mRNA_L-elsbetiae_contig48.12669.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig48.12669.1
Unique NamemRNA_L-elsbetiae_contig48.12669.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: A0A6H5JF24_9PHAE (G-patch domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF24_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 3.940e-68
Identity = 182/261 (69.73%), Postives = 194/261 (74.33%), Query Frame = 2
Query:   74 APRVGDTLNQAWKNDKSKFGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYGDGT-TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIASASAQAASACPSRARRVKSKDVKGFSAADLRAILGQAATTANPSIPSYPVIGGGXXXXXXXXXXXXXXXXXXXXXXXXXX-SKAAPADTP-HRPRTRSMDETVA-GEPSKL--GKRPRQQ 838
            APRVGDT NQAWKNDKSKFGLKM+QKMGWTEGKGLGK+EDGVSEHVKVAKKSNNLGLGAT D+SGAAGWASAAVSFNGVLE LGKAYG G   G             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A  +AQAAS+CPSRARRV+SKDVKGFSAA+LRAILGQAATTA+PS+PSYPV+ GG                           SK+   D P  RPRTRSMDET    EP  +  GKRPR Q
Sbjct:    5 APRVGDTQNQAWKNDKSKFGLKMMQKMGWTEGKGLGKNEDGVSEHVKVAKKSNNLGLGATRDSSGAAGWASAAVSFNGVLETLGKAYGGGADVGGKAKMKGDKRTKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAMTAAQAASSCPSRARRVRSKDVKGFSAAELRAILGQAATTADPSLPSYPVVRGGCGTEGAAAAATEPKISKKKSSNKKSKGSKSTSLDAPPRRPRTRSMDETAPPAEPPAVVGGKRPRDQ 265          
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: D7FQC4_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC4_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 3.410e-44
Identity = 126/260 (48.46%), Postives = 137/260 (52.69%), Query Frame = 2
Query:   74 APRVGDTLNQAWKNDKSKFGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYGDGTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIASASAQAASACPSRARRVKSKDVKGFSAADLRAILGQAATTANPSIPSYPVIGGGXXXXXXXXXXXXXXXXXXXXXXXXXX-SKAAPADTP-HRPRTRSMDETVA-GEPSKL--GKRPRQQ 838
            APRVGDT NQAWKNDKSKFGLKM+QKMGWTEGKGLGK+EDGVSEHVKV+KKSNNLGLGATHD+SGAAGWASAA                                                                                       DVKGFSAA+LRAILGQAATTA+PS+PSYPV+ GG                 XXXXXXX   SK+   D P  RPRTRSMDET    EP+ +  GKRPR Q
Sbjct:    5 APRVGDTQNQAWKNDKSKFGLKMMQKMGWTEGKGLGKNEDGVSEHVKVSKKSNNLGLGATHDSSGAAGWASAA---------------------------------------------------------------------------------------DVKGFSAAELRAILGQAATTADPSLPSYPVVRGGYGAEAAAAAATDPKISKXXXXXXXSKGSKSTTLDAPPRRPRTRSMDETAPLAEPAAIVGGKRPRDQ 177          
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: A0A835ZDF6_9STRA (G-patch domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.840e-23
Identity = 82/177 (46.33%), Postives = 107/177 (60.45%), Query Frame = 2
Query:   92 TLNQAWKNDKSK-FGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYGDGTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIASASAQAASACPSRARRVKSKDVKGFSAADLRAILGQAATTAN 619
            TLNQAW N ++     K+++KMGW+EGKGLGK EDG++ H++V ++  NLGLGA  D  G+AGW++   SF+ VL  L +AY                                 XXXXXXXXXXXXXXXXX  A+A   +   CPSRARRVK+KD++ FS+ DL+AILG A   A+
