mRNA_L-elsbetiae_contig48.12666.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig48.12666.1
Unique NamemRNA_L-elsbetiae_contig48.12666.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: D7FQB2_ECTSI (Similar to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 2.870e-109
Identity = 181/283 (63.96%), Postives = 206/283 (72.79%), Query Frame = 2 
Query:  185 MFLQDTYNFFDEATFLGVVEDEAQGPAVILDRTIFHPQGGGQPSDQGKITCGSCTFSVDTARDVGGVIHHFGAMSGPPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKDVFIEKLNGELDRLVMADVATVVEIGQGHHHHGSGMAPSSPSLESDPGKGA-GDG-----VVSARAGVAGRAG-PEGVSGGGRGRYGADTRIVAVAGLSCPCGGTHVRSTRELEGVRVTKVKAKKATLRVSYSL 1012
            M+LQDTY    EAT LGVVED++QG A+ILDRTIFHPQGGGQPSD+G ITCG CT  V   RDVGGVI+H+G MSG P    +AGR  SLALD  +RLR AALHSAGHAVD+AVVGAVGAGV  PLKGYHFDDSPYVEY G L  GL KD FIEK N ELD+LVMA++ T+V++     H     + SS S +  P +GA G G     VV+ R G  GR   P   +     +YGA TR V VAGLSCPCGGTHVRSTRE+EGVR+TKVKAKK TLRVSY+L
Sbjct:    1 MYLQDTYLMTSEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVPVSKVRDVGGVIYHYGTMSGTPQPRLEAGRPASLALDSAKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETMVKMAD-QEHGDEAPSSSSSSAQEGPSRGAAGRGREEVTVVAERGGRGGRGKVPASSTAAAATKYGAATRTVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTL 282
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: A0A835Z9X7_9STRA (Alanyl-tRNA editing protein AlaX-M-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X7_9STRA)

HSP 1 Score: 175 bits (443), Expect = 4.360e-49
Identity = 112/280 (40.00%), Postives = 143/280 (51.07%), Query Frame = 2 
Query:  176 TQKMFLQDTYNFFDEATFLGVVEDEAQGPAVILDRTIFHPQGGGQPSDQGKITC-GSCTFSVDTARDVGGVIHHFGAMSGPPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKDVFIEKLNGELDRLVMADVATVVEIGQGHHHHGSGMAPSSPSLESDPGKGAGDGVVSARAGVAGRAGPEGVSGGGRGRYGADTRIVAVAGLSCPCGGTHVRSTRELEGVRVTKVKAKKATLRVSYSL 1012
            T++++LQDTY+    A  + V +D     AV+LDRT+FHPQGGGQP+D+G +       F V   +  G VI HFG   G      Q G  V  ++D  RRL+LA LHSAGHA+D AV  A G   L P KGYHF+D PYVEY GAL+    +   ++KLN EL  L+ A + T V   +                                                     A  R+V+V G +CPCGGTHVRST EL G+RVTK KAK   LRVSY++
Sbjct:    4 TERLYLQDTYSHACSARVVEVRDD-----AVVLDRTVFHPQGGGQPTDRGTLKIHNEVAFVVANVKADGDVILHFG-QHGEGDKKLQTGDEVEASIDLQRRLQLARLHSAGHALDAAVRNA-GFAALKPTKGYHFEDGPYVEYEGALSAD-DRATLVDKLNAELALLIEAAIETAVRQSE-----------------------------------------------------AGLRVVSVGGCACPCGGTHVRSTAELRGLRVTKAKAKSGRLRVSYTI 222
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: A0A7S2G7E6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G7E6_9EUKA)

HSP 1 Score: 157 bits (397), Expect = 9.120e-42
Identity = 113/306 (36.93%), Postives = 149/306 (48.69%), Query Frame = 2 
Query:  128 EPRKAPLRPPPSHFPPTQKMFLQDTYNFFDEATFLGVVED-EAQGPAVILDRTIFHPQGGGQPSDQGKITC--GSCTFSVD-TARDVGGVIHHFGAMSGPPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKDVFIEKLNGELDRLVMADVATVV------EIGQGHHHHGSGMAPSSPSLESDPGKGAGDGVVSARAGVAGRAGPEGVSGGGRGRYGADTRIVAVAGLSCPCGGTHVRSTRELEGVRVTKVKAKKATLRVSYSLI 1015
            +P       P S+ PPT+ ++  DTY F   AT L +  D +  G +V LDRT FHPQGGGQP+DQG I+   G  TF+V   ++D  GV+ H     GP     + G SV+  +D   R + A +HSAGH +D A+  A     L P KGYHF    YVEY G L E   +D  + KL   +D L+   + T V      E+GQ   H      P   +L        G G V                           R+V+V G  CPCGGTHV  T+EL+GV+V  VK+K    R+SYS+I
