mRNA_L-elsbetiae_contig4815.12701.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4815.12701.1
Unique NamemRNA_L-elsbetiae_contig4815.12701.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE)

HSP 1 Score: 507 bits (1305), Expect = 1.630e-162
Identity = 290/536 (54.10%), Postives = 364/536 (67.91%), Query Frame = 1
Query:   28 ANRVKVPPGAPRLRDWYVEREAVIAEACDRLGAGSGTMDSXXXXXXXXXXEGPRMVGLAGPSGAGKSTVASMVIAREDVRTFFHSGILWLQAGKGVKSRLPELMIHLAGMVHETVMLGACRPPRKLGFGLDPEDGAAYIREVVDESSQCFLVVADDVWEVEVLEALRRAGAWVLYTSCRDDLLTEEEPVLLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVKKLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKKPLSWRAAALRAGLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAEDMEAAAGVAATLERWTVLTLEDGGKYRVRDEHADFIQGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARADGKGAPPPRPYDAALAAMGASSADRPPALETAAYFDGRRQDWSEAYTKFSQVLLIQENSGSGSGSSSLGTAGTLNELGACARKAGREDEAEGCYRKALSIQEQQL 1635
            A  V VP GAPR+ +W+VER+  +AEACD LG GSG  +           E PR+VG++GP G+GKST+ASMVIAR+DVR +F+ G+LWL  G+G K  LPELM+HLA MV+ETV+  ACRPPR  G G+DPEDGA YI EVV+ES+  FLVVADD+ E EVLE L+ AG WVLYTS RDDLLT     LLRLD V + E  +VLRRAA L             LP AA +LM RCE+G   LAF GRWGVVRG+SDE+AWR A+G +A+A+KRG  G+  L+WR A LR G +EL  D+   +ELYLSLA+LP+GLAF S VAAVLLYG++ SA+++EAA     TLER ++LTLE  GKYRV + HADF+  R C +           A+ E R+ AL+RWRGY S + AL T+SS WLV+ WD +A+ +G G P   PYDAAL  +  SS     AL+ AA F  RR+D  EAYTK  Q+ LI+E +  G   SSL  A TL+ LG C  KAGR++EAE  Y++AL+I  ++L
Sbjct:  119 AGEVAVPSGAPRIHEWHVERKEAVAEACDSLGIGSGKSE---------FFEMPRVVGMSGPGGSGKSTLASMVIARQDVREYFYKGVLWLPVGEGAKHCLPELMLHLARMVYETVLRKACRPPRLAGVGVDPEDGAGYIHEVVNESNHRFLVVADDIREPEVLEELKWAGVWVLYTSRRDDLLTGAP--LLRLDAVTKEEGGMVLRRAAGLGDDAT--------LPPAAHELMQRCEYGAMQLAFAGRWGVVRGKSDEEAWRAALGHIAEAQKRGGNGRL-LAWRDAMLRIGPDELEADSLHTKELYLSLAILPKGLAFRSKVAAVLLYGDECSADELEAAGKALETLERLSILTLEVSGKYRVHEVHADFV--RECEV-----------ANNEEREMALARWRGYASDLRALSTYSSAWLVKIWDVIAQLEGTG-PVASPYDAALDRVDPSSPKLAKALKRAARFHWRREDRLEAYTKQYQLRLIEETAAEGP--SSLAVAKTLHILGMCVYKAGRKEEAEDNYQRALTIFRERL 618          
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: A0A6H5KXU5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU5_9PHAE)

HSP 1 Score: 442 bits (1138), Expect = 2.400e-138
Identity = 267/544 (49.08%), Postives = 335/544 (61.58%), Query Frame = 1
Query:    1 QDQ--RRVVALANRVKVPPGAPRLRDWYVEREAVIAEACDRLGAGSGTMDSXXXXXXXXXXEGPRMVGLAGPSGAGKSTVASMVIAREDVRTFFHSGILWLQAGKGVKSRLPELMIHLAGMVHETVMLGACRPPRKLGFGLDPEDGAAYIREVVDESSQCFLVVADDVWEVEVLEALRRAGAWVLYTSCRDDLLTEEEPVLLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVK-KLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKKPLSWRAAALRAGLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAEDMEAAAGVAATLERWTVLTLEDG-GKYRVRDEHADFIQGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARADGKGAPPPRPYDAALAA-MGASSADRPPALETAAYFDGRRQDWSEAYTKFSQVLLIQENSGSGSGSSSLGTAGTLNELGACARKAGREDEAEGCYRKALS 1617
            QDQ  + V+    RV +P GAP +RDWYVER  V A+ C  LG G+               E PRMVGLAGP GAGKSTVASMV+ + DV+ FF   +LWL  GKG K RLP LM  LA  V ETV+    R PR+   G++ EDGAAYIRE   +    FLVVADDVW+ EVL  LRRAGAWV+YT+ + +L  E   +  RL++VLE EAE++LRRAADL         G K +LP AA +LM RC+F V  LA VGRWG +RGRS E+AWR A+  + + ++ G  G + L WRAA LRAGL  LA DNPQ  ELY +LA+LP GLAFP  VA +LLYG+D S   ++AA  V  TLER ++LTLE+  G Y V + H DF+  R               A    RD AL RWR Y+SSV AL T+SS WL + W+ LA+ +G+G     PY+AAL+A M  S  +   AL  AA F   R DWSEA+ K+S++LLI+E +   +G      A  L+ LG CA + GRE E EG  R+AL+
Sbjct:  159 QDQTLKAVMEKPGRVNIPSGAPSIRDWYVERVKVEAQICHHLGIGTSN------GIPSFPEEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPTLMFELAKTVRETVLQKMARRPREATVGINSEDGAAYIREEAGKGDTRFLVVADDVWDAEVLAELRRAGAWVIYTTRKAELFPETPAI--RLEEVLEEEAEMMLRRAADL---------GEKTRLPPAAYELMRRCDFSVLDLALVGRWGKIRGRSCERAWRAALDSIIETQRAGGDGGQLLPWRAAVLRAGLGVLASDNPQTTELYYALALLPTGLAFPPEVALILLYGDDFSESALKAAEAVLGTLERLSILTLEENSGWYHVHENHVDFVLDR-------------PLAKHYTRDTALPRWRQYISSVRALNTYSSAWLDKVWEKLAKVEGEGFVR-SPYNAALSAIMDDSEGELLEALRRAAEFHFCRGDWSEAFDKYSELLLIKEQT---AGPDHPDVAKILHNLGMCACEVGREKETEGYLRRALA 668          