Sbjct:   25 TLNQAWANSRTDGIAYKLMRKMGWSEGKGLGKDEDGIASHIRVQRRDGNLGLGAAKDRDGSAGWSATTTSFSAVLATLNQAY---------------------------QPPKKDXXXXXXXXXXXXXXXXXKAAAAGISSGDVCPSRARRVKAKDIRTFSSTDLKAILGHAPAVAD 174          
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: A0A6V1RLJ9_HETAK (Hypothetical protein n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RLJ9_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 3.650e-19
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 2
Query:   47 LAMATASVEAPRVGDTLNQAWKNDKSKFGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYG 337
            +A +  +V    + D LN  WKNDK+ FG +ML KMGW+EGKGLGK+EDG S H+ V+KK++ LGLG   D  G +GW+S+  SF  VL  L   YG
Sbjct:    1 MAASAVAVARSNLKDNLNSHWKNDKTGFGFRMLSKMGWSEGKGLGKNEDGQSSHIIVSKKTDALGLGCDKDTIGNSGWSSSIQSFTDVLAQLNAKYG 97          
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: A0A2R5GL57_9STRA (Protein PXR1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GL57_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.570e-16
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   89 DTLNQAWKNDKSKFGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYG 337
            DTLNQ W NDK+KFG KM+ KMGW++GKG GK+EDG + HVKV K++  LGLG   D  G   +     +FN VL +L +A+G
Sbjct:    8 DTLNQRWANDKNKFGYKMMLKMGWSDGKGTGKNEDGRASHVKVEKRTETLGLGTEEDGVGNVAFQGQINNFNDVLRSLNQAHG 90          
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: K3WMW5_GLOUD (G-patch domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMW5_GLOUD)

HSP 1 Score: 87.0 bits (214), Expect = 7.960e-16
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   80 RVGDTLNQAWKNDKSKFGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYGD 340
            ++G   N AW  D SKFG KML KMGW  GKG+GK   G + HVK+A++S NLG+G +   +   GW+S A SF  VL+ L K YGD
Sbjct:   25 QMGGMQNMAWAADTSKFGYKMLVKMGWAAGKGVGKDLQGQATHVKIARRSENLGVGCSLKQAEVQGWSSTATSFADVLKTLNKKYGD 111          
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: A0A662XRZ5_9STRA (G-patch domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRZ5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.300e-15
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   83 VGDTLNQAWKNDKSKFGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYGDGTTG 352
            VG   N AW  D SKFG KML KMGW+ GKG+GK   G + HVK+A++S NLG+G +   +   GW++ A  F  VL+ L K+YG  ++G
Sbjct:   28 VGGLQNMAWAADTSKFGFKMLMKMGWSAGKGVGKDLQGQATHVKIARRSENLGVGCSLKQAEVQGWSNTAAGFADVLKTLNKSYGSKSSG 117          
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: A0A4D9CU62_9STRA (G-patch domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU62_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.670e-15
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 2
Query:   89 DTLNQAWKNDKSK-FGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYG 337
            DTLNQ W + K K FG KM+ KMGW++G+GLGK   G + HV VAKK +N GLG+  D +G AGW  A+ +F+ VL  L + YG
