mRNA_L-elsbetiae_contig482.12709.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig482.12709.1
Unique NamemRNA_L-elsbetiae_contig482.12709.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig482.12709.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.020e-10
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:  229 TVARGITDQAATAAAELRAHATGLVAAGLISRQLSDLIVNRGFAAHLVHR 378
            T A  + D+A +A AELRAHATGL+AAGL+SR+LSDLIVN+GFAAHLV R
Sbjct:  315 TAAEVLADRA-SAEAELRAHATGLLAAGLLSRELSDLIVNKGFAAHLVQR 363
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BLAST of mRNA_L-elsbetiae_contig482.12709.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.530e-10
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:  229 TVARGITDQAATAAAELRAHATGLVAAGLISRQLSDLIVNRGFAAHLVHR 378
            T A  + D+A +A AELRAHATGL+AAGL+SR+LSDLIVN+GFAAHLV R
Sbjct:  334 TAAEILADRA-SAEAELRAHATGLLAAGLLSRELSDLIVNKGFAAHLVQR 382
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig482.12709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHI0_ECTSI4.020e-1072.00LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JDL7_9PHAE5.530e-1072.00LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig482contigL-elsbetiae_contig482:38003..38381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue9.3e-09
Seed eggNOG ortholog2880.D7FHI0
Preferred nameVPRBP
KEGG koko:K10744,ko:K11789
KEGG Pathwayko03030,map03030
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000151,GO:0001650,GO:0001775,GO:0002200,GO:0002376,GO:0002520,GO:0002521,GO:0002562,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016301,GO:0016310,GO:0016444,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0030331,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0034641,GO:0035173,GO:0035184,GO:0035212,GO:0035257,GO:0035258,GO:0035405,GO:0036211,GO:0040008,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045321,GO:0045892,GO:0045934,GO:0046483,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990164,GO:1990234,GO:1990244,GO:1990245,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone kinase activity (H2A-T120 specific)
EggNOG OGsKOG1832@1,KOG1832@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko04121
Exons1
Model size379
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816472.82205-CDS-L-elsbetiae_contig482:38002..383801622816472.82205-CDS-L-elsbetiae_contig482:38002..38380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig482 38003..38380 +
1691683585.1385033-CDS-L-elsbetiae_contig482:38002..383801691683585.1385033-CDS-L-elsbetiae_contig482:38002..38380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig482 38003..38380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig482.12709.1prot_L-elsbetiae_contig482.12709.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig482 38003..38380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig482.12709.1

>prot_L-elsbetiae_contig482.12709.1 ID=prot_L-elsbetiae_contig482.12709.1|Name=mRNA_L-elsbetiae_contig482.12709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
VTAEAGLVVAAGEGDRSGSGSVSPGEAGGASASGASASDANAGGALGVGG
HRAGACAGGGVDAAGAGTAGSGASEATVARGITDQAATAAAELRAHATGL
VAAGLISRQLSDLIVNRGFAAHLVHR
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mRNA from alignment at L-elsbetiae_contig482:38003..38381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig482.12709.1 ID=mRNA_L-elsbetiae_contig482.12709.1|Name=mRNA_L-elsbetiae_contig482.12709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=379bp|location=Sequence derived from alignment at L-elsbetiae_contig482:38003..38381+ (Laminarionema elsbetiae ELsaHSoW15)
GTGACGGCCGAGGCTGGGCTTGTTGTTGCCGCTGGAGAAGGGGACCGGAG
TGGAAGTGGGAGTGTCTCCCCGGGAGAGGCTGGCGGCGCAAGCGCTAGCG
GCGCAAGCGCTAGCGACGCTAATGCTGGTGGTGCTTTGGGGGTGGGCGGA
CACAGAGCGGGCGCGTGTGCAGGTGGTGGTGTCGACGCCGCCGGCGCCGG
CACCGCCGGAAGTGGCGCTTCCGAGGCGACGGTCGCACGGGGGATCACCG
ACCAGGCGGCGACGGCGGCGGCGGAGCTCCGGGCGCACGCAACGGGGCTG
GTCGCGGCGGGGCTGATCTCCCGGCAGCTGTCCGACCTGATCGTCAACAG
AGGCTTCGCGGCCCACCTGGTGCACCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig482:38003..38381+

>mRNA_L-elsbetiae_contig482.12709.1 ID=mRNA_L-elsbetiae_contig482.12709.1|Name=mRNA_L-elsbetiae_contig482.12709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig482:38003..38381+ (Laminarionema elsbetiae ELsaHSoW15)
GTGACGGCCGAGGCTGGGCTTGTTGTTGCCGCTGGAGAAGGGGACCGGAG
TGGAAGTGGGAGTGTCTCCCCGGGAGAGGCTGGCGGCGCAAGCGCTAGCG
GCGCAAGCGCTAGCGACGCTAATGCTGGTGGTGCTTTGGGGGTGGGCGGA
CACAGAGCGGGCGCGTGTGCAGGTGGTGGTGTCGACGCCGCCGGCGCCGG
CACCGCCGGAAGTGGCGCTTCCGAGGCGACGGTCGCACGGGGGATCACCG
ACCAGGCGGCGACGGCGGCGGCGGAGCTCCGGGCGCACGCAACGGGGCTG
GTCGCGGCGGGGCTGATCTCCCGGCAGCTGTCCGACCTGATCGTCAACAG
AGGCTTCGCGGCCCACCTGGTGCACCGGGTGACGGCCGAGGCTGGGCTTG
TTGTTGCCGCTGGAGAAGGGGACCGGAGTGGAAGTGGGAGTGTCTCCCCG
GGAGAGGCTGGCGGCGCAAGCGCTAGCGGCGCAAGCGCTAGCGACGCTAA
TGCTGGTGGTGCTTTGGGGGTGGGCGGACACAGAGCGGGCGCGTGTGCAG
GTGGTGGTGTCGACGCCGCCGGCGCCGGCACCGCCGGAAGTGGCGCTTCC
GAGGCGACGGTCGCACGGGGGATCACCGACCAGGCGGCGACGGCGGCGGC
GGAGCTCCGGGCGCACGCAACGGGGCTGGTCGCGGCGGGGCTGATCTCCC
GGCAGCTGTCCGACCTGATCGTCAACAGAGGCTTCGCGGCCCACCTGGTG
CACCGG
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