mRNA_L-elsbetiae_contig48.12672.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig48.12672.1
Unique NamemRNA_L-elsbetiae_contig48.12672.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig48.12672.1 vs. uniprot
Match: D7FQC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC6_ECTSI)

HSP 1 Score: 603 bits (1554), Expect = 4.450e-206
Identity = 402/686 (58.60%), Postives = 469/686 (68.37%), Query Frame = 3
Query:   72 GSTKDLDPFLSKESLDSLARMGFGKRRPRLGPHRYHGIAARTRLSVAGKSTMVSTSEQRRQHHKERVTINQVNDLAEITREIDGFTKVGQRVPAAVWEKYDRINKRHKKHEDMLAIAAEARNDTTRKRRARADEEQGCHPGCDEQGRE--------------TSRSSNSTQQASSLQSPADNSSS------PIVSKNKPKRYIASAPFQGG-RCTFGTRMGKDESDAFEACARRAKHSPMATSGSDPPSA-WGQQERHKLNEIYWELGRPPRRGAGAEREHFFRYTQRHCLVYPNRSPHEVTQRLKLLFRYNGMKEPNEQEHWLQLSTKRGFFPPPQGNA----TGTSENLNPVAEPATPKKAQRLLDFSTLAANTKEPAFT----KKHAPGSDEPXXXXXXXXXXXXXXXXXGGEIRVGGRGLLSAAAASYAAEAIKTASLTSSSTRRPRSSARRSGA-VSPFHDPVRPNSPSWGFGEAPPLS--SSLAGSXXXXXXXXXXXXXXXXXXGGLP------------NSDHDGDDDRP--EETELLDYTSLGAQTISSRATSPAFAFSREGLGSENLSMFQAEKRPAPGPGSFRPNLSATSTHPGPRCGVLIGGRPGSRXXXXXXXXXXXXGADVAGMPEGG-GVSSATPGPGPGRYSTWDAMGRQILSTRPSSPVVTFATGDWELR 1985
            GST + DPFL KESL +L RMGFGKR  RLGPHRYHG+AARTRLSVAGKS+MV+TS  R QHHKERVTINQVNDLAEI REID FT  G+R+P AVWEKYDRINKRHKKHEDM+AIAAEAR    R+ R R ++ Q    GC    ++              T +SS  T++   + +   +SSS       +  +  PKR+ A +PFQGG RCTFG+  G++E+DA E  ARR  H+  A S + P S+ WG QER KLNEIYW+LGRPPRRG  AEREHFFRYTQRHCL++P RSP EV  RLKL+FRYN +KEPNE+EHWL+L+ KRGFFP PQ  A    + T  + +    P    + ++ LDFS+LA+  + P  T    K   PGS+E      XXXXXXXXXXXX                  YAAEA +TAS+ SS +RR R+S R  GA VSPF+DPVRPNSP+WGFGEAPP+S  SS   S  XXXXXXXXXXXXXXXX                N+  +G DD    EETELLDYTSLG QTISSRATSPAF F+R+GLGSENLSMFQA+K+P PGPGSFRPNLSATSTHPG RCGVL+       XXXXXXXXXXXX          G G +S  P PGPG+Y  WD +GRQILSTRPSSPVVTFA+GDW+LR
Sbjct:    6 GSTMEFDPFLGKESLSALGRMGFGKREARLGPHRYHGVAARTRLSVAGKSSMVTTSHHRHQHHKERVTINQVNDLAEIAREIDSFTTAGKRIPVAVWEKYDRINKRHKKHEDMMAIAAEARKKMKRRTRKREEQGQEAGQGCTADNKKDLDGPDQKEGTAFSTDKSSTGTRRHHPVSNNTPSSSSFTADSTELSLERMPKRHTAPSPFQGGGRCTFGSGRGEEEADALEKLARREAHASTAKSRAGPSSSSWGPQERDKLNEIYWDLGRPPRRGVHAEREHFFRYTQRHCLLFPRRSPAEVIARLKLMFRYNTLKEPNEREHWLKLNAKRGFFPQPQQKANAAASSTRNDTSRAVMPTATTEPRQSLDFSSLASEPEHPTATNGLQKWPRPGSEEEPLFRRXXXXXXXXXXXXXXXXXXXXX---------YAAEAKRTASVASSPSRRLRASLRAGGAPVSPFYDPVRPNSPAWGFGEAPPVSPCSSRPCSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDNAHAEGVDDGGGHEETELLDYTSLGLQTISSRATSPAFGFARDGLGSENLSMFQADKKPEPGPGSFRPNLSATSTHPGVRCGVLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGETSTRPSPGPGQYMAWDGIGRQILSTRPSSPVVTFASGDWDLR 682          
BLAST of mRNA_L-elsbetiae_contig48.12672.1 vs. uniprot
Match: A0A6H5JI11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI11_9PHAE)

HSP 1 Score: 440 bits (1132), Expect = 2.970e-143
Identity = 352/686 (51.31%), Postives = 415/686 (60.50%), Query Frame = 3
Query:   84 DLDPFLSKESLDSLARMGFGKRRPRLGPHRYHGIAARTRLSVAGKSTMVSTSEQRRQHHKERVTINQVNDLAEITREIDGFTKVGQRVPAAVWEKYDRINKRHKKHEDMLAIAAEARNDTTRKRRARADEEQGCHPGCDEQGRE--------------TSRSSNSTQQASSLQSPADNSSS------PIVSKNKPKRYIASAPFQGG-RCTFGTRMGKDESDAFEACARRAKHSPMATSGSDPPSA-WGQQERHKLNEIYWELGRPPRRGAGAEREHFFRYTQRHCLVYPNRSPHE---VTQRLKLLFRYNGMKEPNEQEHWLQLSTKRGFFPPPQGNATG----TSENLNPVAEPATPKKAQRLLDFSTLAANTKEPAFT---KKHAP-GSDEPXXXXXXXXXXXXXXXXXGGEIRVGGRGLLSAAAASYAAEAIKTASLTSSSTRRPRSSARRSGA-VSPFHDPVRPNSPSWGFGEAPPLS--SSLAGSXXXXXXXXXXXXXXXXXXGGLP------------NSDHDGDDDRP--EETELLDYTSLGAQTISSRATSPAFAFSREGLGSENLSMFQAEKRPAPGPGSFRPNLSATSTHPGPRCGVLIGGRPGSRXXXXXXXXXXXXGADVAGMPEGGGV--SSATPGPGPGRYSTWDAMGRQILSTRPSSPVVTFATGDWELR 1985
            + + FL KESL +L RMGFGKR  RLGPHRYHG+AARTRLSVAGK                      VNDLAEITREID FT  G+R+P AVWEKYDRINKRHKKH+DM+AIAAEAR    R+ R R ++ Q    GC    ++              T +SS   ++   L +   +SSS       +  +  PK+  A +PFQGG RCTFG+  G++  DA E  ARR  H+  A S + P S+ WG QER KLNEI              E +          L +PN S       + RL  +     ++EPNE+EHWL+L+ KRGFFP PQ  A      T  + + V  PA   + ++ LDFS+LA+  + PA T   +K  P GS+E     XXXXXXXXXXXXX                  Y  EA +TA L SS +RR  +S R SG  VSPFHDPVRPNSP+WGFGEAPP+S  SS  G XXXXXXXXXXXXXXXXXX                N+  +G DD    EETELLDYTSLG QTISSRATSPAF F+R+GLGSENLSMFQA+KRP PGPGSF PNLS+TSTHPG RCGVL+GGR    XXXXXXXXXXXX            V  SS  P PGPG+Y  WDA+GRQILSTRPSSPVVTFA+GDW+LR