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: D7G5Y4_ECTSI (NB-ARC and TPR containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y4_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 1.490e-136
Identity = 257/530 (48.49%), Postives = 322/530 (60.75%), Query Frame = 1
Query:   34 RVKVPPGAPRLRDWYVEREAVIAEACDRLGAGSGTMDSXXXXXXXXXXEGPRMVGLAGPSGAGKSTVASMVIAREDVRTFFHSGILWLQAGKGVKSRLPELMIHLAGMVHETVMLGACRPPRKLGFGLDPEDGAAYIREVVDESSQCFLVVADDVWEVEVLEALRRAGAWVLYTSCRDDLLTEEEPVLLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVKKLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKKPLSWRAAALRAGLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAEDMEAAAGVAATLERWTVLTLEDG-GKYRVRDEHADFIQGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARADGKGAPPPRPYDAAL-AAMGASSADRPPALETAAYFDGRRQDWSEAYTKFSQVLLIQENSGSGSGSSSLGTAGTLNELGACARKAGREDEAEGCYRKALS 1617
            RV +P GAP +RDWYVER  V  + C  LG G+               E PRMVGLAGP GAGKSTVASMV+ + DV+ FF   +LWL  GKG K RLP LM  LA  V ETV+    R PR+   G++ EDGAAYIRE   +    FLVVADDVW+ EVL  LRRAGAWV+YT+ + +L      +  RL++VLE EAE++LRRAADL            +LP AA +LM RC+F V  LA VGRWG +R RS E AWR A+  + + ++ G  G + L WRAA LRAGL  LA DNPQ  ELY +LA+LP GLAFP  VA +LLYG+D S   ++AA  V  TLER ++LTLE+  G Y V + H DF+  R               A    RD AL RWR Y+SSV AL T+SS WL + W+ L++ +G+G     PY+AAL A M  S  +   AL  AA F   R+DWSEA+ K+S +LLI+E +   +G      A  L+ LG CA + GRE E EG  R+AL+
Sbjct:    6 RVNIPSGAPSIRDWYVERVGVATQICHHLGIGTSN------GIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPALMFELANRVRETVLQKMARRPREATVGINSEDGAAYIREEAGKGDTRFLVVADDVWDAEVLGELRRAGAWVIYTTRKTELFPGTPAI--RLEEVLEEEAEMMLRRAADLGEQA--------RLPPAAYELMKRCDFAVLDLALVGRWGNIRRRSCESAWRAALDSIIETQRAGGDGGQLLPWRAAVLRAGLGVLASDNPQTTELYYALALLPTGLAFPPEVALILLYGDDFSESALKAAEAVLGTLERLSILTLEENSGWYHVHENHVDFVLDR-------------PLAKHYTRDTALPRWRRYISSVRALNTYSSAWLDKVWEKLSKVEGEGFVR-SPYNAALNAIMDDSEGELLEALRRAAEFHFCREDWSEAFDKYSNLLLIKEQT---AGPHHPDVAKILHNLGMCACEVGREKETEGYLRRALA 502          
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: A0A6H5JL31_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL31_9PHAE)

HSP 1 Score: 431 bits (1107), Expect = 4.340e-132
Identity = 270/545 (49.54%), Postives = 331/545 (60.73%), Query Frame = 1
Query:    1 QDQRRVVALANRVKVPPGAPRLRDWYVEREAVIAEACDRLGAGSGTMDSXXXXXXXXXXEGPRMVGLAGPSGAGKSTVASMVIAREDVRTFFHSGILWLQAGKGV-KSRLPELMIHLAGMVHETVMLGACRPPRKLGFGLDPEDGAAYIREVVDESSQCFLVVADDVWEVEVLEALRRAGAW-VLYTSCRDDLLTEEEPVLLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVKKLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKKPLSWRAAALRAGLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAE---DMEAAAGVAATLERWTVLTLEDGGKYRVRDEHADFIQGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARADGKGAPPPRPYDAALAAMGASSADRPPALETAAYFDGRRQDWSEAYTKFSQVLLIQENSGSGSGSSSLGTAGTLNELGACARKAGREDEAEGCYRKALSI 1620
            Q+QRRV  LA+ V++P  APR+RD +VER  VI++ C  LG    T                ++VGLAG  G+GKSTVASMVI REDVR FF  G+LWL  G+   + RL EL+  LAGMV+ETV    CRP RK   G D ED AAYI+ +  E  + FLVVADDVW+ EVL+ LRRA  W VLYTS   DLL     VLL  DQ+   EAE+VLR AA+L             LP+AA DLM RCE+    L FVGRW   R R+ E AWR A+  +  A+ RG+G + PLSWRAA L  GLEELA +N  NRELYL+LAV+PRG  FP  VAAVLLYG+  S E   D E A  +  TLERW+++T   GG YRV DEH DFI+  F              A+Q  R+  L RWR Y+SSV AL+T S  WL E W+ LA A G+  P  +PY  AL  +  SSADRP AL TAA F   R+ W  A   FSQ+L+IQE++   +G  S+  A TL+ELG C   +GR +EAE   ++AL I
Sbjct:   12 QEQRRVADLASTVRIPTTAPRIRDRFVERGEVISQVCSLLGIEDHTTAYPAEM---------KVVGLAGAGGSGKSTVASMVIRREDVRAFFPGGVLWLSVGQRAGRDRLLELLTSLAGMVYETVFQKRCRPLRKGVIGTDDEDPAAYIQCLQVERPRRFLVVADDVWQTEVLDELRRASVWGVLYTSRNTDLLPRAPVVLL--DQLDREEAEMVLRNAAELAKDAC--------LPEAAYDLMRRCEYAALDLDFVGRWSRTRRRTSELAWRGALDCIVDAQTRGEG-RLPLSWRAAVLHTGLEELAGENSANRELYLALAVIPRGQPFPPDVAAVLLYGDGRSGEEKEDREEAKNIFETLERWSIITRVGGGWYRVHDEHTDFIRASFA-------------ANQHARNTTLIRWRRYMSSVSALVTLSEDWLSEGWNVLAEAQGEPVPS-QPYLEALGGLAPSSADRPMALRTAASFYRDREQWMPASDYFSQLLIIQEHT---AGVDSVVVARTLHELGLCVYMSGRAEEAELRLKRALRI 519          