Sbjct:    4 KPASVAASEPASNLPPTEALYQTDTYLFTASATVLAIGPDAKGTGWSVKLDRTCFHPQGGGQPADQGTISACEGGGTFAVSMVSKDKAGVVSH----DGPEEPSLKVGDSVTCTVDEASRRKNARVHSAGHLIDVAMTNAKCN--LRPTKGYHFTPGSYVEYDGKL-EAAERDALLPKLQASMDELIGQALPTKVLTVDASELGQ---HCPPNALPEDRALW-------GKGWV---------------------------RVVSVGGQGCPCGGTHVYDTKELKGVKVEAVKSKGKITRISYSMI 265
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: A0A7S1TVS7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.440e-41
Identity = 111/292 (38.01%), Postives = 150/292 (51.37%), Query Frame = 2 
Query:  176 TQKMFLQDTYNFFDEATFLGVV------EDEAQGPAVILDRTIFHPQGGGQPSDQGKITCGSCTFSVDTARDVGGVIHHFGAMSG-----PPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKDVFIEKLNGELDRLVMADVAT-VVEIGQGHHHHGSGMAPSSPSLESDPGKGAGDGVVSARAGVAGRAGPEGVSGGGRGRYGADTRIVAVAGL-SCPCGGTHVRSTRELEGVRVTKVKAKKATLRVSYSL 1012
            T++++L DTY F  +A  L V       +D+A   AVILDRT+FH QGGGQP+D G IT     F V   R  G  +HHFG+  G     P ++   AG +V L++D  +R+  A  HSAGHA+D AV    G   +   KGYHF D PYVEY G LA  + K+  ++ LN ++  ++  D+ T V+ +         G   +  S  + P                                    R+V VAG  +CPCGGTHVRST EL GV VTKVK+KK  ++VSYS+
Sbjct:   28 TERLYLLDTYLFEADAAALSVEALEPNPKDDATH-AVILDRTVFHAQGGGQPADLGTITADGAVFEVTGVRSAGDAVHHFGSFRGGDGDAPAAFA--AGAAVHLSVDEVKRVAHARCHSAGHALDVAVARIFGEDWVAG-KGYHFLDGPYVEYIGKLAPEM-KETIVDTLNEKIAEVLSEDIPTEVLYLSPEEAKAACGTPDADFSHITAP----------------------------------TIRVVTVAGGGTCPCGGTHVRSTAELGGVTVTKVKSKKGRIKVSYSV 280
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: A0A7S2WSC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSC3_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.480e-40
Identity = 114/291 (39.18%), Postives = 149/291 (51.20%), Query Frame = 2 
Query:  152 PPPSHFPPTQKMFLQDTYNFFDEATFLGVVEDEAQGPA-VILDRTIFHPQGGGQPSDQGKITCGSCTFSVDTARD--VGGVIHHFGAMSGPPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKDVFIEKLNGELDRLVMADVATVVEIGQGHHHHGSGMAPSSPS-LESDPGKGAGDGVVSARAGVAGRAGPEGVSGGGRGRYGADTRIVAVAGLSCPCGGTHVRSTRELEGVRVTKVKAKKATLRVSYSL 1012
            PPPS    T K++L DTY     A  + V      G   VILD+T+FHPQGGGQP+D+G ++     F V   ++    G++ HFG+M G  S   +AG  V   +D   R   + LHSAGHA+D A+     +G L P KGYHF D+PYVEY G LA    KD   E+L  EL  ++   V + V            +  S+P  LE  PG         A   +     PEG          A  R+V V G  CPCGGTHV +  ELE V VT++KAKK T++VSY +
Sbjct:   41 PPPSGLG-TNKLYLADTYRTETPAVVVEVEPVPESGDLKVILDKTVFHPQGGGQPADKGVLSFPGGEFRVSMVKEDRSTGLVFHFGSM-GSGSGSLEAGTEVDARIDPEWRSVCSRLHSAGHAMDAAMTALAVSG-LTPTKGYHFPDAPYVEYAGTLAAE-EKDSLQERLTNELQSIIEKQVPSKV------------VYLSAPEVLELCPG---------ANVSIF----PEG----------AMIRVVNVGGCWCPCGGTHVGNASELERVTVTRIKAKKGTVKVSYEV 292
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: A0A4D9CZR6_9STRA (AA_TRNA_LIGASE_II_ALA domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZR6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 9.310e-37
Identity = 111/307 (36.16%), Postives = 155/307 (50.49%), Query Frame = 2 