Sbjct:    2 EFESFLGKESLAALGRMGFGKREARLGPHRYHGVAARTRLSVAGK----------------------VNDLAEITREIDSFTSAGKRIPVAVWEKYDRINKRHKKHDDMMAIAAEARIKIKRRTRKREEQGQAAGQGCTADSKKNLDGSDQKEGIAFSTDKSSTGIRRHHPLSNNPSSSSSFTADSTELSLERMPKQRTAPSPFQGGGRCTFGSGRGEEGGDALETLARREAHASTAKSRAGPSSSSWGPQERDKLNEI-------------CESD-----CSNQRLSFPNTSSCSYCCTSSRLCAV-----VQEPNEREHWLKLNAKRGFFPQPQQKANAAAGSTRNDTSRVVMPAATTEPRQPLDFSSLASEPQHPAATNGLQKWLPAGSEEEPLFRXXXXXXXXXXXXXXXXXXXXXX---------YTTEAKRTAFLESSPSRRLHASLRASGTPVSPFHDPVRPNSPAWGFGEAPPVSPRSSRPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDNAHAEGVDDGGGHEETELLDYTSLGVQTISSRATSPAFGFARDGLGSENLSMFQADKRPEPGPGSFCPNLSSTSTHPGVRCGVLMGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGSSTRPSPGPGQYMVWDAIGRQILSTRPSSPVVTFASGDWDLR 633          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig48.12672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQC6_ECTSI4.450e-20658.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI11_9PHAE2.970e-14351.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig48contigL-elsbetiae_contig48:32743..36742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006610.1
Exons5
Model size1988
Cds size1929
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig48.12672.1prot_L-elsbetiae_contig48.12672.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig48 32802..36742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816469.0568812-UTR-L-elsbetiae_contig48:32742..328011622816469.0568812-UTR-L-elsbetiae_contig48:32742..32801Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 32743..32801 +
1691683582.2545207-UTR-L-elsbetiae_contig48:32742..328011691683582.2545207-UTR-L-elsbetiae_contig48:32742..32801Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 32743..32801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816469.0706778-CDS-L-elsbetiae_contig48:32801..329601622816469.0706778-CDS-L-elsbetiae_contig48:32801..32960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 32802..32960 +
1691683582.269831-CDS-L-elsbetiae_contig48:32801..329601691683582.269831-CDS-L-elsbetiae_contig48:32801..32960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 32802..32960 +
1622816469.082807-CDS-L-elsbetiae_contig48:33203..332691622816469.082807-CDS-L-elsbetiae_contig48:33203..33269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 33204..33269 +
