mRNA_L-elsbetiae_contig4814.12699.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4814.12699.1
Unique NamemRNA_L-elsbetiae_contig4814.12699.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4814.12699.1 vs. uniprot
Match: D7FRL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL8_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 2.990e-139
Identity = 306/539 (56.77%), Postives = 343/539 (63.64%), Query Frame = 1 
Query:    1 VTASSFRGTVQASTTRDTSFRVVWRGDAFTTPQDAPSTTMLSQGWSSPKGRGGGRRRSHHPGPVLSQDDELAVSREEACALAAWAKREYPSVTSAER-RG----------------QQAATAG--------------------ESDAA-RPGSLGSVREGVETTVRACVLEASEVERLWLWESAGGKRRKDLVSRATALLTDGLHDMTLQLWGDMASDNTIQSLREGSIAAARG---ARDGAMKQPAVFEFTRLQPSFSFSCEALVLNGKSGAVKRMEIDSAEAISVSASVLAXXXXXXXXXXXXXXXXXXGPAEHDRVAHQRVHAGKSLRAETVRFFAEEGGPATARRFESVAALMSAGGFSGAGYLSDVVVRKVDAPSLAAPGTVPDPGCH--RGSRPANSRLPPPPRPGADPTLTMYLGDPDEVGPARGA--ARSAGVGGGVLRVTVGGGARRDLLGCIPEELLVPPAGGHTGADAVADAGRTVAKSLLDGLEVGGGRGERVDVVLACSAAVDANERVVSGGTRYRLVSLQPNYFS 1482
            V  SSFRGTVQA +TR TSFRVVWRGDAFTTPQ+APSTTML QG   P        RS      LSQ  +L+VSRE ACALAAWAK E+PSVTS E  RG                + A  AG                      DAA RPGSLG+VR GVETTVRACV+E SEVERLW+W+ AGGKRRKDLVSRATALLTDG H+MTLQLWGDMASD TI SLR   I A +    ARDGAM++PAVFEFTRLQPSFSFSCEALVLNGKSG    M+  SAEA+        XXXXXXXXXXXXXXXXXX        A        S  A+        G PA+ARRFESVAALMSA GFSGAGYL++VV+RKV AP L+A G    PG H    S P+   + PP        + +Y GDPDE  PA  A  ARSAGV   VL VT  GGA  +LLG +P +LL   +G  +      D GR V + LLDGLEVGG RGERVDV LACSA+ D N R++ GG+ YRL+SL P Y S
Sbjct:  167 VGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASE-----RS-----ALSQGGDLSVSREAACALAAWAKTEFPSVTSPEPPRGXXXXXXXXXXXQDLWNRHATAAGVLPSVEEAEGAXXXXXXXXXXXDAAFRPGSLGAVRNGVETTVRACVVEVSEVERLWIWKYAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRVITAGKNGVSARDGAMERPAVFEFTRLQPSFSFSCEALVLNGKSGTATHMDRGSAEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSCA-----GAPSFLAQGA------GAPASARRFESVAALMSADGFSGAGYLANVVIRKVCAPWLSAAGP---PGEHGRTASLPSLGSVAPP--------VVIYFGDPDEPVPAAAAGDARSAGVEA-VLGVTADGGALHELLGGVPLDLLAVGSGSSSRGGMAGDVGRRVVQCLLDGLEVGGRRGERVDVALACSASADENGRLIPGGSSYRLISLLPRYES 672
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BLAST of mRNA_L-elsbetiae_contig4814.12699.1 vs. uniprot
Match: A0A6H5KGT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT9_9PHAE)

HSP 1 Score: 420 bits (1080), Expect = 2.740e-137
Identity = 292/534 (54.68%), Postives = 334/534 (62.55%), Query Frame = 1 