Query:  155 PPSHFPPTQKMFLQDTYNFFDEATFLGVVE---DEAQGP------AVILDRTIFHPQGGGQPSDQGKITC-GSCTFSVDTARDVG--GVIHHFGAMS--------GPPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGAL-AEGLTKDVFIEKLNGELDRLVMADVATVVEIGQGHHHHGSGMAPSSPSLESDPGKGAGDGVVSARAGVAGRAGPEGVSGGGRGRYGADTRIVAVAGLSCPCGGTHVRSTRELEGVRVTKVKAKKATLRVSYSL 1012
            P + +P TQ+ +L DTY +   +T L V     D + G        ++   T+FHPQGGGQPSD G++      TF VD  R VG   +I+H+G           G    P +AG  V L +D  RR   A LHSAGHA+D AV+  +G   L P KGYHF+D P VEY G L A+  + +  IE L  ++  L+  D+AT +        + +  A ++  L          G V+  A       PE           A  R+V+V G  CPCGGTHV+ST+EL GV +T++K KK   ++SY +
Sbjct:    2 PATSYPTTQRRYLNDTYLYDISSTILAVEPVPPDTSAGSNKMPYFGLVTAETVFHPQGGGQPSDVGRVVGENGVTFFVDNVR-VGENAIIYHYGIFKHEMSENEDGARCVPFRAGEKVKLEIDAARRRLHARLHSAGHALDVAVL-RLGL-ELRPTKGYHFEDHPSVEYQGKLPADKGSSERLIEALTLKIQELIEEDIATEL--------YSTSKAEAASMLS---------GGVNDVAHF-----PEE----------AQVRLVSVGGNICPCGGTHVKSTKELGGVEITRIKTKKNVTKISYRI 273
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: L8GVN5_ACACA (Threonine/alanine tRNA ligase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVN5_ACACA)

HSP 1 Score: 142 bits (359), Expect = 3.220e-36
Identity = 100/295 (33.90%), Postives = 138/295 (46.78%), Query Frame = 2 
Query:  176 TQKMFLQDTYNFFDEATFLGVVED-----EAQGP---AVILDRTIFHPQGGGQPSDQGKITCGS---CTFSVDTARDVGGVIHHFGAMSGPPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKDVFIEKLNGELDRLVMADVATVVEIGQGHHH--HGSGMAPSSPSLESDPGKGAGDGVVSARAGVAGRAGPEGVSGGGRGRYGADTRIVAV-AGLSCPCGGTHVRSTRELEGVRVTKVKAKKATLRVSYSLIS 1018
            T++ + +DTY F D A  + V E       A G    AV+LDRTIFHPQGGGQP D G +   +    T S   A    GVI H G  +       QAG  V L +D  +R   A LHSAGH +D+AV        L+P KGYHF D+PYVEY G       +   +++L  E +RL+       V++           G A  S +  ++P                                    R+V V A L CPCGGTHV++T E+  + + K+ AKK  +R+SY+L++
Sbjct:    6 TEQAYWEDTYRFRDTAHVVQVAEHPPPRGSAAGASYFAVVLDRTIFHPQGGGQPFDTGVVASAAGVKFTVSEVRANREDGVIQHIGTFA-EAGTTFQAGDEVELQIDEAKRRLHARLHSAGHLLDKAVANLFPEYNLIPDKGYHFADAPYVEYKGTFVPADKRQSALKRLEDECNRLIAEGSEVTVQVVHSKEEVERLCGSASDSGANPTEP-----------------------------------VRVVTVCAPLGCPCGGTHVQNTGEIGRIAIPKMSAKKGVVRISYTLLA 264
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: A0A2D9ITL3_9FLAO (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2D9ITL3_9FLAO)

HSP 1 Score: 138 bits (347), Expect = 8.140e-35
Identity = 103/281 (36.65%), Postives = 150/281 (53.38%), Query Frame = 2 
Query:  176 TQKMFLQDTYNFFDEATFLGVVEDEAQGPAVILDRTIFHPQGGGQPSDQGKITCGSCTFSVDTARDVG-GVIHHFGAMSGPPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKDVFIEKLNGELDRLVMADVATVVEIGQGHHHHGSGMAPSSPSLESDPGKGAGDGVVSARAGVAGRAGPEGVSGGGRGRYGADTRIVAVAGLS-CPCGGTHVRSTRELEGVRVTKVKAKKATLRVSYSL 1012
            T+ ++LQDTY    EA    ++ D+  G A++LD+TIF+PQGGGQPSD G+I C +  F V   R    G++ H+G  S    W E  G +V L +D  +RL  A +HSAGH +D AV  ++G   L P KG+HF + PYVEY G L +  +   +I  L  +++ LV+ D+    EI QG+             L ++  + A  GV +          PEG S           R+V+  G   C CGGTHV ST+E+  + + K+K KK   R++Y+L
Sbjct:    2 TELIYLQDTYLSTLEARAQELICDDF-GEALVLDKTIFYPQGGGQPSDSGEIVCDTFVFEVSKVRLTNDGLVMHYGEFSSG-GWVE--GLAVELKIDAVKRLVHAKVHSAGHLLDCAV-SSLGLNQLSPTKGFHFPEGPYVEYEGILEDSSS---WIAPLEKKINELVLQDL----EI-QGY------------LLSAE--QAANQGVWA----------PEGKS----------ARVVSFDGFQGCGCGGTHVSSTKEIGELIIRKIKVKKGVTRIAYAL 235
