mRNA_L-elsbetiae_contig4813.12697.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4813.12697.1
Unique NamemRNA_L-elsbetiae_contig4813.12697.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4813.12697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4813contigL-elsbetiae_contig4813:10479..13290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1669
Cds size978
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4813.12697.1prot_L-elsbetiae_contig4813.12697.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4813 10526..12646 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816471.9383972-UTR-L-elsbetiae_contig4813:10478..105251622816471.9383972-UTR-L-elsbetiae_contig4813:10478..10525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4813 10479..10525 +
1691683584.522004-UTR-L-elsbetiae_contig4813:10478..105251691683584.522004-UTR-L-elsbetiae_contig4813:10478..10525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4813 10479..10525 +
1622816471.9708507-UTR-L-elsbetiae_contig4813:12646..132901622816471.9708507-UTR-L-elsbetiae_contig4813:12646..13290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4813 12647..13290 +
1691683584.5507495-UTR-L-elsbetiae_contig4813:12646..132901691683584.5507495-UTR-L-elsbetiae_contig4813:12646..13290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4813 12647..13290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816471.9492826-CDS-L-elsbetiae_contig4813:10525..114351622816471.9492826-CDS-L-elsbetiae_contig4813:10525..11435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4813 10526..11435 +
1691683584.5314429-CDS-L-elsbetiae_contig4813:10525..114351691683584.5314429-CDS-L-elsbetiae_contig4813:10525..11435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4813 10526..11435 +
1622816471.9608045-CDS-L-elsbetiae_contig4813:12578..126461622816471.9608045-CDS-L-elsbetiae_contig4813:12578..12646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4813 12579..12646 +
1691683584.5408337-CDS-L-elsbetiae_contig4813:12578..126461691683584.5408337-CDS-L-elsbetiae_contig4813:12578..12646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4813 12579..12646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4813.12697.1

>prot_L-elsbetiae_contig4813.12697.1 ID=prot_L-elsbetiae_contig4813.12697.1|Name=mRNA_L-elsbetiae_contig4813.12697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=326bp
MPRKCCHHGCTKQPSYGKAGGKAEYCRDHAKDGMLDVKLKKRCTHHGCTK
QPSYGKAGSKAEYCRDHAEDGMLDVKNKKRCTHHGCTKRPSYGKAGSKTG
YCRDHAKDGMLNVKDKTCTHHGCTKRPSYGKAGGKAEYCRDHAEGGMANV
ASKRCAIPGCTTRASYGDENTGTREFCAPHAEEGMVCLSGRSRGDSKRSD
STDDSGARGSGTASRAGSGEKRRSRAPSPPPAVEASSGRSSETNKRAHRS
AGDGDLDPVRVKREGVDSRVADDEETRACPEPKGVVKTEDLDVSCKVEPA
EGAGDATQARMKWRRTTGGGQPRCS*