Query:   10 SSFRGTVQASTTRDTSFRVVWRGDAFTTPQDAPSTTMLSQGWSSPKGRGGGRRRSHHPGPVLSQDDELAVSREEACALAAWAKREYPSVTSAE-----------------------------RRGQQAATAGESDAA-----RPGSLGSVREGVETTVRACVLEASEVERLWLWESAGGKRRKDLVSRATALLTDGLHDMTLQLWGDMASDNTIQSLREGSIAAARG---ARDGAMKQPAVFEFTRLQPSFSFSCEALVLNGKSGAVKRMEIDSAEAISVSASVLAXXXXXXXXXXXXXXXXXXGPAEHDRVAHQRVHAGKSLRAETVRFFAE-EGGPATARRFESVAALMSAGGFSGAGYLSDVVVRKVDAPSLAAPGTVPDPGCHRGSRPANSRLPPPPRPGADPTLTMYLGDPDEVGPARGAAR-------SAGVGGGVLRVTVGGGARRDLLGCIPEELLVPPAGGHTGADAVADAGRTVAKSLLDGLEVGGGRGERVDVVLACSAAVDANERVVSGGTRYRLVSLQPNY 1476
            SSF+GTVQA +TR TSFRVVWRGDAFTTPQ+APSTTML  G   P        RS      LSQ  +LAVSRE ACALAAWAK E+PS+TS E                               G   A +G++ AA     RPGSLG+ R GV TTVRACV+E SEVERLW+WESAGGKRRKDLVSRATALLTDG H+MTLQLWGDMASD TI SLR  +IAA +    A D  M++PAVFEFTRLQPSFSFSCE LVLNGKSG V +M+  SAEA+S       XXXXXXXXXX             D  A   +   KS  A +  F A+  G PA+ARRFESVAALMSA GFSGAGYL +VVVRKV AP L+A G+ PD      S P+   + PP        + +YLGD DE  PA  AA        SAGV   V+ VT  GGA  +LLG +P +LL   +G  +      D GR V + LLDGLEVGG RGERVDV LACSA+ D N R + GG+ YRL+SL P Y
Sbjct:  171 SSFQGTVQACSTRKTSFRVVWRGDAFTTPQEAPSTTMLPLGRPPPASE-----RS-----PLSQGGDLAVSREAACALAAWAKTEFPSITSPEPPRGXXXXXXXQHLCNRHAAAPGVSPLMEEEGGVGADSGDAAAAGDAAFRPGSLGAARNGVGTTVRACVVEVSEVERLWMWESAGGKRRKDLVSRATALLTDGRHEMTLQLWGDMASDETIDSLRGRAIAAGKNDVSAHDRTMERPAVFEFTRLQPSFSFSCETLVLNGKSGTVTQMDRGSAEAVSXXXXXXXXXXXXXXXXX-------------DERAPVSLATAKSSCAGSPSFLAQGAGAPASARRFESVAALMSADGFSGAGYLDNVVVRKVCAPWLSAAGS-PDEHGRAASLPSLGGVAPP--------VVIYLGDLDEPVPAAAAAAAGTCDAWSAGVEA-VVGVTADGGALHELLGGVPLDLLAVGSGRGSRRGMAGDVGRGVVQCLLDGLEVGGRRGERVDVALACSASADENGRFIPGGSSYRLISLLPKY 671
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4814.12699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRL8_ECTSI2.990e-13956.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGT9_9PHAE2.740e-13754.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4814contigL-elsbetiae_contig4814:11305..13344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-12_002560.1
Exons2
Model size1482
Cds size1482
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816472.3113656-CDS-L-elsbetiae_contig4814:11304..123441622816472.3113656-CDS-L-elsbetiae_contig4814:11304..12344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4814 11305..12344 -
1691683584.7798266-CDS-L-elsbetiae_contig4814:11304..123441691683584.7798266-CDS-L-elsbetiae_contig4814:11304..12344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4814 11305..12344 -