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: A0A6H5JK89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK89_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 4.550e-88
Identity = 237/622 (38.10%), Postives = 318/622 (51.13%), Query Frame = 1
Query:    4 DQRRVVALANRVKVPPGAPRLRDWYVEREAVIAEACDRLGAGSGTMDSXXXXXXXXXXEGPRMVGLAGPSGAGKSTVASMVIAREDVRTFFHSGILWLQA-GKGVKSRLPELMIHLAGMVHETVMLGA--------CRPPRKLG-FGLDPEDGAAYIREVV-------DESS------------QCFLVVADDVWEVEVLEALRRAGAWVLYTSCRDDLLTE-------------EEPVLLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVKKLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKK--PLSWRAAALRAGLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGND----------LSAEDMEAAAGVAATLERWTVLTLEDGGKYRVRDEHADFIQGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVE-----AWDALARADGKGAPPPRPYDAALAAMGASSADRPPA-LETAAYFDGRRQDWSEAYTKFSQVL------LIQENSGSGSGSSSLGT----AGTLNELGACARKAGREDEAEGCYRKALSIQEQQLGVDHSDVA 1659
            ++ RV  LA++VKVP  APR++ WY+ R   + + C RLG  SG+             E PRMVGLAGP+G GKSTV S+V+AREDVR +F  GI+WL   GKG + RLP+LM+ LA MV+ET++            RPPR  G    D E+GAAYIR  +       +E                +L+VADDV+E EVLE L+  GAWVLYT+ R                   +   +LRLD + + E E VLRRA+ LD           +LP+ ALDL+      V  LA++GRWGVVRG +D KAW  A+  V    + GDGG++     W  A L AG+ +LAR N + ++LYLSLAVLP+GL+F    AA LL+G             +  D+ A   V   LER +VL LE+GG+Y +   HADF++        +             R RAL RWR + S+  AL      W VE      W  L+  D   +PPP PYDA L  M  S AD   A LE  A       +   A+ K+++++      L +E +G G      G     A  L+ LG  A   G  +EA  C+ +A SI+E++LG  H D A
Sbjct:  228 ERNRVAFLASKVKVPSRAPRIQAWYIPRSETVEDVCARLGVCSGSA-----VGDLGDHEEPRMVGLAGPTGCGKSTVTSLVVAREDVRAYFRDGIVWLPVRGKGAEHRLPDLMLLLANMVYETILKSGEASWSSKKLRPPRTPGGVACDRENGAAYIRGALGITFPGREEGDGGGGSHEQRRWRPRYLIVADDVYEPEVLEELQGIGAWVLYTTTRSASFIRRNGERSEGDGDGGDHADVLRLDNISDAEGETVLRRASGLDAEA--------ELPQPALDLIKSYGSVVMDLAYIGRWGVVRGTTDAKAWEAALNSVFL--EGGDGGQEWTRRRWHTAVLFAGMADLARLNDKAKDLYLSLAVLPKGLSFTPTDAAALLFGGGGDTKATQAAKAATPDLGAVMEVLGVLERCSVLFLEEGGRYCMHGSHADFVRELISCFPLS-------------RKRALGRWREHTSTPAALFA----WPVEDSVRIQWALLSLDDAVESPPP-PYDAMLDGMDQSDADTFSAVLERVAQVQALAGNLEGAHAKYTRLVGVTESRLEREAAGGGDSIRQAGAELLLADRLHNLGMIAGGLGSTEEAFACHGRARSIREERLGASHPDAA 816          
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: D8LT49_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT49_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 2.320e-87
Identity = 224/560 (40.00%), Postives = 308/560 (55.00%), Query Frame = 1
Query:   40 KVPPGAPRLRDWYVEREAVIAEACDRLGAGSGTMDSXXXXXXXXXXEGPRMVGLAGPSGAGKSTVASMVIAREDVRTFF-HSGILWLQAGKGVKSRLPELMIHLAGMVHETVML------GACRPPRKLGFGLDPEDGAAYIREVV-----DESSQCF---LVVADDVWEVEVLEALRRAGAWVLYTS-CRDDLLTEEE-PVLLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVKKLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKKPLSWRAAALRAGLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAEDMEAAAGVAATLERWTVLTLEDGGKYRVRDEHADFI-QGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARAD-GKGAPP-PRPYDAALAAMGASSADRPPALETAAYFDGRRQDWSEAYTKFSQVLLIQENSGSGSGSSSLGTAGTLNELGACARKAGREDEAEGCYRKALSIQEQQLGVDHSDVA 1659
            K P  AP L+DW+++RE V+A  CDRLG                    P +VG+AGPSGAGKST+ASM++AR DVR  F   G++WL  G+G + RL ++M  LA MVHE          G  RPPR    G++PEDGAAY+RE++     + SS  F   LVVADDVWE EVL  LR  GA +LYT+   +DLL       +LR+D+V EGEAE +LRRAA L            KLP AA D++ R       +A+VGRW +VRG++D+ AW   +  V  A+    G    L WR+A LR G+  L   +   +ELYLSL VLPR L+F   V  V    +D SAE+++AA    ATLE+W+VL   +GG+YRV   HAD   QG             ++E D  I   AL+RWR  +S+ EA+LT+ +  LV+ W+ +   + G+GA    +PY   + AM  S A     L   A+F     +   A   +S++L   E+S +      +    T+  LGA A  +GR  EAEG +R+ L+I+E+ L  D + +A
Sbjct:  259 KSPAEAPLLQDWFIQREPVVAAICDRLGVNDRGRSRASGE--------PPVVGVAGPSGAGKSTIASMIVARHDVRGHFSQKGVVWLSVGQGARDRLLDVMYRLAVMVHELADSSSSPDDGPFRPPRTPDIGVEPEDGAAYVREILAADEGERSSGGFGELLVVADDVWEAEVLAELRNTGASILYTTRSEEDLLAASGGSSVLRVDEVTEGEAEELLRRAAAL--------LDYSKLPDAAHDIIRRGGSVAMDVAYVGRWDIVRGKNDQAAWAAVLAHVIDAQNFMKGAAL-LPWRSAVLRVGVTRLGLADQGTKELYLSLGVLPRNLSF--SVDDVTALVSDGSAEELQAATLAMATLEQWSVLVRTEGGRYRVHHSHADMAWQG-------------ISE-DPAILGPALARWRNRVSTAEAVLTWRTEELVDIWETIWSLEIGEGAEDIGQPYAETVDAMDLSDAGAFQLLRRIAFFQWLTNEPDAACMSWSKLLASGEDSAANHPDVHV----TMYTLGAHALISGRTPEAEGWFRRTLAIEEKVLDSDDAAIA 781          
