mRNA_L-elsbetiae_contig48.12670.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig48.12670.1
Unique NamemRNA_L-elsbetiae_contig48.12670.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig48.12670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig48contigL-elsbetiae_contig48:28796..29400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig48.12670.1prot_L-elsbetiae_contig48.12670.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig48 28827..29222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816468.537722-UTR-L-elsbetiae_contig48:28795..288261622816468.537722-UTR-L-elsbetiae_contig48:28795..28826Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 28796..28826 +
1691683581.920616-UTR-L-elsbetiae_contig48:28795..288261691683581.920616-UTR-L-elsbetiae_contig48:28795..28826Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 28796..28826 +
1622816468.5627768-UTR-L-elsbetiae_contig48:29222..294001622816468.5627768-UTR-L-elsbetiae_contig48:29222..29400Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 29223..29400 +
1691683581.943444-UTR-L-elsbetiae_contig48:29222..294001691683581.943444-UTR-L-elsbetiae_contig48:29222..29400Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 29223..29400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816468.5496986-CDS-L-elsbetiae_contig48:28826..292221622816468.5496986-CDS-L-elsbetiae_contig48:28826..29222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 28827..29222 +
1691683581.933063-CDS-L-elsbetiae_contig48:28826..292221691683581.933063-CDS-L-elsbetiae_contig48:28826..29222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 28827..29222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig48.12670.1

>prot_L-elsbetiae_contig48.12670.1 ID=prot_L-elsbetiae_contig48.12670.1|Name=mRNA_L-elsbetiae_contig48.12670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MLPWCEPCCKSSRHRRYGSNHSLFILRRAGSRSDMKTFSFHEKTWQRLTS
APSGWWWPPLLGFQTGWCCICTPFPRGIGATRGSATCMAVACIPIRCVPN
GRLLWCLSAASRKRGISPSTAHGFEFDQSSS*
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mRNA from alignment at L-elsbetiae_contig48:28796..29400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig48.12670.1 ID=mRNA_L-elsbetiae_contig48.12670.1|Name=mRNA_L-elsbetiae_contig48.12670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=605bp|location=Sequence derived from alignment at L-elsbetiae_contig48:28796..29400+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGTCGTTCAACAACGTGTATCCCGTGGCATGCTGCCGTGGTGTGAGC
CTTGCTGCAAGTCAAGCAGGCACCGCCGATATGGTTCCAACCACTCCCTA
TTTATTCTTCGTCGTGCAGGATCGAGATCCGACATGAAAACGTTCAGTTT
TCACGAGAAAACGTGGCAAAGACTCACGAGTGCGCCCAGTGGTTGGTGGT
GGCCGCCTCTACTAGGATTCCAAACCGGGTGGTGCTGCATATGTACTCCG
TTCCCGAGAGGGATAGGCGCAACAAGGGGGTCCGCAACCTGCATGGCCGT
CGCCTGCATCCCCATACGTTGCGTGCCCAACGGTCGTCTCCTCTGGTGTC
TATCTGCGGCTTCACGTAAAAGAGGAATCTCCCCTTCCACGGCACATGGC
TTCGAATTCGATCAGTCCTCTAGCTGACGAATTCCCCCCCGAGTTACAAT
ATGTTTTACCCTCTCGAACAATGCTGGCGCTCCAACACATAAGAACAAGA
ACACTAAAATTTCCAACACATAACAATACGAGAACTCGCCATCGAGCCTC
TGGATGTTTCCGGTGTACTCTACATACCGAGGTGCCGGGGCGACGAACTT
CTTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig48:28796..29400+

>mRNA_L-elsbetiae_contig48.12670.1 ID=mRNA_L-elsbetiae_contig48.12670.1|Name=mRNA_L-elsbetiae_contig48.12670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig48:28796..29400+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCCGTGGTGTGAGCCTTGCTGCAAGTCAAGCAGGCACCGCCGATA
TGGTTCCAACCACTCCCTATTTATTCTTCGTCGTGCAGGATCGAGATCCG
ACATGAAAACGTTCAGTTTTCACGAGAAAACGTGGCAAAGACTCACGAGT
GCGCCCAGTGGTTGGTGGTGGCCGCCTCTACTAGGATTCCAAACCGGGTG
GTGCTGCATATGTACTCCGTTCCCGAGAGGGATAGGCGCAACAAGGGGGT
CCGCAACCTGCATGGCCGTCGCCTGCATCCCCATACGTTGCGTGCCCAAC
GGTCGTCTCCTCTGGTGTCTATCTGCGGCTTCACGTAAAAGAGGAATCTC
CCCTTCCACGGCACATGGCTTCGAATTCGATCAGTCCTCTAGCTGAATGC
TGCCGTGGTGTGAGCCTTGCTGCAAGTCAAGCAGGCACCGCCGATATGGT
TCCAACCACTCCCTATTTATTCTTCGTCGTGCAGGATCGAGATCCGACAT
GAAAACGTTCAGTTTTCACGAGAAAACGTGGCAAAGACTCACGAGTGCGC
CCAGTGGTTGGTGGTGGCCGCCTCTACTAGGATTCCAAACCGGGTGGTGC
TGCATATGTACTCCGTTCCCGAGAGGGATAGGCGCAACAAGGGGGTCCGC
AACCTGCATGGCCGTCGCCTGCATCCCCATACGTTGCGTGCCCAACGGTC
GTCTCCTCTGGTGTCTATCTGCGGCTTCACGTAAAAGAGGAATCTCCCCT
TCCACGGCACATGGCTTCGAATTCGATCAGTCCTCTAGCTGA
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