1691683582.2787554-CDS-L-elsbetiae_contig48:33203..332691691683582.2787554-CDS-L-elsbetiae_contig48:33203..33269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 33204..33269 +
1622816469.0927227-CDS-L-elsbetiae_contig48:33601..341121622816469.0927227-CDS-L-elsbetiae_contig48:33601..34112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 33602..34112 +
1691683582.2873545-CDS-L-elsbetiae_contig48:33601..341121691683582.2873545-CDS-L-elsbetiae_contig48:33601..34112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 33602..34112 +
1622816469.1048865-CDS-L-elsbetiae_contig48:34718..348731622816469.1048865-CDS-L-elsbetiae_contig48:34718..34873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 34719..34873 +
1691683582.2956834-CDS-L-elsbetiae_contig48:34718..348731691683582.2956834-CDS-L-elsbetiae_contig48:34718..34873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 34719..34873 +
1622816469.116726-CDS-L-elsbetiae_contig48:35704..367421622816469.116726-CDS-L-elsbetiae_contig48:35704..36742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 35705..36742 +
1691683582.3036366-CDS-L-elsbetiae_contig48:35704..367421691683582.3036366-CDS-L-elsbetiae_contig48:35704..36742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 35705..36742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig48.12672.1

>prot_L-elsbetiae_contig48.12672.1 ID=prot_L-elsbetiae_contig48.12672.1|Name=mRNA_L-elsbetiae_contig48.12672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=643bp
MVRNGSTKDLDPFLSKESLDSLARMGFGKRRPRLGPHRYHGIAARTRLSV
AGKSTMVSTSEQRRQHHKERVTINQVNDLAEITREIDGFTKVGQRVPAAV
WEKYDRINKRHKKHEDMLAIAAEARNDTTRKRRARADEEQGCHPGCDEQG
RETSRSSNSTQQASSLQSPADNSSSPIVSKNKPKRYIASAPFQGGRCTFG
TRMGKDESDAFEACARRAKHSPMATSGSDPPSAWGQQERHKLNEIYWELG
RPPRRGAGAEREHFFRYTQRHCLVYPNRSPHEVTQRLKLLFRYNGMKEPN
EQEHWLQLSTKRGFFPPPQGNATGTSENLNPVAEPATPKKAQRLLDFSTL
AANTKEPAFTKKHAPGSDEPPPASSEEPIFRRSGGGKGGEIRVGGRGLLS
AAAASYAAEAIKTASLTSSSTRRPRSSARRSGAVSPFHDPVRPNSPSWGF
GEAPPLSSSLAGSRGGGGGSRGGSRGASTGAGGLPNSDHDGDDDRPEETE
LLDYTSLGAQTISSRATSPAFAFSREGLGSENLSMFQAEKRPAPGPGSFR
PNLSATSTHPGPRCGVLIGGRPGSRGGGSGGCSGGSGGADVAGMPEGGGV
SSATPGPGPGRYSTWDAMGRQILSTRPSSPVVTFATGDWELR*
back to top