Sbjct:   22 DTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDNAGLGSVRDETGNAGWTEASATFDSVLSKLNETYG 105          
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: A0A0P1AVK5_PLAHL (Pin2 terf1-interacting telomerase inhibitor 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVK5_PLAHL)

HSP 1 Score: 86.3 bits (212), Expect = 2.200e-15
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 2
Query:   83 VGDTLNQAWKNDKSKFGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAY 334
            VG   N AW +D SKFG KML KMGW+ GKG+GKH  G + HVKVA++S NLG+G +   +   GWA  A  F  VL AL  +Y
Sbjct:   28 VGGMQNMAWASDTSKFGFKMLVKMGWSAGKGVGKHLQGQATHVKVARRSENLGVGCSLKQAEVQGWAETAGGFADVLNALNNSY 111          
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Match: G5A278_PHYSP (G-patch domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G5A278_PHYSP)

HSP 1 Score: 85.5 bits (210), Expect = 3.110e-15
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 2
Query:   47 LAMATASVEAPRVGDTL-------NQAWKNDKSKFGLKMLQKMGWTEGKGLGKHEDGVSEHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYGDGTTG 352
            +A +++ VE    G T+       N AW  D SKFG KML KMGW+ GKG+GK+  G + HVK+A++S NLG+G +   +   GW+  A  F  VL+ L K+YG   +G
Sbjct:    6 VASSSSPVETDEAGKTMVAMGGMQNMAWAADTSKFGFKMLVKMGWSAGKGVGKNLQGQATHVKIARRSENLGVGCSLKQAEVQGWSETAGGFADVLKTLNKSYGGSKSG 114          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig48.12669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF24_9PHAE3.940e-6869.73G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
D7FQC4_ECTSI3.410e-4448.46G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZDF6_9STRA7.840e-2346.33G-patch domain-containing protein n=1 Tax=Tribonem... [more]
A0A6V1RLJ9_HETAK3.650e-1950.52Hypothetical protein n=5 Tax=Heterosigma akashiwo ... [more]
A0A2R5GL57_9STRA2.570e-1653.01Protein PXR1 n=1 Tax=Hondaea fermentalgiana TaxID=... [more]
K3WMW5_GLOUD7.960e-1650.57G-patch domain-containing protein n=1 Tax=Globispo... [more]
A0A662XRZ5_9STRA1.300e-1547.78G-patch domain-containing protein n=2 Tax=Nothophy... [more]
A0A4D9CU62_9STRA1.670e-1552.38G-patch domain-containing protein n=1 Tax=Nannochl... [more]
A0A0P1AVK5_PLAHL2.200e-1552.38Pin2 terf1-interacting telomerase inhibitor 1 n=1 ... [more]
G5A278_PHYSP3.110e-1542.20G-patch domain-containing protein n=6 Tax=Phytopht... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig48contigL-elsbetiae_contig48:25973..28268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D7FQC4
Preferred namePINX1
KEGG koko:K09270,ko:K11135