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: A0A6H5JDI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI3_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.320e-34
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 2 
Query:  413 PPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKDVFIEKLNGELDRLVMADVATVVEI 706
            P SW   AGR VSLALD  +RLR A LHSAGHAVD+AV GAVGAGV  PLKGYHFDDSPYVEY G L  GL KD FIEK N ELD+LV+A++ TVV++
Sbjct:    7 PLSW---AGRPVSLALDSAKRLRHAVLHSAGHAVDKAVAGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVVANMETVVKM 101
[Close]
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Match: A0A7S0QZK5_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QZK5_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 2.710e-34
Identity = 98/282 (34.75%), Postives = 141/282 (50.00%), Query Frame = 2 
Query:  173 PTQKMFLQDTYNFFDEATFLGVVEDEAQGPAVILDRTIFHPQGGGQPSDQGKITCGSCTFSVDTARDVGGVIHHFGAMSGPPSWPEQAGRSVSLALDGPRRLRLAALHSAGHAVDRAVVGA-VGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKDVFIEKLNGELDRLVMADVATVVEIGQGHHHHGSGMAPSSPSLESDPGKGAGDGVVSARAGVAGRAGPEGVSGGGRGRYGADTRIVAVA-GLSCPCGGTHVRSTRELEGVRVTKVKAKKATLRVSYSL 1012
            PT+ ++  DTY F   +  L VV+++ +  AV+L  T F+ QGGGQPSD G I     TF+V   R   G ++H+G+     ++  + G  V+L +D  RRL  A LHSAGH +D  +  A  G   L+P KGYHF D+PYVEY G + +    D+ I +LN E   L+ A      E                  L+ D           A A V G   P  ++       G+  RIV +   + CPCGGTHV    E+ G+++T ++ KK   RVSY++
Sbjct:   81 PTKLLYFADTYKFDTSSEVLRVVKEDDR-VAVVLRETNFYAQGGGQPSDVGVIVKNGSTFTVLDVRIKEGTVYHYGSFGDGEAF--ETGAQVTLNVDKERRLLHARLHSAGHLLDCCMTAAGYGPEKLVPTKGYHFPDAPYVEYNGKVDKA-EHDLLIGRLNEEAAGLIAAGAKIRAE-----------------ELDYD-----------AAAAVCGGELPGYIA------KGSAPRIVTIGEDIGCPCGGTHVADASEIRGMQITGIRVKKGVTRVSYTI 324
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig48.12666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB2_ECTSI2.870e-10963.96Similar to ATP binding / alanine-tRNA ligase n=1 T... [more]
A0A835Z9X7_9STRA4.360e-4940.00Alanyl-tRNA editing protein AlaX-M-like protein n=... [more]
A0A7S2G7E6_9EUKA9.120e-4236.93Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S1TVS7_9STRA1.440e-4138.01Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WSC3_9STRA4.480e-4039.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CZR6_9STRA9.310e-3736.16AA_TRNA_LIGASE_II_ALA domain-containing protein n=... [more]
L8GVN5_ACACA3.220e-3633.90Threonine/alanine tRNA ligase subfamily protein n=... [more]
A0A2D9ITL3_9FLAO8.140e-3536.65AA_TRNA_LIGASE_II_ALA domain-containing protein n=... [more]
A0A6H5JDI3_9PHAE2.320e-3470.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0QZK5_9CHLO2.710e-3434.75Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig48contigL-elsbetiae_contig48:5805..11695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.6
Seed ortholog evalue4.1e-88
Seed eggNOG ortholog2880.D7FQB2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Threonyl and Alanyl tRNA synthetase second additional domain
EggNOG OGs2S23F@2759,COG2872@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSimilar to ATP binding / alanine-tRNA ligase