mRNA from alignment at L-elsbetiae_contig48:32743..36742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig48.12672.1 ID=mRNA_L-elsbetiae_contig48.12672.1|Name=mRNA_L-elsbetiae_contig48.12672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4000bp|location=Sequence derived from alignment at L-elsbetiae_contig48:32743..36742+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCTCTCCTCGTCGCTCTCGCTCCCTGAGCATTACGTACCACTACAAAA CACACAGGCATGGTCCGGAATGGATCTACAAAGGATCTTGATCCATTCCT AAGCAAGGAGAGCCTGGACTCGTTGGCAAGGATGGGCTTCGGGAAGAGGA GACCTCGGCTTGGGCCTCATCGTTATCACGGAATCGCCGCAAGAACGAGG CTATCCGTTGCGGGCAAGGTAACATCGTTGGCTACGTAGCACGAAGGAAC GACTTGTAGCGCTCGGTTGACGCCAAGGAAATAAACTCTGCAACCTCACG GACCTCACGGCACTCCGACGATAATACAATGAAGGCCCACCGAAACCACC AGGTTCACGAAGGAACGATATATCACAGATAACAGCACAACAGTTTAGAA CGCTACGAAACTTTGGTCTGCCTGATACTCCCCTCTCGACACCTCTTAAC CATGGCTTCAGAGCACGATGGTGAGCACTTCGGAGCAGCGACGCCAGCAC CACAAGGAACGAGTAACCATCAATCAGGTGAGTGATCAGCGTTTACGTGT GTGCGGTAGCCGAGCGCAGCCTTTCATGTTTGCGGCATCGGCGATCTGGA GTGAAACCTTCATCACGGACAGGGCGGATGTGGACCACGCTGATCCTTGT GTGCTTTTTACGGAGCCACTTATATTCCGTTTCGTCGGGCTTTGGGTGGC ACCAACTCCGATCGAAGGGGCTATCCATCGGTGAATTTTACGGCAAAAGA GCAGTTGTTAGATATATTCTAAACCTAGAAGTACATTCGAAGTACTACTG GTAGAAGCTTGATTGCGCATTGAAATAGCCTGTTTTGCCCAAACTCGCGT GTTCATCAGGTTAACGATCTGGCAGAAATTACTCGCGAAATCGACGGTTT CACCAAAGTTGGTCAACGGGTTCCCGCGGCTGTCTGGGAGAAGTATGACC GAATCAACAAGCGCCACAAGAAGCACGAAGACATGCTTGCAATCGCGGCT GAGGCGCGCAATGATACCACCCGGAAGAGGAGAGCCCGAGCAGATGAAGA ACAAGGGTGTCATCCAGGCTGCGATGAACAAGGGCGCGAAACTAGCAGAA GCAGCAACAGCACACAACAAGCCTCTTCGTTGCAGTCACCCGCAGACAAC TCGTCGTCACCTATAGTGTCTAAAAATAAACCTAAACGATACATAGCCTC GGCCCCGTTTCAAGGCGGGCGCTGCACCTTCGGTACTCGCATGGGCAAAG ACGAAAGCGACGCCTTCGAGGCGTGTGCGAGGCGAGCAAAACACTCTCCG ATGGCTACATCTGGGAGTGACCCTCCTTCTGCATGGGGACAGCAAGAGCG ACATAAATTGAACGAAATCTGTGAGTGCAACCGCAGCCTCGTCGTCGTCG GTGTTGCTCTTGGTGGTGTTTACTTTCAAACGCTAGAGCAGTCTGATACG TGTTTACACGGTAGGGTGAGGCGGCATGTACTCGGCCTGGTCGGTGAAAC TCGACATGGAATCCTCCGGCATTATGGGCGGGTGTGGGAAGCCTTCGGCT CTCCGTAGCTCTCTTTCCCCTACCTGGCGTGGTGTCTGTTTTTTTTACTT TTTTGTATTTTATCTTCCGAGTGGTATGTACCTACCTTCTGATATGTTAT GCCAGCGAGACGCAAGACCCCTTCAGAGATCAGCGAAATACCGCCGGGGG CGTATGTAACACACTTTTGTTTTAATTTTTCTTCCGCGGCGTCGAGTGTG CCCTATTTTTTGTCACCATGGGCCCCCGTGGATGTTTTTGGACTCGAGAG