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: A0A6H5JI56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI56_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 2.060e-86
Identity = 226/563 (40.14%), Postives = 309/563 (54.88%), Query Frame = 1
Query:   25 LANRVKVPPGAPRLRDWYVEREAVIAEACDRLGAGS--GTMDSXXXXXXXXXXEGPRMVGLAGPSGAGKSTVASMVIAREDVRTFF-HSGILWLQAGKGVKSRLPELMIHLAGMVHETVML-------GACRPPRKLGFGLDPEDGAAYIREVV-----DESSQCF---LVVADDVWEVEVLEALRRAGAWVLYTS-CRDDLLTEEEPV-LLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVKKLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKKPLSWRAAALRAGLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAEDMEAAAGVAATLERWTVLTLEDGGKYRVRDEHADFI-QGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARAD-GKGAPP-PRPYDAALAAMGASSADRPPALETAAYFDGRRQDWSEAYTKFSQVLLIQENSGSGSGSSSLGTAGTLNELGACARKAGREDEAEGCYRKALSIQEQQLGVD 1644
            L ++ K P  AP L+DW+++RE V+A  CDRLG     G+  S            P +VG+AGPSGAGKST+ASM+IAR DVR  F    I+WL  G+G + RL ++M  LA MVHE V+        G  RPP+    G++PEDGAAY+RE++     + SS  F   LVVADD+WE EVL  LR  GA +LYT+   +DLL       +LR+D+V EGEAE +LRRAADL            KLP AA D++ R       +A+VGRW +VRG +D+ AW   +  V  A+    G    L WR+A LR GL  L   +   +ELYLSL VLPR L+F  G    L+  +D SAE+++AA     TLE+W+VL   +GG+YRV   HAD   QG             ++E D      AL+RWR  +S+ EA+L + +  LV+ W A+   + G+GA    +PY   + AM  S A     L   A+F     +   A   +S++L     SG  S ++       +  LGA A  +GR  EAEG +R+ L+I+E+ L  D
Sbjct:  298 LYSKAKGPAEAPLLQDWFIQREPVVAAICDRLGVNDRGGSRASGE----------PPVVGVAGPSGAGKSTIASMIIARNDVRGHFSEKRIVWLPVGQGARDRLLDVMYRLAVMVHELVVNSSSFPDDGPFRPPQPPDIGVEPEDGAAYVREILTADEGERSSGGFGELLVVADDIWEAEVLAELRSTGASILYTTRSEEDLLAASGGSDVLRVDEVTEGEAEEILRRAADL--------LDHTKLPDAAHDIIRRGGPVAMDVAYVGRWDIVRGNNDQAAWAVVLAHVIDAQNFMKGAAL-LPWRSAVLRVGLTRLGLADQGTKELYLSLGVLPRNLSFSVGDVTALV--SDGSAEELQAATLAITTLEQWSVLVRTEGGRYRVHHSHADMAWQG-------------ISE-DPATLGSALARWRNRVSTAEAVLAWRTEELVDIWQAIWSLEIGEGAAEIGQPYSEIVDAMNLSDAGAFQLLRRIAFFQWMTNEPDAACMSWSKLLA----SGEDSAANDPDVHAIMYTLGAHALVSGRTHEAEGWFRRTLAIEEKVLDSD 821          
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: D7G2X0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X0_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 7.810e-76
Identity = 213/554 (38.45%), Postives = 284/554 (51.26%), Query Frame = 1
Query:  190 MVGLAGPSGAGKSTVASMVIAREDVRTFFHSGILWLQA-GKGVKSRLPELMIHLAGMVHETVMLGA--------CRPPRKLG-FGLDPEDGAAYIREVVD-------------ESSQC------FLVVADDVWEVEVLEALRRAGAWVLYTSCRDDLLTE-----------------EEPVLLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVKKLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKK--PLSWRAAALRAGLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAE-----DMEAAAGVAATLERWTVLTLEDGGKYRVRDEHADFIQGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARADGKGAPPPRPYDAALAAMGASSADRPPA-LETAAYFDGRRQDWSEAYTKFSQVLLIQEN------SGSGSGSSSLGT----AGTLNELGACARKAGREDEAEGCYRKALSIQEQQLGVDHSDVA 1659
            MVGLAGP+G GKSTV S+V+AREDVR  F  GI+WL   GKG + RLP+LM+ LA MV+ETV+            RPPR  G    D E+GAAYIR  +              ES +       +L+VADDV+E EVLE L+  GAWVLYT+ R                       +   +LRLD + + E E VLRRA+ LD           +LP+ ALDL       V  LA++GRWGVV G +D KAW  A+  V    + G+GG++     W  A L AG+ +LAR N + ++LYLSLAVLP+GL+F    AA LL+G D  A      D+ A   V   LE+ +VL LE+GG+Y +   HADF++        +             R RAL RWR + S+  AL  +     V    AL+  D    PPP PYDA L  M  S AD   A LE  A       +   A+ K+++++++ E+      +G G   S  G     A  L+ LG  A   G  +EA  C+ +A SI+E++LG  H D A