Ec32 orthologEc-01_006770.1
Exons6
Model size1218
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig48.12666.1prot_L-elsbetiae_contig48.12666.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig48 5839..11507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816468.5968091-UTR-L-elsbetiae_contig48:5804..58381622816468.5968091-UTR-L-elsbetiae_contig48:5804..5838Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 5805..5838 +
1691683581.9534457-UTR-L-elsbetiae_contig48:5804..58381691683581.9534457-UTR-L-elsbetiae_contig48:5804..5838Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 5805..5838 +
1622816468.6783693-UTR-L-elsbetiae_contig48:11507..116951622816468.6783693-UTR-L-elsbetiae_contig48:11507..11695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 11508..11695 +
1691683582.028594-UTR-L-elsbetiae_contig48:11507..116951691683582.028594-UTR-L-elsbetiae_contig48:11507..11695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig48 11508..11695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816468.6069841-CDS-L-elsbetiae_contig48:5838..60221622816468.6069841-CDS-L-elsbetiae_contig48:5838..6022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 5839..6022 +
1691683581.9679136-CDS-L-elsbetiae_contig48:5838..60221691683581.9679136-CDS-L-elsbetiae_contig48:5838..6022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 5839..6022 +
1622816468.6163208-CDS-L-elsbetiae_contig48:7549..76541622816468.6163208-CDS-L-elsbetiae_contig48:7549..7654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 7550..7654 +
1691683581.9811766-CDS-L-elsbetiae_contig48:7549..76541691683581.9811766-CDS-L-elsbetiae_contig48:7549..7654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 7550..7654 +
1622816468.626349-CDS-L-elsbetiae_contig48:8592..86991622816468.626349-CDS-L-elsbetiae_contig48:8592..8699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 8593..8699 +
1691683581.9899797-CDS-L-elsbetiae_contig48:8592..86991691683581.9899797-CDS-L-elsbetiae_contig48:8592..8699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 8593..8699 +
1622816468.6376135-CDS-L-elsbetiae_contig48:9691..99101622816468.6376135-CDS-L-elsbetiae_contig48:9691..9910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 9692..9910 +
1691683581.9986289-CDS-L-elsbetiae_contig48:9691..99101691683581.9986289-CDS-L-elsbetiae_contig48:9691..9910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 9692..9910 +
1622816468.6504638-CDS-L-elsbetiae_contig48:10380..104431622816468.6504638-CDS-L-elsbetiae_contig48:10380..10443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 10381..10443 +
1691683582.007627-CDS-L-elsbetiae_contig48:10380..104431691683582.007627-CDS-L-elsbetiae_contig48:10380..10443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 10381..10443 +
1622816468.6635344-CDS-L-elsbetiae_contig48:11189..115071622816468.6635344-CDS-L-elsbetiae_contig48:11189..11507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 11190..11507 +
1691683582.0175369-CDS-L-elsbetiae_contig48:11189..115071691683582.0175369-CDS-L-elsbetiae_contig48:11189..11507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig48 11190..11507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig48.12666.1