1622816472.323649-CDS-L-elsbetiae_contig4814:12902..133441622816472.323649-CDS-L-elsbetiae_contig4814:12902..13344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4814 12903..13344 -
1691683584.792827-CDS-L-elsbetiae_contig4814:12902..133441691683584.792827-CDS-L-elsbetiae_contig4814:12902..13344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4814 12903..13344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4814.12699.1prot_L-elsbetiae_contig4814.12699.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4814 11305..13344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4814.12699.1

>prot_L-elsbetiae_contig4814.12699.1 ID=prot_L-elsbetiae_contig4814.12699.1|Name=mRNA_L-elsbetiae_contig4814.12699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=494bp
VTASSFRGTVQASTTRDTSFRVVWRGDAFTTPQDAPSTTMLSQGWSSPKG
RGGGRRRSHHPGPVLSQDDELAVSREEACALAAWAKREYPSVTSAERRGQ
QAATAGESDAARPGSLGSVREGVETTVRACVLEASEVERLWLWESAGGKR
RKDLVSRATALLTDGLHDMTLQLWGDMASDNTIQSLREGSIAAARGARDG
AMKQPAVFEFTRLQPSFSFSCEALVLNGKSGAVKRMEIDSAEAISVSASV
LAAAAAAAAAVTPAAAAAAAGPAEHDRVAHQRVHAGKSLRAETVRFFAEE
GGPATARRFESVAALMSAGGFSGAGYLSDVVVRKVDAPSLAAPGTVPDPG
CHRGSRPANSRLPPPPRPGADPTLTMYLGDPDEVGPARGAARSAGVGGGV
LRVTVGGGARRDLLGCIPEELLVPPAGGHTGADAVADAGRTVAKSLLDGL
EVGGGRGERVDVVLACSAAVDANERVVSGGTRYRLVSLQPNYFS
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mRNA from alignment at L-elsbetiae_contig4814:11305..13344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4814.12699.1 ID=mRNA_L-elsbetiae_contig4814.12699.1|Name=mRNA_L-elsbetiae_contig4814.12699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2040bp|location=Sequence derived from alignment at L-elsbetiae_contig4814:11305..13344- (Laminarionema elsbetiae ELsaHSoW15)
GTCACCGCCAGCTCGTTTCGAGGCACCGTCCAGGCGAGCACCACCCGAGA
CACCAGCTTTCGGGTGGTCTGGCGAGGGGACGCCTTCACCACGCCCCAGG
ACGCCCCCAGCACCACCATGCTCTCCCAGGGCTGGTCGTCGCCAAAGGGC
CGCGGGGGGGGGCGCCGACGATCCCACCACCCCGGCCCCGTTCTCTCACA
AGACGACGAACTCGCAGTGTCGCGGGAAGAGGCCTGCGCGCTGGCCGCCT
GGGCCAAGCGTGAGTATCCTTCCGTGACTTCTGCGGAAAGGCGTGGGCAG
CAAGCCGCCACGGCGGGGGAGAGTGATGCTGCCCGTCCCGGATCCTTGGG
GTCCGTGAGGGAGGGGGTGGAGACTACCGTGCGTGCGTGCGTGCTTGAGG
CTTCGGAGGTGGAGCGATTGTGGTTGTGGGAATCCGCGGGAGGTACGCAG
GAGAGGTGGAAAAGGTGTAGTTGCTGCCATTGCGGCTCTACCTGTAGAGG
TGTGATGCGGAGTAATTTAGCGGCGTTTTGGGCTGGTGCCGAGCCTGTTC
GTTCTGCGTGCGAGCTCAAGCCTACTGTCCGGTTAAGTAGCCGCATGGAT
GGCTTGGTTCGTCGGTGGGCCCGTGGAAGCCGTTTTTTTTGGCTGTCGTT