Sbjct:    1 MVGLAGPTGCGKSTVTSLVVAREDVRAHFRDGIVWLPVRGKGAEHRLPDLMLLLANMVYETVLKSGEASWSSKKLRPPRTPGGVACDRENGAAYIRGALGITRPGGEEGDGGGESHEQRRWRPRYLIVADDVYEPEVLEELQGIGAWVLYTTTRSASFIRRNGERSEGDXXXXXXXGDHADVLRLDNISDAEGETVLRRASGLDPEA--------ELPQPALDLFKSYGSVVMDLAYIGRWGVVHGTTDVKAWEVALNSVFL--EGGEGGQEWTRRRWHTAVLFAGMADLARLNDKAKDLYLSLAVLPKGLSFTPADAAALLFGGDTKAAKAATPDLGAVMEVLGVLEQCSVLFLEEGGRYCMHGSHADFVRELISCFPLS-------------RKRALGRWREHASTPAALFAWPVEDSVRIQWALSSLDDAVEPPP-PYDAMLDGMDQSDADTFSAVLERVAQVQALAGNLEGAHAKYTRLVVVTESRLEREAAGGGDSISQAGAELLLADRLHNLGMIAGGLGSTEEAFACHGRARSIREERLGASHPDAA 530          
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: D7G246_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G246_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 1.510e-75
Identity = 182/393 (46.31%), Postives = 225/393 (57.25%), Query Frame = 1
Query:  451 VVDESSQCFLVVADDVWEVEVLEALRRAGAWVLYTSCRDDLLTEEEPVLLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVKKLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKKPLSWRAAALRAGLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAEDME---AAAGVAATLERWTVLTLEDGGKYRVRDEHADFIQGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARADGKGAPPPRPYDAALAAMGASSADRPPALETAAYFDGRRQDWSEAYTKFSQVLLIQENSGSGSGSSSLGTAGTLNELGACARKAGREDEAEGCYRKALSI 1620
            V DE  +  LVVADDV E EVL+ L+  GA                              ++VLRRAADLD            LP A  +LM RCEF V  +AFVGRWGVVRGR  EKAW+ A+ R+ +A+  G+G   PLSWRA+ LRAGLEELA DNP N+ELYL+LAVLP GL FPS VAA LLY + LS ED+E    A  VAATLERW++L    GG YRV DEH+DFI+G   T             +++ +DR L RWR Y+SSV ALL      LV+ WD+LA +D      PRPYD AL AM   SA+ P AL  A +F   R+D   A + FS++L +QE + +  G   L    TL  L   A  +GR +EAE   R+A +I
Sbjct:    2 VEDEGRERVLVVADDVREAEVLQELKTEGA------------------------------DMVLRRAADLDESAV--------LPDAGYELMRRCEFVVLDIAFVGRWGVVRGRRKEKAWQMALDRILEAQAGGEG-VGPLSWRASVLRAGLEELAVDNPLNKELYLALAVLPMGLTFPSEVAAALLYDDALSGEDLEDLEVAEEVAATLERWSILIRMGGGNYRVHDEHSDFIRGCLST-------------NKDTQDRVLRRWRRYISSVRALLACEPEDLVKIWDSLA-SDQDDVIDPRPYDRALEAMDMPSAELPRALHLAGFFYMVREDGEGACSTFSKLLKLQETTVTSDG---LIVWETLRSLHLSAYMSGRWEEAEVTQRRADAI 338          
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 9.920e-65
Identity = 191/539 (35.44%), Postives = 264/539 (48.98%), Query Frame = 1
Query:   28 ANRVKVPPGAPRLRDWYVEREAVIAEACDRLGAGSGTMDSXXXXXXXXXXEGPRMVGLAGPSGAGKSTVASMVIAREDVRTFFHSGILWLQAGKGVKSRLPELMIHLAGMVHETVMLGACRPPRKLGFGLDPEDGAAYIREVVDESS-----QCFLVVADDVWEVEVLEALRRAGAWVLYTSCRDDLLTEEEPVLLRLDQVLEGEAELVLRRAADLDGXXXXXXXGVKKLPKAALDLMARCEFGVSPLAFVGRWGVVRGRSDEKAW-------RTAIGRVAKARKRGDGGKKPLSWRAAALRAGLEELAR--DNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAEDMEAAAGVAATLERWTVLT--------LEDGGKYRVRDEHADFIQGRFCTIGAAAAAAAVTEADQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARADGKGAPPPRPYDAALAAMGASSADRPPALETAAYFDGRRQDWSEAYTKFSQVLLIQENSGSGSGSSSLGTAGTLNELGACARKAGR 1578
            A   K+P   P  + W+VER  V+    + L A  G                P +VGL G SG+GK+T AS ++   +VR  F  G++WL    G K RLP LM+ LA M+ E V  G  RP          +DGAAYI+E +         +C LVVAD+VWE EV+  L   G WVL ++  ++L+   E  ++ +D++ E EAE VLR+A++L            +LP  A+DL+  C      LAFVGRW  VRGRSD  AW       R  +G++   R  G   +   + R A L+AG E+LA   D+ + + LYLSLAVLP G  F    AAVLLY    SAED  +AAGV   LERW+VL            GG Y + D H+DF + +    G             ++R  AL RW   +SS++ L +     + + W  + +  G G    RPY+AALA M  S    P ++   A F    +DW EA     ++L +        G  SL    +L+ELG   + AGR
Sbjct:  198 AKLAKIPKATPIRKSWHVERLYVMERVFEALTAVGG----------------PHLVGLVGDSGSGKTTAASEIVRSNEVRQAFSDGVVWLTVNHGAKDRLPSLMLQLAHMMCEEV--GGRRPATS-------DDGAAYIKEKMQRGHGGKGLKC-LVVADNVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPET--------RLPDDAVDLIELCGRVAMDLAFVGRWSTVRGRSDRTAWSDAAGKVRAEMGKIEGERVSGTVVETRDARRKAVLQAGFEDLASGSDDERVQRLYLSLAVLPDGRGFTVKDAAVLLYDRKPSAEDEASAAGVVEILERWSVLRSIRGCYRMAWRGGHYVLHDAHSDFAREKLMDRG-------------DVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQVGGDGWKSTRPYEAALAGMEDSDPLLPTSVVAVAKFQRHEEDWEEAIATCRRLLDMPVTK---VGPYSLSVIRSLHELGLGYKHAGR 686          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4815.12701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZP3_9PHAE1.630e-16254.10NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KXU5_9PHAE2.400e-13849.08NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G5Y4_ECTSI1.490e-13648.49NB-ARC and TPR containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JL31_9PHAE4.340e-13249.54NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JK89_9PHAE4.550e-8838.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT49_ECTSI2.320e-8740.00NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5JI56_9PHAE2.060e-8640.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X0_ECTSI7.810e-7638.45TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