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000781,GO:0000784,GO:0000793,GO:0000819,GO:0000981,GO:0001067,GO:0001704,GO:0001706,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003723,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006278,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007049,GO:0007059,GO:0007080,GO:0007275,GO:0007346,GO:0007369,GO:0007492,GO:0008104,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010389,GO:0010468,GO:0010521,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010639,GO:0010646,GO:0010833,GO:0010941,GO:0010942,GO:0010948,GO:0010950,GO:0010952,GO:0010972,GO:0015630,GO:0016043,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0030111,GO:0030162,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034502,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042127,GO:0042592,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043388,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045862,GO:0045892,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048598,GO:0048646,GO:0048856,GO:0050000,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051336,GO:0051338,GO:0051345,GO:0051348,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051726,GO:0051972,GO:0051974,GO:0052547,GO:0052548,GO:0060249,GO:0060255,GO:0060341,GO:0060828,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070198,GO:0070727,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:0140110,GO:1900180,GO:1900182,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902570,GO:1902679,GO:1902749,GO:1902750,GO:1903047,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903827,GO:1903829,GO:1904356,GO:1904357,GO:1904742,GO:1904744,GO:1904749,GO:1904751,GO:2000112,GO:2000113,GO:2000116,GO:2000278,GO:2000279,GO:2001056,GO:2001141,GO:2001251
EggNOG free text desc.telomerase inhibitor activity
EggNOG OGsKOG2809@1,KOG2809@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000,ko03009,ko03032
Ec32 ortholog descriptionG-patch domain
Ec32 orthologEc-01_006630.1
Exons1
Model size2296
Cds size1014
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig48.12669.1prot_L-elsbetiae_contig48.12669.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig48 26025..27038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816468.904003-UTR-L-elsbetiae_contig48:25972..260241622816468.904003-UTR-L-elsbetiae_contig48:25972..26024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 25973..26024 +
1691683582.1530075-UTR-L-elsbetiae_contig48:25972..260241691683582.1530075-UTR-L-elsbetiae_contig48:25972..26024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 25973..26024 +
1622816468.9297528-UTR-L-elsbetiae_contig48:27038..282681622816468.9297528-UTR-L-elsbetiae_contig48:27038..28268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 27039..28268 +
1691683582.183164-UTR-L-elsbetiae_contig48:27038..282681691683582.183164-UTR-L-elsbetiae_contig48:27038..28268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 27039..28268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816468.9161592-CDS-L-elsbetiae_contig48:26024..270381622816468.9161592-CDS-L-elsbetiae_contig48:26024..27038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 26025..27038 +