GTCGGCTCGTCGTCGTCGTCGCCGCCATCGTTTTGATGAGCAAGAGAGTA
AGAAGGCGGAACGTTGCACGCACGCCCGCACTACTTTTGTGTTTTGTGGT
GTCGGAGGAAAAATTAAGCGCTGTTGCAGTTCGGTGCGTGAAATTCCCCG
CCACTACCGGTTGTACTCCAGAGTATCTCCTTTGCAAGAAAATAGATGGT
CTTCTTACTTGACCATTGCGCTGCGTGGTTAGTTGGCGTTTTAGCTCTCT
CTTTCTCTCTCCTCTCTGGCCGACAAACGGAACCCAGAGCAAACCATGGC
CGCGCTGTGAGAGAAAAATCCACGCCCTTGCTCGGTGCCTGCCGCTGCAG
GGAAACGCCGCAAGGATCTCGTCTCGCGCGCCACCGCCTTGCTAACTGAC
GGCCTGCACGATATGACACTTCAGCTTTGGGGCGACATGGCGTCCGACAA
CACTATCCAAAGCTTGAGAGAAGGATCGATCGCCGCCGCCAGGGGCGCTC
GAGACGGAGCGATGAAGCAGCCGGCGGTTTTCGAGTTCACCCGCCTGCAG
CCGTCCTTCAGCTTCTCCTGCGAGGCCCTGGTCCTCAACGGGAAGAGCGG
CGCCGTGAAGAGGATGGAGATCGACTCAGCAGAGGCGATTTCCGTGTCAG
CGTCGGTTCTAGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTACTCCTGCG
GCGGCGGCGGCGGCGGCGGGTCCTGCTGAGCATGACAGGGTAGCCCACCA
GAGAGTCCATGCCGGCAAGAGTCTGCGCGCGGAAACCGTACGGTTTTTCG
CGGAAGAGGGGGGACCCGCGACCGCCCGAAGGTTTGAGTCCGTTGCCGCG
CTGATGAGCGCCGGCGGTTTCTCGGGAGCGGGCTATCTCAGCGACGTCGT
GGTTCGAAAAGTCGACGCCCCGTCCTTGGCGGCTCCCGGGACTGTCCCAG
ACCCGGGTTGTCACCGTGGGAGCCGCCCAGCAAACAGCCGACTCCCGCCG
CCGCCGCGCCCCGGGGCTGACCCAACCTTGACGATGTACTTGGGCGACCC
GGACGAGGTTGGGCCGGCGAGGGGTGCAGCCCGATCGGCCGGCGTTGGGG
GGGGGGTCTTGCGTGTCACTGTCGGCGGAGGGGCCCGGCGCGACCTACTG
GGCTGCATTCCCGAGGAGCTTCTCGTGCCGCCGGCGGGCGGGCACACCGG
GGCTGACGCGGTTGCCGATGCCGGCAGGACGGTGGCGAAGAGCCTTCTCG
ATGGGTTGGAGGTCGGGGGGGGGCGAGGGGAGCGGGTGGACGTGGTGCTG
GCTTGCTCGGCGGCTGTGGACGCCAACGAGCGAGTGGTTTCTGGGGGGAC
TCGTTATCGCCTCGTGAGCCTTCAGCCGAACTACTTTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4814:11305..13344-

>mRNA_L-elsbetiae_contig4814.12699.1 ID=mRNA_L-elsbetiae_contig4814.12699.1|Name=mRNA_L-elsbetiae_contig4814.12699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2964bp|location=Sequence derived from alignment at L-elsbetiae_contig4814:11305..13344- (Laminarionema elsbetiae ELsaHSoW15)
GTCACCGCCAGCTCGTTTCGAGGCACCGTCCAGGCGAGCACCACCCGAGA
CACCAGCTTTCGGGTGGTCTGGCGAGGGGACGCCTTCACCACGCCCCAGG
ACGCCCCCAGCACCACCATGCTCTCCCAGGGCTGGTCGTCGCCAAAGGGC
CGCGGGGGGGGGCGCCGACGATCCCACCACCCCGGCCCCGTTCTCTCACA
AGACGACGAACTCGCAGTGTCGCGGGAAGAGGCCTGCGCGCTGGCCGCCT
GGGCCAAGCGTGAGTATCCTTCCGTGACTTCTGCGGAAAGGCGTGGGCAG
CAAGCCGCCACGGCGGGGGAGAGTGATGCTGCCCGTCCCGGATCCTTGGG
GTCCGTGAGGGAGGGGGTGGAGACTACCGTGCGTGCGTGCGTGCTTGAGG
CTTCGGAGGTGGAGCGATTGTGGTTGTGGGAATCCGCGGGAGGTCACCGC
CAGCTCGTTTCGAGGCACCGTCCAGGCGAGCACCACCCGAGACACCAGCT
TTCGGGTGGTCTGGCGAGGGGACGCCTTCACCACGCCCCAGGACGCCCCC
AGCACCACCATGCTCTCCCAGGGCTGGTCGTCGCCAAAGGGCCGCGGGGG