D7G246_ECTSI1.510e-7546.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZY7_ECTSI9.920e-6535.44NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4815contigL-elsbetiae_contig4815:9999..12758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score510.0
Seed ortholog evalue2.3e-141
Seed eggNOG ortholog2880.D7FZP7
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size2760
Cds size2760
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816472.3829396-CDS-L-elsbetiae_contig4815:9998..127581622816472.3829396-CDS-L-elsbetiae_contig4815:9998..12758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4815 9999..12758 -
1691683584.8122644-CDS-L-elsbetiae_contig4815:9998..127581691683584.8122644-CDS-L-elsbetiae_contig4815:9998..12758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4815 9999..12758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4815.12701.1prot_L-elsbetiae_contig4815.12701.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4815 9999..12758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4815.12701.1

>prot_L-elsbetiae_contig4815.12701.1 ID=prot_L-elsbetiae_contig4815.12701.1|Name=mRNA_L-elsbetiae_contig4815.12701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=920bp
QDQRRVVALANRVKVPPGAPRLRDWYVEREAVIAEACDRLGAGSGTMDSS
SSSSSSSSSEGPRMVGLAGPSGAGKSTVASMVIAREDVRTFFHSGILWLQ
AGKGVKSRLPELMIHLAGMVHETVMLGACRPPRKLGFGLDPEDGAAYIRE
VVDESSQCFLVVADDVWEVEVLEALRRAGAWVLYTSCRDDLLTEEEPVLL
RLDQVLEGEAELVLRRAADLDGEGDGDGDGVKKLPKAALDLMARCEFGVS
PLAFVGRWGVVRGRSDEKAWRTAIGRVAKARKRGDGGKKPLSWRAAALRA
GLEELARDNPQNRELYLSLAVLPRGLAFPSGVAAVLLYGNDLSAEDMEAA
AGVAATLERWTVLTLEDGGKYRVRDEHADFIQGRFCTIGAAAAAAAVTEA
DQEIRDRALSRWRGYLSSVEALLTFSSGWLVEAWDALARADGKGAPPPRP
YDAALAAMGASSADRPPALETAAYFDGRRQDWSEAYTKFSQVLLIQENSG
SGSGSSSLGTAGTLNELGACARKAGREDEAEGCYRKALSIQEQQLGVDHS
DVASTLVELGRCAEKAGRAEEAEDFYRRALLVQEERLGADHPDVATTLSS
LGGCASGAGRTREAEEHLRRALAIREKKLGVDHPDVASALYRLGVCAGKA
GKTREAQGFHRRALAIMEEKLCVDHPDLASTLYRLGECANKVDSTEEAEE
LFLRAFPVDEGLRGIDHSDVAATLNYLGERAYQSGRVEEAEEHYRQALPS
LEKKLGVDHLSVASALNNIGLCAGRAGKVEEAQDLFRRALSIRERFLGPD
HLHVANTLHCLGVGAYKAGRTAEAEGALGRALAIREKWLGAEHPSVASTL
HDLGVCVGRAGRAEETDVVFRRALSIREDKLGATHTKVADTLHELGVCAA
EAGRAGEAEECYRRALAILE
back to top

mRNA from alignment at L-elsbetiae_contig4815:9999..12758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4815.12701.1 ID=mRNA_L-elsbetiae_contig4815.12701.1|Name=mRNA_L-elsbetiae_contig4815.12701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2760bp|location=Sequence derived from alignment at L-elsbetiae_contig4815:9999..12758- (Laminarionema elsbetiae ELsaHSoW15)
CAGGATCAGCGCCGGGTCGTCGCCCTGGCGAACAGGGTGAAGGTGCCCCC CGGGGCCCCGCGGCTTCGAGACTGGTACGTCGAGCGCGAGGCAGTCATCG CCGAGGCGTGTGACCGCCTCGGAGCAGGGAGCGGCACGATGGACTCCTCC TCCTCCTCCTCCTCCTCCTCCTCCTCTGAAGGGCCGCGGATGGTCGGGTT GGCGGGGCCCAGCGGCGCGGGGAAGTCCACCGTGGCCTCGATGGTGATCG CGCGAGAAGACGTGCGGACGTTCTTCCACAGCGGGATCTTGTGGCTGCAG GCGGGGAAGGGGGTCAAGAGCCGGCTGCCCGAGCTCATGATCCACCTCGC CGGCATGGTGCACGAGACCGTGATGCTGGGGGCGTGTCGGCCGCCTCGAA AGCTGGGCTTCGGGCTCGACCCGGAGGACGGGGCGGCCTACATCCGGGAG GTGGTGGACGAGAGCAGCCAGTGCTTCCTGGTCGTGGCCGACGACGTCTG GGAGGTGGAGGTGCTGGAGGCGCTGAGGAGGGCGGGGGCGTGGGTGCTCT ACACGTCCTGCCGAGACGACTTGCTCACCGAAGAAGAACCCGTGCTCCTC CGGCTGGACCAGGTCTTGGAGGGGGAGGCGGAGCTGGTGCTGCGGCGAGC GGCCGATCTCGACGGCGAAGGCGACGGCGACGGCGACGGCGTGAAGAAGC TCCCGAAAGCCGCGCTCGACCTGATGGCGCGGTGCGAGTTCGGGGTATCA CCCCTCGCGTTCGTCGGGAGGTGGGGCGTGGTCCGCGGCAGGAGCGACGA GAAAGCGTGGCGGACCGCCATCGGGCGCGTCGCGAAGGCTCGGAAGCGAG GCGATGGCGGGAAGAAGCCCCTGTCCTGGCGAGCCGCGGCGCTGCGCGCC