1691683582.1737607-CDS-L-elsbetiae_contig48:26024..270381691683582.1737607-CDS-L-elsbetiae_contig48:26024..27038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 26025..27038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig48.12669.1

>prot_L-elsbetiae_contig48.12669.1 ID=prot_L-elsbetiae_contig48.12669.1|Name=mRNA_L-elsbetiae_contig48.12669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=338bp
MATASVEAPRVGDTLNQAWKNDKSKFGLKMLQKMGWTEGKGLGKHEDGVS
EHVKVAKKSNNLGLGATHDASGAAGWASAAVSFNGVLEALGKAYGDGTTG
GGGGKKRNKGDKKAKKKSRKAEKRRKERADNDGAADSSSSGEGGVIASAS
AQAASACPSRARRVKSKDVKGFSAADLRAILGQAATTANPSIPSYPVIGG
GYGGGAAAAAAAAEPKATKKSSSSKKKSKAAPADTPHRPRTRSMDETVAG
EPSKLGKRPRQQQSPDHPEGGKKEAGAKGGAGEAAPAPSSIPTTSKSKKK
TAAAADGAGDGGEEHLTVARSSKEKKRLKRSKKEKDR*
back to top

mRNA from alignment at L-elsbetiae_contig48:25973..28268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig48.12669.1 ID=mRNA_L-elsbetiae_contig48.12669.1|Name=mRNA_L-elsbetiae_contig48.12669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2296bp|location=Sequence derived from alignment at L-elsbetiae_contig48:25973..28268+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCACTCTCTGGTGATCCTTGCCGGCTCCTTCCGACTCCTACTACTGG CCATGGCGACTGCGTCTGTAGAGGCGCCGCGGGTCGGGGACACCCTCAAC CAGGCGTGGAAAAATGACAAGAGCAAGTTCGGCCTCAAGATGCTCCAGAA GATGGGGTGGACGGAGGGCAAAGGCCTCGGCAAGCACGAGGACGGTGTCT CTGAGCACGTCAAGGTGGCCAAGAAGTCCAACAACCTGGGGCTGGGCGCG ACGCACGATGCCTCGGGAGCGGCGGGCTGGGCCAGCGCTGCGGTGAGCTT CAACGGGGTGCTGGAGGCACTGGGAAAGGCATACGGTGACGGTACGACCG GCGGCGGCGGCGGCAAGAAGAGGAACAAGGGCGACAAGAAGGCGAAGAAG AAATCCAGGAAGGCCGAGAAAAGACGAAAAGAGAGAGCAGACAATGACGG CGCCGCCGACAGCAGCAGCAGTGGCGAGGGCGGCGTTATAGCCAGTGCCT CGGCCCAGGCGGCGAGCGCTTGTCCCTCTCGAGCGAGACGCGTCAAGTCC AAGGATGTCAAGGGATTCAGCGCGGCGGACCTTCGGGCCATCCTCGGCCA AGCCGCCACCACCGCGAACCCCTCCATTCCTTCTTACCCTGTAATCGGAG GCGGCTACGGTGGTGGAGCAGCAGCAGCAGCAGCAGCAGCGGAACCGAAG GCAACCAAGAAATCGTCGTCGTCGAAGAAGAAGAGCAAGGCAGCGCCGGC CGACACACCTCACCGCCCGCGCACTCGTTCGATGGACGAAACCGTCGCCG GGGAGCCCTCGAAGCTCGGCAAGAGGCCGAGACAACAGCAGTCCCCTGAC CACCCAGAAGGAGGCAAAAAGGAGGCGGGTGCCAAAGGAGGTGCAGGAGA AGCAGCACCGGCACCAAGTAGCATTCCGACGACGAGCAAATCTAAAAAGA AGACGGCAGCAGCAGCAGACGGAGCGGGGGATGGAGGCGAGGAGCATTTG ACCGTGGCGAGGAGCAGCAAGGAAAAAAAGCGGCTAAAGAGGAGCAAAAA GGAGAAAGATCGGTGACGAGACGGGGGGGATCTCGATGTTGATCGAAAGG AGCACATCTTTGAAAACTGGATGTTTTCGCGAGCAGGGGAGGAGGGGGGG GTGGTTGCGCGGCGGAGCTCCTCAAGACGGCGGCGGTGTGGCGTGCGGTG TGGCATGCGGTGGCGCGTGAGTTTGTGTGTGTTGTCCCCCGTTTTTTCTT TTTTTTGCGTACAGCAGTGGGCTGGTTGTGGACGATGGTGCGATATTCTA CTTGTTGGGCACCTGTAGCTCCCGCTAGCACCCCCGTGGGCGTAATGGCA CTCGAGTGAAACGTCAGAGATTCCCGACGGGATTTAGTGCTTGTCAGAGC CACCATCATCAGATCCACCTGCATGATTTATCCAGAAACTGGTTTTGGTT TCCAATGAAGGCGTTGTCGCCGCCTGGCACCTTTTTTTTGCAGTAGGTAG GATATGTATGCCCGGGTGGGCGCGGATCCGGCGAGCAACCAGGCGGCGAC CTGGCGAAGGCGTGTCTCGTTGCACTAGCCACGGTGCGCGGCGACGTCCA AAAGAGACCCCCCACTCACACACACATCTCCCCTACACATTGCTATTTTT CTACATTTGCTTGAGAAGAAACGCCAGCAGTTGGTGGATGACAGAAAGCC CTCCAGGCGCCTTTTTTCGTTTTACCTGGGCGCTGGCTGCTTCGTACTCC GTATAGCACAGCCGTTTTATTCGGTGACATCGCGAAAGCGGGGGGCTTAG