mRNA_L-elsbetiae_contig21667.6635.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21667.6635.1
Unique NamemRNA_L-elsbetiae_contig21667.6635.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21667.6635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21667contigL-elsbetiae_contig21667:1499..1771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21667.6635.1prot_L-elsbetiae_contig21667.6635.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21667 1506..1771 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815883.2971032-UTR-L-elsbetiae_contig21667:1498..15051622815883.2971032-UTR-L-elsbetiae_contig21667:1498..1505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21667 1499..1505 -
1691683166.889338-UTR-L-elsbetiae_contig21667:1498..15051691683166.889338-UTR-L-elsbetiae_contig21667:1498..1505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21667 1499..1505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815883.308095-CDS-L-elsbetiae_contig21667:1505..15831622815883.308095-CDS-L-elsbetiae_contig21667:1505..1583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21667 1506..1583 -
1691683166.898554-CDS-L-elsbetiae_contig21667:1505..15831691683166.898554-CDS-L-elsbetiae_contig21667:1505..1583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21667 1506..1583 -
1622815883.3197105-CDS-L-elsbetiae_contig21667:1597..17711622815883.3197105-CDS-L-elsbetiae_contig21667:1597..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21667 1598..1771 -
1691683166.907493-CDS-L-elsbetiae_contig21667:1597..17711691683166.907493-CDS-L-elsbetiae_contig21667:1597..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21667 1598..1771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21667.6635.1

>prot_L-elsbetiae_contig21667.6635.1 ID=prot_L-elsbetiae_contig21667.6635.1|Name=mRNA_L-elsbetiae_contig21667.6635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
KRTNDSNPRQRSAHGLPQSSKASQQHGVHDIFSEYAHDEEREACGGKLRS
TPERFGGGGRVRSAYGPVPDDRCTIYNRKCSRS*
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mRNA from alignment at L-elsbetiae_contig21667:1499..1771-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21667.6635.1 ID=mRNA_L-elsbetiae_contig21667.6635.1|Name=mRNA_L-elsbetiae_contig21667.6635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=273bp|location=Sequence derived from alignment at L-elsbetiae_contig21667:1499..1771- (Laminarionema elsbetiae ELsaHSoW15)
AAACGCACCAACGACTCCAACCCGAGGCAACGATCGGCACACGGGCTCCC
CCAGTCGTCGAAAGCTTCGCAGCAGCACGGGGTGCACGATATTTTCAGCG
AGTACGCCCACGACGAGGAGAGAGAAGCGTGTGGCGGTAAACTCAGGAGC
ACGCCGGAAAGGTTCGGGGGGGGGGTACCACTGTAAAGGGTCGGGTAAGA
AGCGCATACGGTCCCGTCCCAGACGATCGGTGTACCATCTACAATCGCAA
GTGCAGCAGAAGTTAGACGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21667:1499..1771-

>mRNA_L-elsbetiae_contig21667.6635.1 ID=mRNA_L-elsbetiae_contig21667.6635.1|Name=mRNA_L-elsbetiae_contig21667.6635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig21667:1499..1771- (Laminarionema elsbetiae ELsaHSoW15)
AAACGCACCAACGACTCCAACCCGAGGCAACGATCGGCACACGGGCTCCC
CCAGTCGTCGAAAGCTTCGCAGCAGCACGGGGTGCACGATATTTTCAGCG
AGTACGCCCACGACGAGGAGAGAGAAGCGTGTGGCGGTAAACTCAGGAGC
ACGCCGGAAAGGTTCGGGGGGGGGAAACGCACCAACGACTCCAACCCGAG
GCAACGATCGGCACACGGGCTCCCCCAGTCGTCGAAAGCTTCGCAGCAGC
ACGGGGTGCACGATATTTTCAGCGAGTACGCCCACGACGAGGAGAGAGAA
GCGTGTGGCGGTAAACTCAGGAGCACGCCGGAAAGGTTCGGGGGGGGGGG
TCGGGTAAGAAGCGCATACGGTCCCGTCCCAGACGATCGGTGTACCATCT
ACAATCGCAAGTGCAGCAGAAGTTAGGGTCGGGTAAGAAGCGCATACGGT
CCCGTCCCAGACGATCGGTGTACCATCTACAATCGCAAGTGCAGCAGAAG
TTAG
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