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mRNA from alignment at L-elsbetiae_contig4813:10479..13290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4813.12697.1 ID=mRNA_L-elsbetiae_contig4813.12697.1|Name=mRNA_L-elsbetiae_contig4813.12697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2812bp|location=Sequence derived from alignment at L-elsbetiae_contig4813:10479..13290+ (Laminarionema elsbetiae ELsaHSoW15)
TCAATTCACTCTCTTTGCAGGAGTAGAGAACCGACTGAACGGAAAGGATG
CCTCGGAAGTGTTGTCACCACGGCTGCACCAAGCAGCCGTCGTACGGCAA
GGCCGGCGGTAAGGCGGAGTACTGCCGTGACCATGCCAAGGACGGGATGC
TGGACGTGAAGCTCAAGAAGAGATGCACCCACCACGGCTGCACCAAGCAG
CCGTCGTACGGTAAGGCCGGCAGCAAGGCGGAGTACTGCCGTGACCATGC
CGAGGACGGGATGCTGGACGTGAAGAACAAGAAGAGATGCACCCACCACG
GCTGTACCAAGCGGCCGTCATACGGCAAGGCCGGCAGCAAGACGGGGTAC
TGCCGTGACCATGCCAAGGACGGGATGCTGAACGTGAAGGATAAGACATG
CACCCACCACGGCTGTACTAAGCGGCCGTCATACGGTAAGGCCGGCGGCA
AGGCGGAGTACTGCCGTGACCATGCCGAGGGCGGGATGGCGAACGTGGCC
AGCAAGAGATGTGCCATTCCTGGATGCACCACAAGGGCCAGCTACGGCGA
CGAAAACACCGGCACCCGGGAGTTCTGCGCACCACACGCAGAAGAAGGCA
TGGTCTGTCTTTCTGGCCGGTCCAGGGGGGACAGCAAAAGAAGTGACAGT
ACCGATGATTCGGGCGCAAGGGGTAGTGGCACCGCTAGCCGTGCTGGCTC
CGGTGAAAAGCGGAGGAGCCGCGCTCCCTCGCCCCCCCCGGCGGTGGAGG
CTTCCTCAGGAAGGAGCAGTGAGACCAACAAACGAGCCCACCGGAGTGCT
GGCGATGGGGACTTAGATCCGGTTCGGGTGAAAAGAGAGGGGGTTGACAG
CAGGGTGGCCGACGACGAGGAAACTAGAGCATGTCCTGAGCCCAAGGGTG
TGGTGAAGACGGAAGACCTGGACGTTTCCTGCAAAGTGGAACCCGCGGAA
GGTGCAGGTGCGATTCAAACGTGTCAAGTCTAGGCGGCCATCGCGACATC
ATGGCATGTTCGTTGCCGGTGTTTTCTTGTGTAAGCGTGGCAGTTGGCGG
CTTTATCTAGATGTGTTCGACCGGATGAGAATGGACACCGGGTTATTGTT
GAGCAGCAGTGTTGGAAGTCTCACCTCGGCTGCCGGAAGTATCCGTTTCG
TCAATATGGTTACGACGTTGTTTTGCACCGAAGTGGATCTAAACGATCTG
TTTGGTGGCCCAGAGGGTAGGTGTACTCAACTCGGTTTTTAACCTAAAGA
AGGAGATCTCCAAGGTGTCCCATCTTGATTGATTCTAGCGATATTTTAAA
CAGGCTGCCCTGGACACAGAATCGGTTTCTACGCAACAATCTTGGGCATA
CATTTATCAAGATACCGGGCGCCTGTCGTGGCTAGTTCAACGACAACACT
CCCCGACCCACCAAAGTGCTTTGAGGGCGTAGATTCCGCGATAAGAATGC
GTGAAAGCGACTTTTTGATGATCGAAGCTGTCGAGGAGATGCCTTGCTAA
CGAACAGCTTTAGTTTCTGTGCGTACAGCGGAACGTTGTATCTATGAGTG
TACGCACATTGCATGCATTCGCTTGGTTGTACTGGTGCCAGGGCTCGTGT
CTTCAATTATTTTTTTCGATCGGCGACCGCCGAGATATCACATCATGTCA
ACATTCAAACCCTTCGGTGGGAAATTGTGTTGGGGAAGAAGCAGGGAATA
CTGCTGCTGTTCCAATGAGAGACAGCATGTGGCTCCTTGGTGTGCTTTTC
ACAGCAGTGGTTGGTCCGTTGTGGCTTGTGTTTTCCTAGGTTTGCCCTAC
CTCGCCCTGTTTTCCCGAGATCTCTCGCCGTCCGCGGTCCGAGGTGGTTT
CGTTCCACCTGGCTCTGCTCGGAAGACAATGATTTCCCAAATGCCCACAT
ATTTAACATGAAGGCGACAAAGATGTATCGCGATCGTGTTGTCGCGTAAC
TCATCCCAATGACAAGCAACCGCCAGCCCCCAACGATCTCCTTTGCTCTC
TTTTGTACATGACCCAGTGTCGTTCTGTTGGTTGCGTATCATCGCTCTCT
GGCGTATGCGTCTCATGTCCCCCCTTCCCTCCTCCAATCCAAACACACAG
GCGATGCTACACAAGCGAGGATGAAGTGGAGAAGGACCACGGGAGGGGGG
CAGCCGCGATGCTCCTGAATCCTGACATCGCCCTTTTGTAGCACCGGTAG
CAACACGCCGAGGTAGTGCTATCGTCGGCGGGTCGTGACGACATTTGTGC
GAGGCGGCCACGTACGGCTGCGGTATAGCGAGGCCGCCACCAACTGCGCA
CGGGGTGCCAGGGTTGTTGTACTGCTGTACTCGTCTGGCTCTTGTGTGGG
CGGGCGCCGTTTGTCGTTGCAGCTCTGCTGGCCTCGACAGGGTCGAGTAA