>prot_L-elsbetiae_contig48.12666.1 ID=prot_L-elsbetiae_contig48.12666.1|Name=mRNA_L-elsbetiae_contig48.12666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=332bp
MTSASDLTLATTARFSVFELENPARVEIIEEEPRKAPLRPPPSHFPPTQK
MFLQDTYNFFDEATFLGVVEDEAQGPAVILDRTIFHPQGGGQPSDQGKIT
CGSCTFSVDTARDVGGVIHHFGAMSGPPSWPEQAGRSVSLALDGPRRLRL
AALHSAGHAVDRAVVGAVGAGVLLPLKGYHFDDSPYVEYGGALAEGLTKD
VFIEKLNGELDRLVMADVATVVEIGQGHHHHGSGMAPSSPSLESDPGKGA
GDGVVSARAGVAGRAGPEGVSGGGRGRYGADTRIVAVAGLSCPCGGTHVR
STRELEGVRVTKVKAKKATLRVSYSLISARA*
back to top

mRNA from alignment at L-elsbetiae_contig48:5805..11695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig48.12666.1 ID=mRNA_L-elsbetiae_contig48.12666.1|Name=mRNA_L-elsbetiae_contig48.12666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5891bp|location=Sequence derived from alignment at L-elsbetiae_contig48:5805..11695+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTGCATGGCATTGCACCAGATAAATCCTGGACATGACCTCTGCATCAG
ATCTAACCCTTGCTACCACTGCAAGATTTTCTGTGTTCGAGCTTGAAAAC
CCAGCCAGGGTTGAGATAATTGAAGAAGAGCCGCGAAAGGCGCCGCTACG
GCCACCACCGAGTCATTTTCCTCCGACACAAAAAATGTTTCTACAGGACA
CGTACAACTTCTTTGATGGTAAGGATTAGGATTTGATCGCGTTAATCTGA
GGACTATGAACTATTCGCCTTTATGTGCTGGTTGGGTGTCTGTAGATACT
CGGCAGCTCGACACAAAAACTTTGATCAACATATCTACATACGGAAGATA
CCATAGGCGCCATTCGCGGTTGACCGTCATGGATTTTTTCAAGTCGGGTT
TATGAACGAACCATTCACGGCTAAGCTCCAAAAATTTGCACACACTTTTG
ATAGGTCACCCGGATTACGAAAATATACATTTTTTCATATTTGGCCATTT
CGGTGGTGAGTTATTCACGATTAAGTGGGTAAATATCGAAAACCAATCGC
GTCTGCGGGCCCCCCGAGGAAATTTCAACCCCCTGCGAATTGCATGAAAT
TTTCAGGGATGACCGATGTCGCATTGCTGAACATGTTTCCGAAGTCAGAA
ACAAAATGCCAACATTTCTGCTCTACTTGCGTCGCTTCAAAGGTTATGCA
AGAAAGCGGGGAAAACTTGGGATTATACCGGAGTTACTGTGAAATATCCT
TTCCCCAGGCATGCGTTCCACATGTTGATGTAAGCTCTACAGATTTTATT
CCAGGCTAATTTTGGGTCGGGGATCACGAACATATCATCAGAATACTCTT
ATTCGGCATTGCAATCGACTTATCGGTGTGCAAATGCTGGGCATCAGTGA
GCAATTTCAAGGATTCCTGAGAAATTTGATATCCTCCTGCCACAGTAGTG
AGTTTTTCTCTGGTTGACTTTCTGAGTGGCTCCATCCCCCCTAAATTGGC
CAAGCGGAATCGATTGGCGAGGTGACACAAAAAAAAAAAGTTCGGGAATG
CCTCGAAAAAAAAATAGAGTCGAAGGGGACGGGTTTTTTTTTGGGTCAAC
TTCTTAGACACCGTTTTTGAGCGTTTTAGAGCGAACCACGAAGTCGATTT
TTTTTTTTTCTTCTTCGTCAGTGTGGCACAGCCAATGACGGTCAACCGCG
GATGGCGCCCATACATACCCCATACACCCCCGCCAAAACGGCTTGTTGAT
TTTGTGCCACTGCTGCTGTGTCGGGGCGGTGAAGGGGAGTTAGCGTGTCG
ACCACGGTCAGCCCCCCCGGAGCACCGTTTTTCATAAGCTGGACGTATAT
CTAGACGGCTGGCGTTCAGGGGAAAAAAACGAAAATAAATGCAAAAATTG
TAAAAATCATCCCATCCCGCCTGCGGCCGAGCCCGATCCATCCGTGCACC
ACAGGTAGCGATATCTACATATTAGTCTATGTATGTACTTCGAAGTAGTA
GATAGATAGCATAGAAACAGGAAATTTTACTCTCGGAATTTGAGTAGAAG
GGGGGTAAGGTGTCCGGACGATTCGCCTGATTTCTGCGGGCAGGCTTCCG
AGAAGCACGACTACGAAAACACGTCGCCGGCGTCCAGCTAGTGCGTCACA
TCCCACCACAAGCACGTATGTACTGCTGGGATCATCCCTCGGTCGCATCG
GTGTCTCCTTTTGAACGGCCTCGCCTCGCCTGTCCCGATCGACAGAGGCG
ACTTTTTTAGGCGTCGTTGAAGACGAGGCGCAAGGGCCGGCAGTTATCTT
GGACCGAACAATATTTCACCCCCAGGGCGGAGGCCAACCATCCGACCAAG
GTGAGCGAGATAAAGTCTAGACACTACATTTTACAGCCAGTTCTACCGAG
GGCGAAGCAGCTCAGGCCTGTTGTTATGGTACATACATTCCAAATCGGAA
TTCGCGGGGGGCGCTGATGATTTTTTTTTCCGGGCGACGGGGGCTTTCTC
AGTTGGAATCCGTGAAAAGGATCATTTTCGCTGAACGCTCGCCTCACAGA
GATCTGTTTGCAGTCTAGCCTTCGCTGGCTACCGTGTGCTCCATTGGTGT