GGGCTGGAGGAGCTCGCTCGCGACAACCCCCAGAACAGAGAGCTGTACCT CTCCCTGGCGGTCCTGCCAAGGGGGCTGGCGTTTCCGTCGGGGGTGGCGG CGGTGCTGCTGTACGGCAACGACCTGTCGGCCGAGGACATGGAAGCGGCC GCGGGCGTCGCGGCCACCCTCGAGCGCTGGACGGTCCTGACGCTGGAGGA CGGCGGCAAGTACCGCGTCCGCGACGAGCACGCCGACTTTATTCAGGGGC GCTTCTGCACCATCGGGGCGGCGGCGGCGGCGGCGGCGGTGACAGAGGCA GACCAGGAAATTCGGGACAGGGCGCTGTCTCGGTGGCGAGGGTACCTCTC GAGCGTCGAGGCCCTCCTGACGTTCTCGAGCGGCTGGCTGGTGGAGGCGT GGGACGCCCTGGCGCGAGCCGACGGTAAAGGCGCGCCTCCCCCGCGGCCG TACGATGCGGCCTTGGCCGCAATGGGCGCCTCGAGCGCCGACCGCCCGCC GGCCCTGGAAACAGCGGCGTACTTCGACGGGCGGCGGCAGGACTGGTCGG AGGCCTACACGAAGTTCTCTCAGGTCCTGCTGATCCAGGAGAACTCCGGC AGCGGGAGTGGCAGCAGCAGCCTGGGCACGGCGGGCACCCTCAACGAGCT CGGGGCGTGCGCTAGAAAGGCCGGGAGGGAAGACGAGGCAGAGGGGTGCT ACCGGAAAGCGCTCTCGATCCAGGAGCAGCAGCTGGGGGTCGACCACTCG GACGTGGCGAGCACCCTGGTCGAGCTCGGGAGGTGCGCCGAGAAAGCGGG GAGGGCCGAGGAGGCCGAGGACTTTTATCGGCGAGCCCTCCTCGTCCAGG AGGAGAGGCTGGGAGCTGACCATCCGGACGTGGCGACCACCCTGAGCAGC CTCGGGGGGTGCGCTAGCGGCGCGGGGAGGACGCGGGAGGCCGAGGAGCA CCTGCGGCGGGCGCTGGCTATCAGGGAGAAAAAACTGGGCGTTGATCACC CGGACGTGGCAAGCGCCCTGTACAGGCTCGGGGTGTGCGCCGGCAAGGCG GGCAAGACGAGGGAGGCCCAGGGGTTCCACCGCCGAGCGCTCGCGATCAT GGAGGAGAAGCTGTGCGTCGACCACCCGGACCTGGCAAGCACCCTGTACA GGCTCGGGGAGTGCGCCAACAAGGTCGACTCGACGGAGGAGGCCGAGGAG CTATTTCTGCGAGCGTTCCCCGTCGACGAAGGCCTGCGGGGCATCGATCA CTCGGACGTGGCAGCCACCCTGAACTACCTCGGAGAGCGCGCCTACCAGT CGGGGCGGGTGGAGGAGGCCGAGGAGCACTACCGCCAAGCGCTGCCGTCT CTGGAGAAAAAGCTGGGCGTCGATCACCTGAGCGTGGCGAGCGCGCTGAA CAACATCGGGCTGTGCGCCGGCCGCGCCGGGAAGGTGGAGGAGGCCCAGG ACCTCTTTCGGCGGGCGCTCTCGATCCGGGAGAGATTCCTGGGCCCCGAT CACCTCCACGTGGCGAACACCCTGCACTGCCTCGGGGTGGGCGCGTACAA GGCCGGGAGGACGGCGGAGGCAGAGGGGGCCCTGGGGCGAGCGCTCGCTA TTCGGGAGAAGTGGCTCGGCGCCGAGCACCCGAGTGTGGCGAGCACCCTG CACGACCTCGGGGTTTGCGTCGGGAGGGCGGGGAGGGCGGAGGAGACCGA CGTGGTCTTCAGGCGCGCGCTCTCGATCCGGGAGGACAAGCTGGGCGCCA CCCACACGAAGGTGGCCGACACCCTGCACGAGCTCGGGGTCTGCGCCGCC GAGGCGGGCAGGGCGGGCGAGGCCGAGGAGTGCTACCGCCGGGCGCTCGC GATCCTGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4815:9999..12758-

>mRNA_L-elsbetiae_contig4815.12701.1 ID=mRNA_L-elsbetiae_contig4815.12701.1|Name=mRNA_L-elsbetiae_contig4815.12701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5520bp|location=Sequence derived from alignment at L-elsbetiae_contig4815:9999..12758- (Laminarionema elsbetiae ELsaHSoW15)
CAGGATCAGCGCCGGGTCGTCGCCCTGGCGAACAGGGTGAAGGTGCCCCC
CGGGGCCCCGCGGCTTCGAGACTGGTACGTCGAGCGCGAGGCAGTCATCG
CCGAGGCGTGTGACCGCCTCGGAGCAGGGAGCGGCACGATGGACTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCTGAAGGGCCGCGGATGGTCGGGTT
GGCGGGGCCCAGCGGCGCGGGGAAGTCCACCGTGGCCTCGATGGTGATCG
CGCGAGAAGACGTGCGGACGTTCTTCCACAGCGGGATCTTGTGGCTGCAG
GCGGGGAAGGGGGTCAAGAGCCGGCTGCCCGAGCTCATGATCCACCTCGC
CGGCATGGTGCACGAGACCGTGATGCTGGGGGCGTGTCGGCCGCCTCGAA
AGCTGGGCTTCGGGCTCGACCCGGAGGACGGGGCGGCCTACATCCGGGAG
GTGGTGGACGAGAGCAGCCAGTGCTTCCTGGTCGTGGCCGACGACGTCTG
GGAGGTGGAGGTGCTGGAGGCGCTGAGGAGGGCGGGGGCGTGGGTGCTCT
ACACGTCCTGCCGAGACGACTTGCTCACCGAAGAAGAACCCGTGCTCCTC
CGGCTGGACCAGGTCTTGGAGGGGGAGGCGGAGCTGGTGCTGCGGCGAGC
GGCCGATCTCGACGGCGAAGGCGACGGCGACGGCGACGGCGTGAAGAAGC
TCCCGAAAGCCGCGCTCGACCTGATGGCGCGGTGCGAGTTCGGGGTATCA
CCCCTCGCGTTCGTCGGGAGGTGGGGCGTGGTCCGCGGCAGGAGCGACGA
GAAAGCGTGGCGGACCGCCATCGGGCGCGTCGCGAAGGCTCGGAAGCGAG
GCGATGGCGGGAAGAAGCCCCTGTCCTGGCGAGCCGCGGCGCTGCGCGCC
GGGCTGGAGGAGCTCGCTCGCGACAACCCCCAGAACAGAGAGCTGTACCT
CTCCCTGGCGGTCCTGCCAAGGGGGCTGGCGTTTCCGTCGGGGGTGGCGG
CGGTGCTGCTGTACGGCAACGACCTGTCGGCCGAGGACATGGAAGCGGCC
GCGGGCGTCGCGGCCACCCTCGAGCGCTGGACGGTCCTGACGCTGGAGGA
CGGCGGCAAGTACCGCGTCCGCGACGAGCACGCCGACTTTATTCAGGGGC
GCTTCTGCACCATCGGGGCGGCGGCGGCGGCGGCGGCGGTGACAGAGGCA
GACCAGGAAATTCGGGACAGGGCGCTGTCTCGGTGGCGAGGGTACCTCTC
GAGCGTCGAGGCCCTCCTGACGTTCTCGAGCGGCTGGCTGGTGGAGGCGT
GGGACGCCCTGGCGCGAGCCGACGGTAAAGGCGCGCCTCCCCCGCGGCCG
TACGATGCGGCCTTGGCCGCAATGGGCGCCTCGAGCGCCGACCGCCCGCC
GGCCCTGGAAACAGCGGCGTACTTCGACGGGCGGCGGCAGGACTGGTCGG
AGGCCTACACGAAGTTCTCTCAGGTCCTGCTGATCCAGGAGAACTCCGGC
AGCGGGAGTGGCAGCAGCAGCCTGGGCACGGCGGGCACCCTCAACGAGCT
CGGGGCGTGCGCTAGAAAGGCCGGGAGGGAAGACGAGGCAGAGGGGTGCT
ACCGGAAAGCGCTCTCGATCCAGGAGCAGCAGCTGGGGGTCGACCACTCG
