mRNA_L-elsbetiae_contig21682.6642.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21682.6642.1
Unique NamemRNA_L-elsbetiae_contig21682.6642.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21682.6642.1 vs. uniprot
Match: A0A6H5KPA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPA0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.730e-11
Identity = 26/36 (72.22%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   16 RRGNEHFVAKRYAEAIECYSRAIDISASNHILFGNR 123
            +RGNEHF+AKR+ EA+ECYS+AI +SASNH+L+GNR
Sbjct:   24 QRGNEHFMAKRHKEAVECYSQAISLSASNHVLYGNR 59
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BLAST of mRNA_L-elsbetiae_contig21682.6642.1 vs. uniprot
Match: D7G815_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G815_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.730e-11
Identity = 26/36 (72.22%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   16 RRGNEHFVAKRYAEAIECYSRAIDISASNHILFGNR 123
            +RGNEHF+AKR+ EA+ECYS+AI +SASNH+L+GNR
Sbjct:   24 QRGNEHFMAKRHKEAVECYSQAISLSASNHVLYGNR 59
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BLAST of mRNA_L-elsbetiae_contig21682.6642.1 vs. uniprot
Match: A0A7S1MBP5_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MBP5_NEODS)

HSP 1 Score: 49.7 bits (117), Expect = 9.340e-6
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   19 RGNEHFVAKRYAEAIECYSRAIDISASNHILFGNR 123
            +GNEHF AK + EAIE +++AI++  SNH+L+ NR
Sbjct:    9 KGNEHFSAKNFPEAIEAFTKAIELDGSNHVLYSNR 43
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BLAST of mRNA_L-elsbetiae_contig21682.6642.1 vs. uniprot
Match: A0A7R9W7N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7N9_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 3.900e-5
Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   22 GNEHFVAKRYAEAIECYSRAIDISASNHILFGNR 123
            GN+ F +K Y  AIECY+ AI I ASNH+ F NR
Sbjct:   22 GNKAFASKDYTTAIECYTEAIKIDASNHVYFSNR 55
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BLAST of mRNA_L-elsbetiae_contig21682.6642.1 vs. uniprot
Match: UPI00140370B1 (E3 ubiquitin-protein ligase TTC3 isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI00140370B1)

HSP 1 Score: 47.8 bits (112), Expect = 4.460e-5
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   10 CNRRGNEHFVAKRYAEAIECYSRAIDISASNHILFGNR 123
            C  RGN+ F  + Y  A++ YSRAID+S  N IL+GNR
Sbjct:  183 CRERGNKEFKKENYEAAVKLYSRAIDLSPDNEILYGNR 220
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BLAST of mRNA_L-elsbetiae_contig21682.6642.1 vs. uniprot
Match: A0A0S4IP08_BODSA (Stress-inducible protein STI1, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4IP08_BODSA)

HSP 1 Score: 47.8 bits (112), Expect = 4.470e-5
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   19 RGNEHFVAKRYAEAIECYSRAIDISASNHILFGNR 123
            +GNE F AK Y EAIE +++AI++  SNH+LF NR
Sbjct:    9 KGNEAFSAKNYPEAIEYFTKAIELDGSNHVLFSNR 43
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BLAST of mRNA_L-elsbetiae_contig21682.6642.1 vs. uniprot
Match: A0A812WUE0_9DINO (HOP3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WUE0_9DINO)

HSP 1 Score: 47.4 bits (111), Expect = 6.120e-5
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   19 RGNEHFVAKRYAEAIECYSRAIDISASNHILFGNR 123
            +GN   V+K++ EAI+CY++AI++ ASNH+ F NR
Sbjct:   10 KGNAAIVSKQFQEAIDCYTKAIELDASNHVYFSNR 44
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21682.6642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KPA0_9PHAE2.730e-1172.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G815_ECTSI8.730e-1172.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1MBP5_NEODS9.340e-654.29Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
A0A7R9W7N9_9STRA3.900e-558.82Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
UPI00140370B14.460e-552.63E3 ubiquitin-protein ligase TTC3 isoform X1 n=2 Ta... [more]
A0A0S4IP08_BODSA4.470e-557.14Stress-inducible protein STI1, putative n=1 Tax=Bo... [more]
A0A812WUE0_9DINO6.120e-551.43HOP3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21682contigL-elsbetiae_contig21682:281..403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2e-08
Seed eggNOG ortholog2880.D7G815
KEGG koko:K09553
KEGG Pathwayko05020,map05020
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815883.8224146-CDS-L-elsbetiae_contig21682:280..4031622815883.8224146-CDS-L-elsbetiae_contig21682:280..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21682 281..403 -
1691683167.241485-CDS-L-elsbetiae_contig21682:280..4031691683167.241485-CDS-L-elsbetiae_contig21682:280..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21682 281..403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21682.6642.1prot_L-elsbetiae_contig21682.6642.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21682 281..403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21682.6642.1

>prot_L-elsbetiae_contig21682.6642.1 ID=prot_L-elsbetiae_contig21682.6642.1|Name=mRNA_L-elsbetiae_contig21682.6642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=41bp
IFPCNRRGNEHFVAKRYAEAIECYSRAIDISASNHILFGNR
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mRNA from alignment at L-elsbetiae_contig21682:281..403-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21682.6642.1 ID=mRNA_L-elsbetiae_contig21682.6642.1|Name=mRNA_L-elsbetiae_contig21682.6642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=123bp|location=Sequence derived from alignment at L-elsbetiae_contig21682:281..403- (Laminarionema elsbetiae ELsaHSoW15)
ATCTTCCCTTGCAACAGACGGGGCAACGAGCACTTCGTGGCCAAGCGGTA
TGCCGAAGCTATCGAGTGCTACAGCCGGGCCATCGACATCAGCGCTTCCA
ATCACATCTTATTCGGCAACAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21682:281..403-

>mRNA_L-elsbetiae_contig21682.6642.1 ID=mRNA_L-elsbetiae_contig21682.6642.1|Name=mRNA_L-elsbetiae_contig21682.6642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig21682:281..403- (Laminarionema elsbetiae ELsaHSoW15)
ATCTTCCCTTGCAACAGACGGGGCAACGAGCACTTCGTGGCCAAGCGGTA
TGCCGAAGCTATCGAGTGCTACAGCCGGGCCATCGACATCAGCGCTTCCA
ATCACATCTTATTCGGCAACAGGATCTTCCCTTGCAACAGACGGGGCAAC
GAGCACTTCGTGGCCAAGCGGTATGCCGAAGCTATCGAGTGCTACAGCCG
GGCCATCGACATCAGCGCTTCCAATCACATCTTATTCGGCAACAGG
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