GACTACTGCCTCGGAGCCACATTTGGGGAGCAATGGATAGAGGTATGGAT
CTCGCACGCTTTGAAACCAAGGAATTCCAAACTGGAATTGCGGAGGTCCT
CGCGTTGGAGAATGGAAGCCCCCGTTCATACCCCACAAAAACTCGAATGT
CCACCCCCCCCGGATTCCAATTTGGAATCTACACCATAACGTTTGGCCTC
ATGGCGGCCCCTGTCTTGTGTACAGATAGATATTGGTGCAGAAAATACTC
CTGCCATTGCTGCGGTACAGTAGGTAGCAGCTTTTAACAGGTTAGCTACC
TTTTTGTGCCACTCTTGGCCCTGTCGCTTGGTGGAGGAAGTACATATGTG
TCACGTTCCCAAAATGGTTGTATCCTTCAAATATGTAGGTATGTACATGC
CACAAGTTCGTGCGAAACGCTCCGACAAACTGCTGATCGATCAAATCAGC
GGACCACCCCCCCCCCCCCCCCCCACTCTCCTTTCCTTTTTTTTTTTTTT
TTTTTTTGTTTTTCGAAAAAAAAATTCGGGGTTTGATACCTTCTCGGCGG
CNNNNNNNNNNTATGTTTTTCCACCCCCCAAATTTGGGGGAAACGCCCGA
ACAATATTGTTAGCACCCAACACCGGGGCCCCCCCCCCCCCCCCTCTCAA
TTGTCTTGCACTTTTTTTTTTTTTGCACGTATGTACAGGAAAAATCACGT
GCGGGTCATGTACCTTCAGCGTGGACACGGCGAGGGATGTGGGGGGAGTC
ATCCACCATTTTGGAGCCATGTCGGGGCCGCCCTCTTGGCCAGAGGTACA
TACGCGATCGACACGTGCATACCTACATTTAAGTACGTGCCAACACACAC
ACCCTCACCGCCGCGGCACCGGTGCTTGCGGGAAGTGTCATGAGCGTATG
TACGTAGCGTATTTTCATCTTCCGCGCCCCAAGTCTCGTGGCGGGCGGGA
CGGGCGCAGGACAATAACCAAAGGAGCGCAAAACACGACTTGACGCCGGA
TGAGATTCGGACGAACACGGGCGGACGGGCCATCTCGCGCAATTTTTTTT
CTGTATGCATGTCTTCGGTGTACAACACGCACATATCTAACAATAAAAAG
TTGCCTTATCTGCTTCCCACCACCCCTACACCGACCGGTGATCCGTGGCG
CAAGACCCCCTGCCTTAGCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCCCATGAGGCAGAGGATTTGATTCTCAAGGGATGCTCGTT
GTTGATGTTATTTTGTCGGCAACCTCAAAAATATGACGCGCTTCGAAGTA
AACAGTCAGTTTCTTGTGCTTGCTGTTGGTGTTGAAGGGGGCCGAGACAC
GTCTTTCAAGACCAGAAACAAGCTTGGGCTGGGCTGGGCTGGGCTGGGCT
GGGCTGAGCTGGGCCCAGTGCGCGAATTTCTTTCTAAATACCACTGCCGC
TGCCACGGCAGAGAGCAACAACGAGTAGCGTCCCGTACACACAACACCGT
ATTTTCTCTGTTGCCGTCGGTCGGTCAACGCGTTGATTTGAGACGAGGCA
GAGGCCACAACCAAAATGGACGTTTTTTTTTAATTAATGTACTAATGTAT
CTATTATGCAAATGTCAGCAGTCTACCCACGTCCAGTCTGCGAAACATGG
AAAGAGGCGTTCCGGAGGGACTGCTGTTGTAAGCCTACATGCTATAACCC
CCTGTTTCCCCATCTTTTTGTTGCCGCTTTTTCTATTCTTCGCGGTGTGT
GCGTGCGTGCGTGCGCGCGCGGCGGCGGCGTGCGAAGCAGGCGGGACGGT
CGGTGTCGCTGGCGCTCGACGGCCCCAGGCGGCTGCGGCTCGCGGCCCTG
CACTCGGCGGGGCACGCCGTCGACAGGGCCGTGGTCGGGGCGGTAGGCGC
GGGCGTGCTCCTGCCCCTCAAGGGCTACCACTTCGACGACTCGCCCTACG
TCGAGTACGGAGGCGCGTTGGCCGAGGGCCTGACCAAGGATGTGTTCATC
GAAAAGGTGTGGTGCATGAACGCCTAAATAAATGAGTAAATATGGCACCG
CCAGAAAGCAGGCGGTTCTGGGAGAGACCGAGAGCAGTTATCGGCTGGGG
CCTGCTTGCATTTGCTGGTTGGTTTTGGAGGACGATTTTACGATTTTACA
ACAGCCCTGGTGCGCTGCTGCTGCTATTTATGTGTGCGTGTTGTGCCCGA
GGGAGTCGGGTTGGAGTTGGAGAGGGGGGGGGGCGATCTGTTTTGCCGAC
AAAGTCGTGTTTTTTCTGTCTTGTTGTTCCATCTACATAGCTTTAGCTTT
CTACGTGTACATATTTATAACTAGGCTGAGCGGAGGGTGCGCTGACTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGCCGCGAAGCAGCGCCCC
AACTTAACCTCGACTTGTACACAACCTCCTTACGCTGTTCGTCGTGGGGG
TTGTTTTTTTAACACCGCGAGCCCAGTTGAACGGCGAGCTCGACAGGCTC
GTGATGGCGGACGTGGCGACCGTGGTTGAGATCGGCCAGGTGAGAGGTAG
GCGCAGGGAGGGCGGCCATGTATGATGAAACTGCAGGCCCGCTCTTGCAG
ATGACCTCGCCTAGATGTGACGGATACGTATACATAAATGTATGTGTCTT
ATATGTATGTGGTCATGCATGAGTGTATATGTACACCTGCGGAGCTGCTG
AACAGCAGCTTCAATCAGAGTTGTGCTGCCACGAAATGCACCACGGCAAA
TTGCAGTACAAACACAGCCAACCACACGCGAGATCACTTTTTTTTTATGG
GCCGCTCGCACAAGAGGGTACCAGCACCAAACGGCACATTTTCGGACAGC
CCTCGACCAGGTTTGTCGAACGCCCCCCCTTTCGGCGCTGGCACTCTTTT
TGCTGGGGAGGAATCGAGCTTTGAAAATCTGTCTCCAGGGGGGGTGGTAT
CTTGTGTCACTTACGGTGTTCACAGGTTTTTATTTTACTTCCATGGGCTG
AATAGAGGTTTGGTGTAAATGCAGCGCTCTTGTGCGCCCTCCCGGGCTTG