GACGTGGCGAGCACCCTGGTCGAGCTCGGGAGGTGCGCCGAGAAAGCGGG
GAGGGCCGAGGAGGCCGAGGACTTTTATCGGCGAGCCCTCCTCGTCCAGG
AGGAGAGGCTGGGAGCTGACCATCCGGACGTGGCGACCACCCTGAGCAGC
CTCGGGGGGTGCGCTAGCGGCGCGGGGAGGACGCGGGAGGCCGAGGAGCA
CCTGCGGCGGGCGCTGGCTATCAGGGAGAAAAAACTGGGCGTTGATCACC
CGGACGTGGCAAGCGCCCTGTACAGGCTCGGGGTGTGCGCCGGCAAGGCG
GGCAAGACGAGGGAGGCCCAGGGGTTCCACCGCCGAGCGCTCGCGATCAT
GGAGGAGAAGCTGTGCGTCGACCACCCGGACCTGGCAAGCACCCTGTACA
GGCTCGGGGAGTGCGCCAACAAGGTCGACTCGACGGAGGAGGCCGAGGAG
CTATTTCTGCGAGCGTTCCCCGTCGACGAAGGCCTGCGGGGCATCGATCA
CTCGGACGTGGCAGCCACCCTGAACTACCTCGGAGAGCGCGCCTACCAGT
CGGGGCGGGTGGAGGAGGCCGAGGAGCACTACCGCCAAGCGCTGCCGTCT
CTGGAGAAAAAGCTGGGCGTCGATCACCTGAGCGTGGCGAGCGCGCTGAA
CAACATCGGGCTGTGCGCCGGCCGCGCCGGGAAGGTGGAGGAGGCCCAGG
ACCTCTTTCGGCGGGCGCTCTCGATCCGGGAGAGATTCCTGGGCCCCGAT
CACCTCCACGTGGCGAACACCCTGCACTGCCTCGGGGTGGGCGCGTACAA
GGCCGGGAGGACGGCGGAGGCAGAGGGGGCCCTGGGGCGAGCGCTCGCTA
TTCGGGAGAAGTGGCTCGGCGCCGAGCACCCGAGTGTGGCGAGCACCCTG
CACGACCTCGGGGTTTGCGTCGGGAGGGCGGGGAGGGCGGAGGAGACCGA
CGTGGTCTTCAGGCGCGCGCTCTCGATCCGGGAGGACAAGCTGGGCGCCA
CCCACACGAAGGTGGCCGACACCCTGCACGAGCTCGGGGTCTGCGCCGCC
GAGGCGGGCAGGGCGGGCGAGGCCGAGGAGTGCTACCGCCGGGCGCTCGC
GATCCTGGAGCAGGATCAGCGCCGGGTCGTCGCCCTGGCGAACAGGGTGA
AGGTGCCCCCCGGGGCCCCGCGGCTTCGAGACTGGTACGTCGAGCGCGAG
GCAGTCATCGCCGAGGCGTGTGACCGCCTCGGAGCAGGGAGCGGCACGAT
GGACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGAAGGGCCGCGGA
TGGTCGGGTTGGCGGGGCCCAGCGGCGCGGGGAAGTCCACCGTGGCCTCG
ATGGTGATCGCGCGAGAAGACGTGCGGACGTTCTTCCACAGCGGGATCTT
GTGGCTGCAGGCGGGGAAGGGGGTCAAGAGCCGGCTGCCCGAGCTCATGA
TCCACCTCGCCGGCATGGTGCACGAGACCGTGATGCTGGGGGCGTGTCGG
CCGCCTCGAAAGCTGGGCTTCGGGCTCGACCCGGAGGACGGGGCGGCCTA
CATCCGGGAGGTGGTGGACGAGAGCAGCCAGTGCTTCCTGGTCGTGGCCG
ACGACGTCTGGGAGGTGGAGGTGCTGGAGGCGCTGAGGAGGGCGGGGGCG
TGGGTGCTCTACACGTCCTGCCGAGACGACTTGCTCACCGAAGAAGAACC
CGTGCTCCTCCGGCTGGACCAGGTCTTGGAGGGGGAGGCGGAGCTGGTGC
TGCGGCGAGCGGCCGATCTCGACGGCGAAGGCGACGGCGACGGCGACGGC
GTGAAGAAGCTCCCGAAAGCCGCGCTCGACCTGATGGCGCGGTGCGAGTT
CGGGGTATCACCCCTCGCGTTCGTCGGGAGGTGGGGCGTGGTCCGCGGCA
GGAGCGACGAGAAAGCGTGGCGGACCGCCATCGGGCGCGTCGCGAAGGCT
CGGAAGCGAGGCGATGGCGGGAAGAAGCCCCTGTCCTGGCGAGCCGCGGC
GCTGCGCGCCGGGCTGGAGGAGCTCGCTCGCGACAACCCCCAGAACAGAG
AGCTGTACCTCTCCCTGGCGGTCCTGCCAAGGGGGCTGGCGTTTCCGTCG
GGGGTGGCGGCGGTGCTGCTGTACGGCAACGACCTGTCGGCCGAGGACAT
GGAAGCGGCCGCGGGCGTCGCGGCCACCCTCGAGCGCTGGACGGTCCTGA
CGCTGGAGGACGGCGGCAAGTACCGCGTCCGCGACGAGCACGCCGACTTT
ATTCAGGGGCGCTTCTGCACCATCGGGGCGGCGGCGGCGGCGGCGGCGGT
GACAGAGGCAGACCAGGAAATTCGGGACAGGGCGCTGTCTCGGTGGCGAG
GGTACCTCTCGAGCGTCGAGGCCCTCCTGACGTTCTCGAGCGGCTGGCTG
GTGGAGGCGTGGGACGCCCTGGCGCGAGCCGACGGTAAAGGCGCGCCTCC
CCCGCGGCCGTACGATGCGGCCTTGGCCGCAATGGGCGCCTCGAGCGCCG
ACCGCCCGCCGGCCCTGGAAACAGCGGCGTACTTCGACGGGCGGCGGCAG
GACTGGTCGGAGGCCTACACGAAGTTCTCTCAGGTCCTGCTGATCCAGGA
GAACTCCGGCAGCGGGAGTGGCAGCAGCAGCCTGGGCACGGCGGGCACCC
TCAACGAGCTCGGGGCGTGCGCTAGAAAGGCCGGGAGGGAAGACGAGGCA
GAGGGGTGCTACCGGAAAGCGCTCTCGATCCAGGAGCAGCAGCTGGGGGT
CGACCACTCGGACGTGGCGAGCACCCTGGTCGAGCTCGGGAGGTGCGCCG
AGAAAGCGGGGAGGGCCGAGGAGGCCGAGGACTTTTATCGGCGAGCCCTC
CTCGTCCAGGAGGAGAGGCTGGGAGCTGACCATCCGGACGTGGCGACCAC
CCTGAGCAGCCTCGGGGGGTGCGCTAGCGGCGCGGGGAGGACGCGGGAGG
CCGAGGAGCACCTGCGGCGGGCGCTGGCTATCAGGGAGAAAAAACTGGGC
GTTGATCACCCGGACGTGGCAAGCGCCCTGTACAGGCTCGGGGTGTGCGC
CGGCAAGGCGGGCAAGACGAGGGAGGCCCAGGGGTTCCACCGCCGAGCGC
TCGCGATCATGGAGGAGAAGCTGTGCGTCGACCACCCGGACCTGGCAAGC
ACCCTGTACAGGCTCGGGGAGTGCGCCAACAAGGTCGACTCGACGGAGGA
GGCCGAGGAGCTATTTCTGCGAGCGTTCCCCGTCGACGAAGGCCTGCGGG
GCATCGATCACTCGGACGTGGCAGCCACCCTGAACTACCTCGGAGAGCGC
GCCTACCAGTCGGGGCGGGTGGAGGAGGCCGAGGAGCACTACCGCCAAGC
GCTGCCGTCTCTGGAGAAAAAGCTGGGCGTCGATCACCTGAGCGTGGCGA
GCGCGCTGAACAACATCGGGCTGTGCGCCGGCCGCGCCGGGAAGGTGGAG
GAGGCCCAGGACCTCTTTCGGCGGGCGCTCTCGATCCGGGAGAGATTCCT
GGGCCCCGATCACCTCCACGTGGCGAACACCCTGCACTGCCTCGGGGTGG
GCGCGTACAAGGCCGGGAGGACGGCGGAGGCAGAGGGGGCCCTGGGGCGA
GCGCTCGCTATTCGGGAGAAGTGGCTCGGCGCCGAGCACCCGAGTGTGGC
GAGCACCCTGCACGACCTCGGGGTTTGCGTCGGGAGGGCGGGGAGGGCGG
AGGAGACCGACGTGGTCTTCAGGCGCGCGCTCTCGATCCGGGAGGACAAG
CTGGGCGCCACCCACACGAAGGTGGCCGACACCCTGCACGAGCTCGGGGT
CTGCGCCGCCGAGGCGGGCAGGGCGGGCGAGGCCGAGGAGTGCTACCGCC
GGGCGCTCGCGATCCTGGAG
back to top