TTTTCCTTTGTCTTTTGCCCGGTGTTTGCAGTTCAGCTGGCTTTCTTCGG TGCGGCTTTGTTATGATCGCTTGGCAGGCAGAGGCATGGGCGACCGCTTC TCTTTGATCCAGGGTTAACGCACGTGCCATAAATACGTTTTCAGGTCTCG CCGTTATGGTCTCCTGCCACATGGCTTGCGTGCTGGAAGCGTCCGGCAGC GCAGCGGCATCTTCTAGCGTTTGTGTTTGTGGCGCACATTCGCGCAGTAG CAGCAGCGCGTGCAATCCACGCCACAGCGTGTGCACGGAAACGTCCATGC CGTTGTTGGTGTTGGTGTTGTTGCTTTTCGGGCGAGGCCCGGCCTACGAT GGACGTCGTCCGAAAAAAGTGTGCGAGGGGCGTGGTTCTGGCACTGCTGC GTCAGTCTCGGCACGAGCATAGCGCCGTTTGACTGTTTGCAGTCTGTCTA TCGTCGAGGTTTTAAAATAAAACAAAGAATCAAAGATGGAACCTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig48:25973..28268+

>mRNA_L-elsbetiae_contig48.12669.1 ID=mRNA_L-elsbetiae_contig48.12669.1|Name=mRNA_L-elsbetiae_contig48.12669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2028bp|location=Sequence derived from alignment at L-elsbetiae_contig48:25973..28268+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACTGCGTCTGTAGAGGCGCCGCGGGTCGGGGACACCCTCAACCA
GGCGTGGAAAAATGACAAGAGCAAGTTCGGCCTCAAGATGCTCCAGAAGA
TGGGGTGGACGGAGGGCAAAGGCCTCGGCAAGCACGAGGACGGTGTCTCT
GAGCACGTCAAGGTGGCCAAGAAGTCCAACAACCTGGGGCTGGGCGCGAC
GCACGATGCCTCGGGAGCGGCGGGCTGGGCCAGCGCTGCGGTGAGCTTCA
ACGGGGTGCTGGAGGCACTGGGAAAGGCATACGGTGACGGTACGACCGGC
GGCGGCGGCGGCAAGAAGAGGAACAAGGGCGACAAGAAGGCGAAGAAGAA
ATCCAGGAAGGCCGAGAAAAGACGAAAAGAGAGAGCAGACAATGACGGCG
CCGCCGACAGCAGCAGCAGTGGCGAGGGCGGCGTTATAGCCAGTGCCTCG
GCCCAGGCGGCGAGCGCTTGTCCCTCTCGAGCGAGACGCGTCAAGTCCAA
GGATGTCAAGGGATTCAGCGCGGCGGACCTTCGGGCCATCCTCGGCCAAG
CCGCCACCACCGCGAACCCCTCCATTCCTTCTTACCCTGTAATCGGAGGC
GGCTACGGTGGTGGAGCAGCAGCAGCAGCAGCAGCAGCGGAACCGAAGGC
AACCAAGAAATCGTCGTCGTCGAAGAAGAAGAGCAAGGCAGCGCCGGCCG
ACACACCTCACCGCCCGCGCACTCGTTCGATGGACGAAACCGTCGCCGGG
GAGCCCTCGAAGCTCGGCAAGAGGCCGAGACAACAGCAGTCCCCTGACCA
CCCAGAAGGAGGCAAAAAGGAGGCGGGTGCCAAAGGAGGTGCAGGAGAAG
CAGCACCGGCACCAAGTAGCATTCCGACGACGAGCAAATCTAAAAAGAAG
ACGGCAGCAGCAGCAGACGGAGCGGGGGATGGAGGCGAGGAGCATTTGAC
CGTGGCGAGGAGCAGCAAGGAAAAAAAGCGGCTAAAGAGGAGCAAAAAGG
AGAAAGATCGGTGAATGGCGACTGCGTCTGTAGAGGCGCCGCGGGTCGGG
GACACCCTCAACCAGGCGTGGAAAAATGACAAGAGCAAGTTCGGCCTCAA
GATGCTCCAGAAGATGGGGTGGACGGAGGGCAAAGGCCTCGGCAAGCACG
AGGACGGTGTCTCTGAGCACGTCAAGGTGGCCAAGAAGTCCAACAACCTG
GGGCTGGGCGCGACGCACGATGCCTCGGGAGCGGCGGGCTGGGCCAGCGC
TGCGGTGAGCTTCAACGGGGTGCTGGAGGCACTGGGAAAGGCATACGGTG
ACGGTACGACCGGCGGCGGCGGCGGCAAGAAGAGGAACAAGGGCGACAAG
AAGGCGAAGAAGAAATCCAGGAAGGCCGAGAAAAGACGAAAAGAGAGAGC
AGACAATGACGGCGCCGCCGACAGCAGCAGCAGTGGCGAGGGCGGCGTTA
TAGCCAGTGCCTCGGCCCAGGCGGCGAGCGCTTGTCCCTCTCGAGCGAGA
CGCGTCAAGTCCAAGGATGTCAAGGGATTCAGCGCGGCGGACCTTCGGGC
CATCCTCGGCCAAGCCGCCACCACCGCGAACCCCTCCATTCCTTCTTACC
CTGTAATCGGAGGCGGCTACGGTGGTGGAGCAGCAGCAGCAGCAGCAGCA
GCGGAACCGAAGGCAACCAAGAAATCGTCGTCGTCGAAGAAGAAGAGCAA
GGCAGCGCCGGCCGACACACCTCACCGCCCGCGCACTCGTTCGATGGACG
AAACCGTCGCCGGGGAGCCCTCGAAGCTCGGCAAGAGGCCGAGACAACAG
CAGTCCCCTGACCACCCAGAAGGAGGCAAAAAGGAGGCGGGTGCCAAAGG
AGGTGCAGGAGAAGCAGCACCGGCACCAAGTAGCATTCCGACGACGAGCA
AATCTAAAAAGAAGACGGCAGCAGCAGCAGACGGAGCGGGGGATGGAGGC
GAGGAGCATTTGACCGTGGCGAGGAGCAGCAAGGAAAAAAAGCGGCTAAA
GAGGAGCAAAAAGGAGAAAGATCGGTGA
back to top