGGTGGGCGTGAGAGTGGG
GGTCGGTCAGTCTGTCGTTCTGTCGTCGGTCGGTCGGTCTGTCGTCGGTG
GGTCGGTGGGTCGGTCGGTCGTTCTGTCGGTCGGTCGGTCGGTCGTCGGT
GGATCGTGCGTGCGTGCGTGCGTGCGTGCAGCGCGTTGGCCTTGTTTCCC
TCCCTACCTCCCTCCCGCCCCCCCTCCCTCTGCTCTGCTGCTTCGCTGCT
TGGCCGCTTTGCTGCTTTGCTGTTGTGGAGGCTTCGTGTGCCTCCTGGCT
GGTCGGCGCGATTGTGGAAAAGCGTTGTGGCTATTGTTGTTGATGATCGG
CGTGATTGTAAAAGAGTGTTGTGGCTGTTGGTGGTGTTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTTTCCCATCATTGCCGCTCACATCTCT
ACGCTGCGCCTTTCACCGCTGGTGGGAGATCGATGCGATGCCTTCGGAGG
CCGCAGACTTTTACCCTTCTTTCGCGCGCATGCGGCACTGGCTTGAAAGG
TTTTCTGTCGCTTGTGTGGAGTCTCGGCTGTTTCCCTCAGTCGAGGGGCC
AAGCGAGCGTGCTTCGTCATGCGTCCGCCCCACCGGATACCTATTTTGCT
GAGGTTGCGCCCCCCTCCGAGGCATTGAGCTCGTGATCGCAAAGAAAAGA
GATCGCTCAGTCTCGCCAGCTACGTCCGCCCACTCACAACCTTTATCTTT
CGACCGCCCCGCTCCTCCGCCCCACTCTGTCCCGCTCCTCCGCCCCGCTC
CGCCCCGCTCCGCCCCGCCCCGCCCCGCCCATAAAAAAAAAATCCAGGTT
CGCGGGGGCGGAGATCGATGCTGCAAAGGCGCTGTTCTCCGTCTTGCGGA
CGGAGTCGGTGGTCGGCCGCGACAGGGCAGCGTCCATCAAGCGGGCGCTC
GAGAGGAGAACAAACGCCGCTGCCGCCGTCGCCGCGGAAGGGGCGTTGGG
GTCTGCCGGCGATCAGGCCGGCGACGCGGCGGCGGCGGCGACAGCCGCCG
AGCAGCTGCAGCGGCGGCGGCGGCACCAGAAACGGCTGCCGCTCCCGGCG
GTCGTCGCGGCCGCGAGGTCGTTGCGCACGCTAGCCGCCGCCAACGCCGC
GTCGACAGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4821:3729..4939+

>mRNA_L-elsbetiae_contig4821.12710.1 ID=mRNA_L-elsbetiae_contig4821.12710.1|Name=mRNA_L-elsbetiae_contig4821.12710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig4821:3729..4939+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGGCACGGCCCGAGGGAGCGGGCCTGGCGGCGAGGAGGCCGTCGTGTT
GGCGTGCAAGATGGTGGACCGACATCTCGTGAGCTGGGCACGGCCCGAGG
GAGCGGGCCTGGCGGCGAGGAGGCCGTCGTGTTGGCGTGCAAGATGGTGG
ACCGACATCTCGTGAGGTTCGCGGGGGCGGAGATCGATGCTGCAAAGGCG
CTGTTCTCCGTCTTGCGGACGGAGTCGGTGGTCGGCCGCGACAGGGCAGC
GTCCATCAAGCGGGCGCTCGAGAGGAGAACAAACGCCGCTGCCGCCGTCG
CCGCGGAAGGGGCGTTGGGGTCTGCCGGCGATCAGGCCGGCGACGCGGCG
GCGGCGGCGACAGCCGCCGAGCAGCTGCAGCGGCGGCGGCGGCACCAGAA
ACGGCTGCCGCTCCCGGCGGTCGTCGCGGCCGCGAGGTCGTTGCGCACGC
TAGCCGCCGCCAACGCCGCGTCGACAGAGGTTCGCGGGGGCGGAGATCGA
TGCTGCAAAGGCGCTGTTCTCCGTCTTGCGGACGGAGTCGGTGGTCGGCC
GCGACAGGGCAGCGTCCATCAAGCGGGCGCTCGAGAGGAGAACAAACGCC
GCTGCCGCCGTCGCCGCGGAAGGGGCGTTGGGGTCTGCCGGCGATCAGGC
CGGCGACGCGGCGGCGGCGGCGACAGCCGCCGAGCAGCTGCAGCGGCGGC
GGCGGCACCAGAAACGGCTGCCGCTCCCGGCGGTCGTCGCGGCCGCGAGG
TCGTTGCGCACGCTAGCCGCCGCCAACGCCGCGTCGACAGAG
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