ATGGGTTTCTATTTTTTTTTGGTTTGGATTGGACTCATTCGAGCCCTCTT
CCCCCTTCCGAATGCCGACGGCCTCTTGTTCCGCGGCCTTTGCCCATATA
TATGCTGTGGCCTAATAAGGTGAAGGTAGGTCCGCGGGAGGTAGGCTTTA
CGTCGGCCGCTCTGCAGGTGCCATACGTGTTTTGCTGTATATGTGTCGGT
GGTGTGCGGCACGGGCAAAGACTTGCGACTGCGGTGTTTATGTAGTGGCA
TTGGCTACAAGTCATGAGGAGCATGAGGCCGCTTCCTCTACCACTCGAAA
TGGACCCCTCCCTTGGGTCTAGTCTACCCGTCGCTGCTGAGAGACCTTTT
TGATAAAGGCTCTCGCTCGAAAACGATAAAACGATGGTGCGCGAAACTTT
GGCACGAGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4813:10479..13290+

>mRNA_L-elsbetiae_contig4813.12697.1 ID=mRNA_L-elsbetiae_contig4813.12697.1|Name=mRNA_L-elsbetiae_contig4813.12697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1956bp|location=Sequence derived from alignment at L-elsbetiae_contig4813:10479..13290+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCGGAAGTGTTGTCACCACGGCTGCACCAAGCAGCCGTCGTACGG
CAAGGCCGGCGGTAAGGCGGAGTACTGCCGTGACCATGCCAAGGACGGGA
TGCTGGACGTGAAGCTCAAGAAGAGATGCACCCACCACGGCTGCACCAAG
CAGCCGTCGTACGGTAAGGCCGGCAGCAAGGCGGAGTACTGCCGTGACCA
TGCCGAGGACGGGATGCTGGACGTGAAGAACAAGAAGAGATGCACCCACC
ACGGCTGTACCAAGCGGCCGTCATACGGCAAGGCCGGCAGCAAGACGGGG
TACTGCCGTGACCATGCCAAGGACGGGATGCTGAACGTGAAGGATAAGAC
ATGCACCCACCACGGCTGTACTAAGCGGCCGTCATACGGTAAGGCCGGCG
GCAAGGCGGAGTACTGCCGTGACCATGCCGAGGGCGGGATGGCGAACGTG
GCCAGCAAGAGATGTGCCATTCCTGGATGCACCACAAGGGCCAGCTACGG
CGACGAAAACACCGGCACCCGGGAGTTCTGCGCACCACACGCAGAAGAAG
GCATGGTCTGTCTTTCTGGCCGGTCCAGGGGGGACAGCAAAAGAAGTGAC
AGTACCGATGATTCGGGCGCAAGGGGTAGTGGCACCGCTAGCCGTGCTGG
CTCCGGTGAAAAGCGGAGGAGCCGCGCTCCCTCGCCCCCCCCGGCGGTGG
AGGCTTCCTCAGGAAGGAGCAGTGAGACCAACAAACGAGCCCACCGGAGT
GCTGGCGATGGGGACTTAGATCCGGTTCGGGTGAAAAGAGAGGGGGTTGA
CAGCAGGGTGGCCGACGACGAGGAAACTAGAGCATGTCCTGAGCCCAAGG
GTGTGGTGAAGACGGAAGACCTGGACGTTTCCTGCAAAGTGGAACCCGCG
GAAGGTGCAGATGCCTCGGAAGTGTTGTCACCACGGCTGCACCAAGCAGC
CGTCGTACGGCAAGGCCGGCGGTAAGGCGGAGTACTGCCGTGACCATGCC
AAGGACGGGATGCTGGACGTGAAGCTCAAGAAGAGATGCACCCACCACGG
CTGCACCAAGCAGCCGTCGTACGGTAAGGCCGGCAGCAAGGCGGAGTACT
GCCGTGACCATGCCGAGGACGGGATGCTGGACGTGAAGAACAAGAAGAGA
TGCACCCACCACGGCTGTACCAAGCGGCCGTCATACGGCAAGGCCGGCAG
CAAGACGGGGTACTGCCGTGACCATGCCAAGGACGGGATGCTGAACGTGA
AGGATAAGACATGCACCCACCACGGCTGTACTAAGCGGCCGTCATACGGT
AAGGCCGGCGGCAAGGCGGAGTACTGCCGTGACCATGCCGAGGGCGGGAT
GGCGAACGTGGCCAGCAAGAGATGTGCCATTCCTGGATGCACCACAAGGG
CCAGCTACGGCGACGAAAACACCGGCACCCGGGAGTTCTGCGCACCACAC
GCAGAAGAAGGCATGGTCTGTCTTTCTGGCCGGTCCAGGGGGGACAGCAA
AAGAAGTGACAGTACCGATGATTCGGGCGCAAGGGGTAGTGGCACCGCTA
GCCGTGCTGGCTCCGGTGAAAAGCGGAGGAGCCGCGCTCCCTCGCCCCCC
CCGGCGGTGGAGGCTTCCTCAGGAAGGAGCAGTGAGACCAACAAACGAGC
CCACCGGAGTGCTGGCGATGGGGACTTAGATCCGGTTCGGGTGAAAAGAG
AGGGGGTTGACAGCAGGGTGGCCGACGACGAGGAAACTAGAGCATGTCCT
GAGCCCAAGGGTGTGGTGAAGACGGAAGACCTGGACGTTTCCTGCAAAGT
GGAACCCGCGGAAGGTGCAGGCGATGCTACACAAGCGAGGATGAAGTGGA
GAAGGACCACGGGAGGGGGGCAGCCGCGATGCTCCTGAGCGATGCTACAC
AAGCGAGGATGAAGTGGAGAAGGACCACGGGAGGGGGGCAGCCGCGATGC
TCCTGA
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