ATAATGTAAGAAGCAACAACTCGGCAGGAATTTGCTTGCAACTGACTGGA CTGAGCTATTCGTCTGTTTTGTCGGGAGTTGAAAAGCACGTGATCAGGGG TTAATGGATCGAGGGTTCATTTTTGAAAATTCGTTTAGTGCTGCTCCTCG CGGAAATTCCGTCCTTCTTCTTCCAGATTGGGAGCTCGGACGGCCTCCAC GCCGTGGCGCTGGCGCCGAACGCGAGCATTTCTTTCGCTACACGCAAAGG CACTGTTTGGTCTATCCTAACCGCTCCCCACACGAGGTTACTCAGAGGCT TAAGCTCCTGTTCCGCTACAATGGAATGAAGGTGAGAGAATGAACAAAGT CTGGCATGATGAGGGCGAGTATAAGGGAACTAACAGCATGCGAAGCTTGT ACATGTATCATGCCAGGTAGGCACCTTTCGCTATCATTTGTGGTGAGTAA AATTGACAAGATTAGTGTTCACAAAGCGTGCAGATAAGGCTTGCAAGGGA TAAAACGGAGTCTTGTCTCAGGTGAGCGTTCCTGTTTTGAAAATAAATCG GAAAATCAAAGAGGGAACCTCCCCACACAAGGAACCGCGGTCTCTGTGTG GTGAATTAACAATTCCATACAGTGATGAAATATCGGTCCGGCCAAGTAGG AAAACACCTATAATATGAAAAACTTCATCATCTCCCCTGCACAATCCTGC CAGATCAAACAGTATGTATTTCAGGGAGAAACCGACCGTAATGCTGTGGT GTTGCCGTTTCCATCGTAGTAGGAACACTTGCTCTCTGTCTGTCTAAAGC AGACAGAAAGCTAAATTAGTCTAGAGGGTACAATGCTGCGAGTGTTCCTG TTTTGACTTAATCTTTTCTCTCCGAAGAATCACACAGTTTATCAGTAGTC ACAAGGGAAGAACTAAAAAATATTTGATGTTCACGTGTTGCCATGGACGA TGTGACGTGCGTTGAGACGGAAGAGCAAAAAACTATTGCAAACACCTCGC CGGTTAATGACCTACGATTCCCGTACATGAAGTTGTCGATAGTGGCTAGT TGCCCCTCAGTCACGTGCTGGGGCGGGTTTCGTCCAAAATCTGCAGTACA CAGAGACACCGGAAAAAAACAAGCAAACGTAAGCAACTCCTCTTGCCCTT CTTTTCGTGCAGGAACCAAACGAGCAAGAGCACTGGCTTCAACTAAGTAC CAAGCGGGGCTTCTTCCCGCCGCCGCAGGGCAACGCCACCGGCACTTCCG AAAACCTCAACCCCGTTGCTGAACCAGCGACCCCGAAAAAAGCCCAACGA CTGCTTGACTTCTCCACCCTGGCAGCGAACACCAAGGAGCCGGCGTTCAC CAAGAAACATGCTCCTGGGTCCGACGAGCCGCCACCTGCAAGTTCAGAAG AGCCCATTTTTCGCCGTTCCGGAGGTGGCAAAGGCGGGGAAATACGTGTT GGTGGTCGTGGGCTGTTGTCGGCCGCCGCTGCCTCATATGCTGCTGAGGC TATCAAAACCGCTTCTCTTACATCATCCTCGACTCGCCGACCACGGTCAA GCGCACGTAGAAGTGGCGCCGTGTCTCCCTTCCACGACCCAGTCCGTCCC AACTCCCCCTCGTGGGGTTTTGGGGAAGCACCACCGCTGTCCTCTTCCCT AGCTGGCTCGCGTGGTGGTGGAGGCGGAAGTCGTGGAGGCTCTCGTGGTG CATCGACAGGGGCAGGAGGCCTGCCCAATAGCGACCACGACGGCGACGAT GACAGACCCGAAGAAACGGAGCTGCTCGACTACACCTCGCTGGGCGCGCA GACTATCTCCAGCCGGGCTACCTCCCCGGCGTTCGCGTTCTCGAGGGAAG GCCTCGGCTCAGAGAACCTGTCCATGTTTCAGGCCGAAAAACGGCCGGCA CCGGGGCCCGGCAGCTTCCGGCCGAACCTTTCGGCGACGAGTACGCACCC GGGCCCCCGGTGTGGGGTGCTGATCGGAGGGCGCCCGGGATCGCGAGGTG GCGGCAGCGGCGGTTGTTCCGGTGGCAGTGGGGGTGCTGATGTAGCTGGT ATGCCGGAGGGAGGCGGGGTCTCGTCTGCGACACCAGGGCCAGGGCCCGG GCGGTACTCAACGTGGGACGCGATGGGGAGACAGATTTTGTCGACGAGAC CGTCGTCGCCGGTTGTGACATTTGCCACCGGAGATTGGGAGTTGCGTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig48:32743..36742+