GGGGCGCCGACGATCCCACCACCCCGGCCCCGTTCTCTCACAAGACGACG
AACTCGCAGTGTCGCGGGAAGAGGCCTGCGCGCTGGCCGCCTGGGCCAAG
CGTGAGTATCCTTCCGTGACTTCTGCGGAAAGGCGTGGGCAGCAAGCCGC
CACGGCGGGGGAGAGTGATGCTGCCCGTCCCGGATCCTTGGGGTCCGTGA
GGGAGGGGGTGGAGACTACCGTGCGTGCGTGCGTGCTTGAGGCTTCGGAG
GTGGAGCGATTGTGGTTGTGGGAATCCGCGGGAGGGAAACGCCGCAAGGA
TCTCGTCTCGCGCGCCACCGCCTTGCTAACTGACGGCCTGCACGATATGA
CACTTCAGCTTTGGGGCGACATGGCGTCCGACAACACTATCCAAAGCTTG
AGAGAAGGATCGATCGCCGCCGCCAGGGGCGCTCGAGACGGAGCGATGAA
GCAGCCGGCGGTTTTCGAGTTCACCCGCCTGCAGCCGTCCTTCAGCTTCT
CCTGCGAGGCCCTGGTCCTCAACGGGAAGAGCGGCGCCGTGAAGAGGATG
GAGATCGACTCAGCAGAGGCGATTTCCGTGTCAGCGTCGGTTCTAGCTGC
TGCTGCTGCTGCTGCTGCTGCTGTTACTCCTGCGGCGGCGGCGGCGGCGG
CGGGTCCTGCTGAGCATGACAGGGTAGCCCACCAGAGAGTCCATGCCGGC
AAGAGTCTGCGCGCGGAAACCGTACGGTTTTTCGCGGAAGAGGGGGGACC
CGCGACCGCCCGAAGGTTTGAGTCCGTTGCCGCGCTGATGAGCGCCGGCG
GTTTCTCGGGAGCGGGCTATCTCAGCGACGTCGTGGTTCGAAAAGTCGAC
GCCCCGTCCTTGGCGGCTCCCGGGACTGTCCCAGACCCGGGTTGTCACCG
TGGGAGCCGCCCAGCAAACAGCCGACTCCCGCCGCCGCCGCGCCCCGGGG
CTGACCCAACCTTGACGATGTACTTGGGCGACCCGGACGAGGTTGGGCCG
GCGAGGGGTGCAGCCCGATCGGCCGGCGTTGGGGGGGGGGTCTTGCGTGT
CACTGTCGGCGGAGGGGCCCGGCGCGACCTACTGGGCTGCATTCCCGAGG
AGCTTCTCGTGCCGCCGGCGGGCGGGCACACCGGGGCTGACGCGGTTGCC
GATGCCGGCAGGACGGTGGCGAAGAGCCTTCTCGATGGGTTGGAGGTCGG
GGGGGGGCGAGGGGAGCGGGTGGACGTGGTGCTGGCTTGCTCGGCGGCTG
TGGACGCCAACGAGCGAGTGGTTTCTGGGGGGACTCGTTATCGCCTCGTG
AGCCTTCAGCCGAACTACTTTTCGGGAAACGCCGCAAGGATCTCGTCTCG
CGCGCCACCGCCTTGCTAACTGACGGCCTGCACGATATGACACTTCAGCT
TTGGGGCGACATGGCGTCCGACAACACTATCCAAAGCTTGAGAGAAGGAT
CGATCGCCGCCGCCAGGGGCGCTCGAGACGGAGCGATGAAGCAGCCGGCG
GTTTTCGAGTTCACCCGCCTGCAGCCGTCCTTCAGCTTCTCCTGCGAGGC
CCTGGTCCTCAACGGGAAGAGCGGCGCCGTGAAGAGGATGGAGATCGACT
CAGCAGAGGCGATTTCCGTGTCAGCGTCGGTTCTAGCTGCTGCTGCTGCT
GCTGCTGCTGCTGTTACTCCTGCGGCGGCGGCGGCGGCGGCGGGTCCTGC
TGAGCATGACAGGGTAGCCCACCAGAGAGTCCATGCCGGCAAGAGTCTGC
GCGCGGAAACCGTACGGTTTTTCGCGGAAGAGGGGGGACCCGCGACCGCC
CGAAGGTTTGAGTCCGTTGCCGCGCTGATGAGCGCCGGCGGTTTCTCGGG
AGCGGGCTATCTCAGCGACGTCGTGGTTCGAAAAGTCGACGCCCCGTCCT
TGGCGGCTCCCGGGACTGTCCCAGACCCGGGTTGTCACCGTGGGAGCCGC
CCAGCAAACAGCCGACTCCCGCCGCCGCCGCGCCCCGGGGCTGACCCAAC
CTTGACGATGTACTTGGGCGACCCGGACGAGGTTGGGCCGGCGAGGGGTG
CAGCCCGATCGGCCGGCGTTGGGGGGGGGGTCTTGCGTGTCACTGTCGGC
GGAGGGGCCCGGCGCGACCTACTGGGCTGCATTCCCGAGGAGCTTCTCGT
GCCGCCGGCGGGCGGGCACACCGGGGCTGACGCGGTTGCCGATGCCGGCA
GGACGGTGGCGAAGAGCCTTCTCGATGGGTTGGAGGTCGGGGGGGGGCGA
GGGGAGCGGGTGGACGTGGTGCTGGCTTGCTCGGCGGCTGTGGACGCCAA
CGAGCGAGTGGTTTCTGGGGGGACTCGTTATCGCCTCGTGAGCCTTCAGC
CGAACTACTTTTCG
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