TGCTGCTCCTACACACCCGTGGGCCAGTCAGCTACCGAGGTCCAACGCGT
TGTGATTTCACGCGCAGGTTCGTGTCCTGCCGACGACGCCTATAGTATTA
AGGGACTAGACCACTTCAAGAAGCCATGAGGTAAAAGATTAACTAAGGTA
CTAGACTGAATGGCGTCGAAGCATAACACTATCTGCCGCTGAGGTGCGTT
TCATCTGCTCGCCCCTTTCGCACGCTTCATTTCAGGGCCACCACCACCAT
GGCAGCGGCATGGCTCCATCATCGCCATCACTCGAGAGCGATCCAGGAAA
GGGGGCAGGAGACGGTGTAGTATCAGCACGCGCGGGAGTAGCGGGACGAG
CAGGACCGGAAGGGGTATCGGGGGGAGGAAGGGGGCGGTACGGCGCCGAT
ACGCGCATCGTGGCGGTGGCCGGTCTCTCCTGTCCCTGCGGCGGAACCCA
CGTGAGGAGCACCCGAGAGCTGGAGGGCGTGCGCGTGACGAAAGTGAAGG
CCAAGAAGGCCACTCTTCGTGTCAGCTATTCGCTGATCTCTGCTCGTGCG
TAGATAGCAGCGTCGGCGTGTCGTTCGATTTGTAAAGCAGTGGACTTGTT
TCTGGATAAAAGTAGAATTACGGAACCATCGTCACCGACCGTGGGGTTTG
TTGTTTGTGTGTGTGTGTGTGTGCGTACATGTGTGTGTACATGTAAGTGT
TTCAAGGTTCTTGGTGTGTTTTGTTATAATTGTTTTTGTTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig48:5805..11695+

>mRNA_L-elsbetiae_contig48.12666.1 ID=mRNA_L-elsbetiae_contig48.12666.1|Name=mRNA_L-elsbetiae_contig48.12666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1992bp|location=Sequence derived from alignment at L-elsbetiae_contig48:5805..11695+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCTCTGCATCAGATCTAACCCTTGCTACCACTGCAAGATTTTCTGT
GTTCGAGCTTGAAAACCCAGCCAGGGTTGAGATAATTGAAGAAGAGCCGC
GAAAGGCGCCGCTACGGCCACCACCGAGTCATTTTCCTCCGACACAAAAA
ATGTTTCTACAGGACACGTACAACTTCTTTGATGATGACCTCTGCATCAG
ATCTAACCCTTGCTACCACTGCAAGATTTTCTGTGTTCGAGCTTGAAAAC
CCAGCCAGGGTTGAGATAATTGAAGAAGAGCCGCGAAAGGCGCCGCTACG
GCCACCACCGAGTCATTTTCCTCCGACACAAAAAATGTTTCTACAGGACA
CGTACAACTTCTTTGATGAGGCGACTTTTTTAGGCGTCGTTGAAGACGAG
GCGCAAGGGCCGGCAGTTATCTTGGACCGAACAATATTTCACCCCCAGGG
CGGAGGCCAACCATCCGACCAAGAGGCGACTTTTTTAGGCGTCGTTGAAG
ACGAGGCGCAAGGGCCGGCAGTTATCTTGGACCGAACAATATTTCACCCC
CAGGGCGGAGGCCAACCATCCGACCAAGGAAAAATCACGTGCGGGTCATG
TACCTTCAGCGTGGACACGGCGAGGGATGTGGGGGGAGTCATCCACCATT
TTGGAGCCATGTCGGGGCCGCCCTCTTGGCCAGAGGAAAAATCACGTGCG
GGTCATGTACCTTCAGCGTGGACACGGCGAGGGATGTGGGGGGAGTCATC
CACCATTTTGGAGCCATGTCGGGGCCGCCCTCTTGGCCAGAGCAGGCGGG
ACGGTCGGTGTCGCTGGCGCTCGACGGCCCCAGGCGGCTGCGGCTCGCGG
CCCTGCACTCGGCGGGGCACGCCGTCGACAGGGCCGTGGTCGGGGCGGTA
GGCGCGGGCGTGCTCCTGCCCCTCAAGGGCTACCACTTCGACGACTCGCC
CTACGTCGAGTACGGAGGCGCGTTGGCCGAGGGCCTGACCAAGGATGTGT
TCATCGAAAAGCAGGCGGGACGGTCGGTGTCGCTGGCGCTCGACGGCCCC
AGGCGGCTGCGGCTCGCGGCCCTGCACTCGGCGGGGCACGCCGTCGACAG
GGCCGTGGTCGGGGCGGTAGGCGCGGGCGTGCTCCTGCCCCTCAAGGGCT
ACCACTTCGACGACTCGCCCTACGTCGAGTACGGAGGCGCGTTGGCCGAG
GGCCTGACCAAGGATGTGTTCATCGAAAAGTTGAACGGCGAGCTCGACAG
GCTCGTGATGGCGGACGTGGCGACCGTGGTTGAGATCGGCCAGTTGAACG
GCGAGCTCGACAGGCTCGTGATGGCGGACGTGGCGACCGTGGTTGAGATC
GGCCAGGGCCACCACCACCATGGCAGCGGCATGGCTCCATCATCGCCATC
ACTCGAGAGCGATCCAGGAAAGGGGGCAGGAGACGGTGTAGTATCAGCAC
GCGCGGGAGTAGCGGGACGAGCAGGACCGGAAGGGGTATCGGGGGGAGGA
AGGGGGCGGTACGGCGCCGATACGCGCATCGTGGCGGTGGCCGGTCTCTC
CTGTCCCTGCGGCGGAACCCACGTGAGGAGCACCCGAGAGCTGGAGGGCG
TGCGCGTGACGAAAGTGAAGGCCAAGAAGGCCACTCTTCGTGTCAGCTAT
TCGCTGATCTCTGCTCGTGCGTAGGGCCACCACCACCATGGCAGCGGCAT
GGCTCCATCATCGCCATCACTCGAGAGCGATCCAGGAAAGGGGGCAGGAG
ACGGTGTAGTATCAGCACGCGCGGGAGTAGCGGGACGAGCAGGACCGGAA
GGGGTATCGGGGGGAGGAAGGGGGCGGTACGGCGCCGATACGCGCATCGT
GGCGGTGGCCGGTCTCTCCTGTCCCTGCGGCGGAACCCACGTGAGGAGCA
CCCGAGAGCTGGAGGGCGTGCGCGTGACGAAAGTGAAGGCCAAGAAGGCC
ACTCTTCGTGTCAGCTATTCGCTGATCTCTGCTCGTGCGTAG
back to top