mRNA_L-elsbetiae_contig4819.12704.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4819.12704.1
Unique NamemRNA_L-elsbetiae_contig4819.12704.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4819.12704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4819contigL-elsbetiae_contig4819:5597..6749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size451
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4819.12704.1prot_L-elsbetiae_contig4819.12704.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4819 5616..6749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816472.5895882-UTR-L-elsbetiae_contig4819:5596..56151622816472.5895882-UTR-L-elsbetiae_contig4819:5596..5615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4819 5597..5615 +
1691683584.9675071-UTR-L-elsbetiae_contig4819:5596..56151691683584.9675071-UTR-L-elsbetiae_contig4819:5596..5615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4819 5597..5615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816472.5994039-CDS-L-elsbetiae_contig4819:5615..56441622816472.5994039-CDS-L-elsbetiae_contig4819:5615..5644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4819 5616..5644 +
1691683584.977846-CDS-L-elsbetiae_contig4819:5615..56441691683584.977846-CDS-L-elsbetiae_contig4819:5615..5644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4819 5616..5644 +
1622816472.6110482-CDS-L-elsbetiae_contig4819:6346..67491622816472.6110482-CDS-L-elsbetiae_contig4819:6346..6749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4819 6347..6749 +
1691683584.9882317-CDS-L-elsbetiae_contig4819:6346..67491691683584.9882317-CDS-L-elsbetiae_contig4819:6346..6749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4819 6347..6749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4819.12704.1

>prot_L-elsbetiae_contig4819.12704.1 ID=prot_L-elsbetiae_contig4819.12704.1|Name=mRNA_L-elsbetiae_contig4819.12704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MSSLVEVSASCVADNKSNKHDPQGPGTTAGAGAGAAAAAVLQPHPQVQRD
TNPPQQGLAENVIPSGVLLFPPRGATATGIAGKKIRFHDQTSPRSEKEIL
RPSTSTSAHEIGTLRGRKRDPGSGGTGDVGGCGGVGVDICVSVG
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mRNA from alignment at L-elsbetiae_contig4819:5597..6749+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4819.12704.1 ID=mRNA_L-elsbetiae_contig4819.12704.1|Name=mRNA_L-elsbetiae_contig4819.12704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1153bp|location=Sequence derived from alignment at L-elsbetiae_contig4819:5597..6749+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGGGAACGCTGCAGCGATGTCTTCTCTCGTAGAGGTCTCCGCCAGGT
GAGAAGAAAAACAACTTACCCCTCGCCCAACACGACCGGGGCTGAGTGCG
TGGGACGTGGGTTTTGAGGATTGGCGAACGTACAGGGTAGTAGTGTCGAC
GGTGGAGGGGCGGGGGCACGAGAGGAATTCCTCCCGCTTCAGTGCCGTAC
GGTCGGAGCAATGAGCACCGCCGTACCATTACTACAATACGCACTGGTGA
GGCGTGAGTGTGGACCGCAAATCACGTTGGCGAGCCAGCCACACGTGGCA
TGTGATATCACCTCCCCTAACCGTGTCGGTTTTGTGGCTCAATTTCGGCA
CTACACATATTTACCGTATGTAGTCTGCATGGGAACACGGCCGAAAAGGC
CAGAAAAAGCAGGTATTTACTTCAGAAATGCGGTACTTTTCGTCCGACGC
ATTCAATCTGCATCGCCACCACTCCCCCCGCCCGTGGAGGAATCGAAAGG
TGGCACCTTACAAACGGACCAAGGCGGCAGTTGTTCATCCTACTAAACGT
TAACTGTTGTTGATCGGAAGGCCGGAGAGAGGGTCGCGCAAGAACATTTG
CCCAATGTGTTGGAATACTGCTGTACTTTTAAAAAACCGCAAAATTACCT
TGACCTCTAGCCCGTTTGGTAAAAGGGCGAGCAAGCGCGCCAAATCGGGT
GTGTAAAAAGAACGAACTCCTCCCCTTGTGAACCCTATTGGTGGCGGCAG
CTGCGTCGCCGACAATAAGAGTAACAAGCACGACCCCCAAGGACCGGGCA
CAACAGCAGGGGCAGGGGCCGGAGCAGCAGCAGCAGCAGTACTGCAACCA
CACCCTCAAGTGCAACGCGACACGAACCCACCACAACAAGGCCTTGCGGA
AAATGTGATTCCCAGTGGAGTGCTACTGTTTCCGCCGCGTGGCGCAACAG
CTACCGGTATTGCTGGGAAAAAGATTCGTTTCCATGACCAGACCTCGCCA
CGGTCTGAAAAAGAGATCCTGCGGCCGTCAACTTCAACCTCGGCGCACGA
AATCGGGACGTTGCGTGGCCGCAAAAGGGATCCAGGCAGTGGTGGCACAG
GCGACGTCGGGGGTTGTGGGGGCGTAGGTGTAGACATATGTGTAAGCGTG
GGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4819:5597..6749+

>mRNA_L-elsbetiae_contig4819.12704.1 ID=mRNA_L-elsbetiae_contig4819.12704.1|Name=mRNA_L-elsbetiae_contig4819.12704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig4819:5597..6749+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCTCTCGTAGAGGTCTCCGCCAGATGTCTTCTCTCGTAGAGGTC
TCCGCCAGCTGCGTCGCCGACAATAAGAGTAACAAGCACGACCCCCAAGG
ACCGGGCACAACAGCAGGGGCAGGGGCCGGAGCAGCAGCAGCAGCAGTAC
TGCAACCACACCCTCAAGTGCAACGCGACACGAACCCACCACAACAAGGC
CTTGCGGAAAATGTGATTCCCAGTGGAGTGCTACTGTTTCCGCCGCGTGG
CGCAACAGCTACCGGTATTGCTGGGAAAAAGATTCGTTTCCATGACCAGA
CCTCGCCACGGTCTGAAAAAGAGATCCTGCGGCCGTCAACTTCAACCTCG
GCGCACGAAATCGGGACGTTGCGTGGCCGCAAAAGGGATCCAGGCAGTGG
TGGCACAGGCGACGTCGGGGGTTGTGGGGGCGTAGGTGTAGACATATGTG
TAAGCGTGGGCCTGCGTCGCCGACAATAAGAGTAACAAGCACGACCCCCA
AGGACCGGGCACAACAGCAGGGGCAGGGGCCGGAGCAGCAGCAGCAGCAG
TACTGCAACCACACCCTCAAGTGCAACGCGACACGAACCCACCACAACAA
GGCCTTGCGGAAAATGTGATTCCCAGTGGAGTGCTACTGTTTCCGCCGCG
TGGCGCAACAGCTACCGGTATTGCTGGGAAAAAGATTCGTTTCCATGACC
AGACCTCGCCACGGTCTGAAAAAGAGATCCTGCGGCCGTCAACTTCAACC
TCGGCGCACGAAATCGGGACGTTGCGTGGCCGCAAAAGGGATCCAGGCAG
TGGTGGCACAGGCGACGTCGGGGGTTGTGGGGGCGTAGGTGTAGACATAT
GTGTAAGCGTGGGC
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