>mRNA_L-elsbetiae_contig48.12672.1 ID=mRNA_L-elsbetiae_contig48.12672.1|Name=mRNA_L-elsbetiae_contig48.12672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3858bp|location=Sequence derived from alignment at L-elsbetiae_contig48:32743..36742+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCCGGAATGGATCTACAAAGGATCTTGATCCATTCCTAAGCAAGGA
GAGCCTGGACTCGTTGGCAAGGATGGGCTTCGGGAAGAGGAGACCTCGGC
TTGGGCCTCATCGTTATCACGGAATCGCCGCAAGAACGAGGCTATCCGTT
GCGGGCAAGATGGTCCGGAATGGATCTACAAAGGATCTTGATCCATTCCT
AAGCAAGGAGAGCCTGGACTCGTTGGCAAGGATGGGCTTCGGGAAGAGGA
GACCTCGGCTTGGGCCTCATCGTTATCACGGAATCGCCGCAAGAACGAGG
CTATCCGTTGCGGGCAAGAGCACGATGGTGAGCACTTCGGAGCAGCGACG
CCAGCACCACAAGGAACGAGTAACCATCAATCAGAGCACGATGGTGAGCA
CTTCGGAGCAGCGACGCCAGCACCACAAGGAACGAGTAACCATCAATCAG
GTTAACGATCTGGCAGAAATTACTCGCGAAATCGACGGTTTCACCAAAGT
TGGTCAACGGGTTCCCGCGGCTGTCTGGGAGAAGTATGACCGAATCAACA
AGCGCCACAAGAAGCACGAAGACATGCTTGCAATCGCGGCTGAGGCGCGC
AATGATACCACCCGGAAGAGGAGAGCCCGAGCAGATGAAGAACAAGGGTG
TCATCCAGGCTGCGATGAACAAGGGCGCGAAACTAGCAGAAGCAGCAACA
GCACACAACAAGCCTCTTCGTTGCAGTCACCCGCAGACAACTCGTCGTCA
CCTATAGTGTCTAAAAATAAACCTAAACGATACATAGCCTCGGCCCCGTT
TCAAGGCGGGCGCTGCACCTTCGGTACTCGCATGGGCAAAGACGAAAGCG
ACGCCTTCGAGGCGTGTGCGAGGCGAGCAAAACACTCTCCGATGGCTACA
TCTGGGAGTGACCCTCCTTCTGCATGGGGACAGCAAGAGCGACATAAATT
GAACGAAATCTGTTAACGATCTGGCAGAAATTACTCGCGAAATCGACGGT
TTCACCAAAGTTGGTCAACGGGTTCCCGCGGCTGTCTGGGAGAAGTATGA
CCGAATCAACAAGCGCCACAAGAAGCACGAAGACATGCTTGCAATCGCGG
CTGAGGCGCGCAATGATACCACCCGGAAGAGGAGAGCCCGAGCAGATGAA
GAACAAGGGTGTCATCCAGGCTGCGATGAACAAGGGCGCGAAACTAGCAG
AAGCAGCAACAGCACACAACAAGCCTCTTCGTTGCAGTCACCCGCAGACA
ACTCGTCGTCACCTATAGTGTCTAAAAATAAACCTAAACGATACATAGCC
TCGGCCCCGTTTCAAGGCGGGCGCTGCACCTTCGGTACTCGCATGGGCAA
AGACGAAAGCGACGCCTTCGAGGCGTGTGCGAGGCGAGCAAAACACTCTC
CGATGGCTACATCTGGGAGTGACCCTCCTTCTGCATGGGGACAGCAAGAG
CGACATAAATTGAACGAAATCTATTGGGAGCTCGGACGGCCTCCACGCCG
TGGCGCTGGCGCCGAACGCGAGCATTTCTTTCGCTACACGCAAAGGCACT
GTTTGGTCTATCCTAACCGCTCCCCACACGAGGTTACTCAGAGGCTTAAG
CTCCTGTTCCGCTACAATGGAATGAAGATTGGGAGCTCGGACGGCCTCCA
CGCCGTGGCGCTGGCGCCGAACGCGAGCATTTCTTTCGCTACACGCAAAG
GCACTGTTTGGTCTATCCTAACCGCTCCCCACACGAGGTTACTCAGAGGC
