mRNA_L-elsbetiae_contig21674.6638.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21674.6638.1
Unique NamemRNA_L-elsbetiae_contig21674.6638.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21674.6638.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.930e-5
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  179 SECYHHGCTKRPRYGVEGSKA-ELCTQHATEGMVNVVTKK 295
            S+C H  CTKRP YGV GSK  E C+QHA +GMVNV  K+
Sbjct:   62 SQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
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BLAST of mRNA_L-elsbetiae_contig21674.6638.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 7.630e-5
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  179 SECYHHGCTKRPRYGVEGSKA-ELCTQHATEGMVNVVTKK 295
            S+C H  CTKRP YGV GSK  E C+QHA +GMVNV  K+
Sbjct:    2 SQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21674.6638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE4.930e-562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI7.630e-562.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21674contigL-elsbetiae_contig21674:839..1577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size740
Cds size567
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815883.5101933-UTR-L-elsbetiae_contig21674:838..10101622815883.5101933-UTR-L-elsbetiae_contig21674:838..1010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21674 839..1010 +
1691683167.021615-UTR-L-elsbetiae_contig21674:838..10101691683167.021615-UTR-L-elsbetiae_contig21674:838..1010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21674 839..1010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815883.520195-CDS-L-elsbetiae_contig21674:1010..15771622815883.520195-CDS-L-elsbetiae_contig21674:1010..1577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21674 1011..1577 +
1691683167.0319076-CDS-L-elsbetiae_contig21674:1010..15771691683167.0319076-CDS-L-elsbetiae_contig21674:1010..1577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21674 1011..1577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21674.6638.1prot_L-elsbetiae_contig21674.6638.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21674 1011..1577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21674.6638.1

>prot_L-elsbetiae_contig21674.6638.1 ID=prot_L-elsbetiae_contig21674.6638.1|Name=mRNA_L-elsbetiae_contig21674.6638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
MPSECYHHGCTKRPRYGVEGSKAELCTQHATEGMVNVVTKKCGHQGCNVR
PSYGMKGTKKAELCSQHARGGMVDVVSKRCGHPGCNKGPSYGVEGTNKAE
LFSQHAREGMVNVVNKRCGHPGCNKGPSYGVEGTNKAELCSQHAREGMVN
VVSKRCGHQGCNTKPSYGVEGTKTAELCSQHAREGMVDV
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mRNA from alignment at L-elsbetiae_contig21674:839..1577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21674.6638.1 ID=mRNA_L-elsbetiae_contig21674.6638.1|Name=mRNA_L-elsbetiae_contig21674.6638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=739bp|location=Sequence derived from alignment at L-elsbetiae_contig21674:839..1577+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGACTCAATGGACAATGACCCACCCTCGGTGCCCCCGCTCCCTGCAGG
TCGCATCGCCGACTGAATTAAAGCGCTTTATGTCATTGTCCATAGCACGC
CGAGAGGCGTGACTCTCCACGTACAAGCAGGCGAAGAATTGCAGAGGCAG
GCAAACTGGAAGAAAATAAAAGATGCCCAGTGAGTGCTACCACCATGGGT
GTACCAAGAGGCCGAGATATGGTGTTGAAGGAAGCAAGGCTGAGCTCTGC
ACCCAACATGCCACCGAGGGAATGGTGAACGTCGTGACGAAGAAATGTGG
CCACCAAGGATGCAACGTAAGACCATCGTATGGCATGAAAGGCACCAAGA
AGGCTGAACTCTGCTCTCAGCACGCCAGGGGGGGGATGGTGGATGTGGTC
AGCAAGAGGTGTGGCCACCCAGGGTGCAACAAGGGCCCGTCGTACGGCGT
GGAAGGCACCAACAAGGCTGAACTCTTCTCTCAGCACGCCAGGGAGGGGA
TGGTGAACGTGGTCAACAAGAGGTGTGGCCACCCAGGGTGCAACAAGGGC
CCGTCGTACGGCGTGGAAGGCACCAACAAGGCTGAACTCTGCTCTCAACA
CGCAAGGGAGGGGATGGTGAACGTGGTCAGCAAGAGGTGTGGGCACCAAG
GGTGCAACACAAAACCGTCGTACGGCGTCGAAGGCACCAAGACGGCTGAG
CTCTGCTCTCAGCACGCGAGGGAGGGGATGGTGGACGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21674:839..1577+

>mRNA_L-elsbetiae_contig21674.6638.1 ID=mRNA_L-elsbetiae_contig21674.6638.1|Name=mRNA_L-elsbetiae_contig21674.6638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig21674:839..1577+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCAGTGAGTGCTACCACCATGGGTGTACCAAGAGGCCGAGATATGG
TGTTGAAGGAAGCAAGGCTGAGCTCTGCACCCAACATGCCACCGAGGGAA
TGGTGAACGTCGTGACGAAGAAATGTGGCCACCAAGGATGCAACGTAAGA
CCATCGTATGGCATGAAAGGCACCAAGAAGGCTGAACTCTGCTCTCAGCA
CGCCAGGGGGGGGATGGTGGATGTGGTCAGCAAGAGGTGTGGCCACCCAG
GGTGCAACAAGGGCCCGTCGTACGGCGTGGAAGGCACCAACAAGGCTGAA
CTCTTCTCTCAGCACGCCAGGGAGGGGATGGTGAACGTGGTCAACAAGAG
GTGTGGCCACCCAGGGTGCAACAAGGGCCCGTCGTACGGCGTGGAAGGCA
CCAACAAGGCTGAACTCTGCTCTCAACACGCAAGGGAGGGGATGGTGAAC
GTGGTCAGCAAGAGGTGTGGGCACCAAGGGTGCAACACAAAACCGTCGTA
CGGCGTCGAAGGCACCAAGACGGCTGAGCTCTGCTCTCAGCACGCGAGGG
AGGGGATGGTGGACGTGATGCCCAGTGAGTGCTACCACCATGGGTGTACC
AAGAGGCCGAGATATGGTGTTGAAGGAAGCAAGGCTGAGCTCTGCACCCA
ACATGCCACCGAGGGAATGGTGAACGTCGTGACGAAGAAATGTGGCCACC
AAGGATGCAACGTAAGACCATCGTATGGCATGAAAGGCACCAAGAAGGCT
GAACTCTGCTCTCAGCACGCCAGGGGGGGGATGGTGGATGTGGTCAGCAA
GAGGTGTGGCCACCCAGGGTGCAACAAGGGCCCGTCGTACGGCGTGGAAG
GCACCAACAAGGCTGAACTCTTCTCTCAGCACGCCAGGGAGGGGATGGTG
AACGTGGTCAACAAGAGGTGTGGCCACCCAGGGTGCAACAAGGGCCCGTC
GTACGGCGTGGAAGGCACCAACAAGGCTGAACTCTGCTCTCAACACGCAA
GGGAGGGGATGGTGAACGTGGTCAGCAAGAGGTGTGGGCACCAAGGGTGC
AACACAAAACCGTCGTACGGCGTCGAAGGCACCAAGACGGCTGAGCTCTG
CTCTCAGCACGCGAGGGAGGGGATGGTGGACGTG
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