TTAAGCTCCTGTTCCGCTACAATGGAATGAAGGAACCAAACGAGCAAGAG
CACTGGCTTCAACTAAGTACCAAGCGGGGCTTCTTCCCGCCGCCGCAGGG
CAACGCCACCGGCACTTCCGAAAACCTCAACCCCGTTGCTGAACCAGCGA
CCCCGAAAAAAGCCCAACGACTGCTTGACTTCTCCACCCTGGCAGCGAAC
ACCAAGGAGCCGGCGTTCACCAAGAAACATGCTCCTGGGTCCGACGAGCC
GCCACCTGCAAGTTCAGAAGAGCCCATTTTTCGCCGTTCCGGAGGTGGCA
AAGGCGGGGAAATACGTGTTGGTGGTCGTGGGCTGTTGTCGGCCGCCGCT
GCCTCATATGCTGCTGAGGCTATCAAAACCGCTTCTCTTACATCATCCTC
GACTCGCCGACCACGGTCAAGCGCACGTAGAAGTGGCGCCGTGTCTCCCT
TCCACGACCCAGTCCGTCCCAACTCCCCCTCGTGGGGTTTTGGGGAAGCA
CCACCGCTGTCCTCTTCCCTAGCTGGCTCGCGTGGTGGTGGAGGCGGAAG
TCGTGGAGGCTCTCGTGGTGCATCGACAGGGGCAGGAGGCCTGCCCAATA
GCGACCACGACGGCGACGATGACAGACCCGAAGAAACGGAGCTGCTCGAC
TACACCTCGCTGGGCGCGCAGACTATCTCCAGCCGGGCTACCTCCCCGGC
GTTCGCGTTCTCGAGGGAAGGCCTCGGCTCAGAGAACCTGTCCATGTTTC
AGGCCGAAAAACGGCCGGCACCGGGGCCCGGCAGCTTCCGGCCGAACCTT
TCGGCGACGAGTACGCACCCGGGCCCCCGGTGTGGGGTGCTGATCGGAGG
GCGCCCGGGATCGCGAGGTGGCGGCAGCGGCGGTTGTTCCGGTGGCAGTG
GGGGTGCTGATGTAGCTGGTATGCCGGAGGGAGGCGGGGTCTCGTCTGCG
ACACCAGGGCCAGGGCCCGGGCGGTACTCAACGTGGGACGCGATGGGGAG
ACAGATTTTGTCGACGAGACCGTCGTCGCCGGTTGTGACATTTGCCACCG
GAGATTGGGAGTTGCGTTGAGAACCAAACGAGCAAGAGCACTGGCTTCAA
CTAAGTACCAAGCGGGGCTTCTTCCCGCCGCCGCAGGGCAACGCCACCGG
CACTTCCGAAAACCTCAACCCCGTTGCTGAACCAGCGACCCCGAAAAAAG
CCCAACGACTGCTTGACTTCTCCACCCTGGCAGCGAACACCAAGGAGCCG
GCGTTCACCAAGAAACATGCTCCTGGGTCCGACGAGCCGCCACCTGCAAG
TTCAGAAGAGCCCATTTTTCGCCGTTCCGGAGGTGGCAAAGGCGGGGAAA
TACGTGTTGGTGGTCGTGGGCTGTTGTCGGCCGCCGCTGCCTCATATGCT
GCTGAGGCTATCAAAACCGCTTCTCTTACATCATCCTCGACTCGCCGACC
ACGGTCAAGCGCACGTAGAAGTGGCGCCGTGTCTCCCTTCCACGACCCAG
TCCGTCCCAACTCCCCCTCGTGGGGTTTTGGGGAAGCACCACCGCTGTCC
TCTTCCCTAGCTGGCTCGCGTGGTGGTGGAGGCGGAAGTCGTGGAGGCTC
TCGTGGTGCATCGACAGGGGCAGGAGGCCTGCCCAATAGCGACCACGACG
GCGACGATGACAGACCCGAAGAAACGGAGCTGCTCGACTACACCTCGCTG
GGCGCGCAGACTATCTCCAGCCGGGCTACCTCCCCGGCGTTCGCGTTCTC
GAGGGAAGGCCTCGGCTCAGAGAACCTGTCCATGTTTCAGGCCGAAAAAC
GGCCGGCACCGGGGCCCGGCAGCTTCCGGCCGAACCTTTCGGCGACGAGT
ACGCACCCGGGCCCCCGGTGTGGGGTGCTGATCGGAGGGCGCCCGGGATC
GCGAGGTGGCGGCAGCGGCGGTTGTTCCGGTGGCAGTGGGGGTGCTGATG
TAGCTGGTATGCCGGAGGGAGGCGGGGTCTCGTCTGCGACACCAGGGCCA
GGGCCCGGGCGGTACTCAACGTGGGACGCGATGGGGAGACAGATTTTGTC
GACGAGACCGTCGTCGCCGGTTGTGACATTTGCCACCGGAGATTGGGAGT
TGCGTTGA
back to top