mRNA_L-elsbetiae_contig21665.6634.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21665.6634.1
Unique NamemRNA_L-elsbetiae_contig21665.6634.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21665.6634.1 vs. uniprot
Match: D8LDB0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB0_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.980e-31
Identity = 112/254 (44.09%), Postives = 127/254 (50.00%), Query Frame = 1 
Query:    1 RKKDFAELAAKNGRRMKRESAQYQGVLSTCQNLLRQNGIDAGVTWASLPPEVAEAGDSPGGSAAQPKGTRSCSPA----DAGSSSWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPVARVCGACAKAFSSEAFLSKHMERRHPDLVQQ---------EHXXXXXXXXXXXXXXXXXXXXXXXKGGHETTPVQTEGEGYGTERGXXXXXXXXXXXXXXXXXXXXXXLVREREHARFRSEVVALRKEVEDLK 723
            R K +AEL+AK+GRRMKRES Q++ VL+TCQ++LRQ GID    W SLP EVA AG    G  AQPK  RSC PA      GS                                    PVARVCGAC KAFSSE FL KHM+RRHPDLV+Q         E             XXXXXXXXXXX             +G G+E                        LVREREHARF+ EVVALR+EV+DLK
Sbjct:  115 RLKAYAELSAKDGRRMKRESVQHKHVLNTCQSVLRQYGIDPRAIWESLPAEVAGAGGC-SGPGAQPKDPRSCLPAAGMPSCGSHKPSAPPPPVEDSGVAQGGHNCGAAVSGGGASTSGTPVARVCGACGKAFSSEQFLRKHMDRRHPDLVRQDTAPLAEKEEVKNDSPASTPLPPXXXXXXXXXXXXXXXXXXXXXXXXKGTGSE--DKGGGENVIGSEVVEGARRLGELVREREHARFKLEVVALRREVQDLK 365
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21665.6634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDB0_ECTSI1.980e-3144.09C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21665contigL-elsbetiae_contig21665:578..1826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-25_001890.1
Exons3
Model size723
Cds size723
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21665.6634.1prot_L-elsbetiae_contig21665.6634.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21665 578..1826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815883.2452762-CDS-L-elsbetiae_contig21665:577..7061622815883.2452762-CDS-L-elsbetiae_contig21665:577..706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21665 578..706 -
1691683166.8610892-CDS-L-elsbetiae_contig21665:577..7061691683166.8610892-CDS-L-elsbetiae_contig21665:577..706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21665 578..706 -
1622815883.2585917-CDS-L-elsbetiae_contig21665:808..13091622815883.2585917-CDS-L-elsbetiae_contig21665:808..1309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21665 809..1309 -
1691683166.872614-CDS-L-elsbetiae_contig21665:808..13091691683166.872614-CDS-L-elsbetiae_contig21665:808..1309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21665 809..1309 -
1622815883.2684064-CDS-L-elsbetiae_contig21665:1733..18261622815883.2684064-CDS-L-elsbetiae_contig21665:1733..1826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21665 1734..1826 -
1691683166.8808498-CDS-L-elsbetiae_contig21665:1733..18261691683166.8808498-CDS-L-elsbetiae_contig21665:1733..1826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21665 1734..1826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21665.6634.1

>prot_L-elsbetiae_contig21665.6634.1 ID=prot_L-elsbetiae_contig21665.6634.1|Name=mRNA_L-elsbetiae_contig21665.6634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
RKKDFAELAAKNGRRMKRESAQYQGVLSTCQNLLRQNGIDAGVTWASLPP
EVAEAGDSPGGSAAQPKGTRSCSPADAGSSSWGGGGGGGGHKPSAPPGEG
GGSWAAAGGAAAAEPPVARVCGACAKAFSSEAFLSKHMERRHPDLVQQEH
EHDQEERKPDPEPGARGQGQEQEKGGHETTPVQTEGEGYGTERGGVGSEE
ADGAAEVAEGARRLGELVREREHARFRSEVVALRKEVEDLK
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mRNA from alignment at L-elsbetiae_contig21665:578..1826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21665.6634.1 ID=mRNA_L-elsbetiae_contig21665.6634.1|Name=mRNA_L-elsbetiae_contig21665.6634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1249bp|location=Sequence derived from alignment at L-elsbetiae_contig21665:578..1826- (Laminarionema elsbetiae ELsaHSoW15)
CGAAAAAAGGACTTCGCGGAGCTGGCCGCCAAGAACGGGAGGAGGATGAA
GAGGGAGTCCGCCCAGTACCAGGGGGTCCTGAGCACGTGCCAGGTGTGTG
TGTGTGTGTGTGTGAGAGAGAGAGAGAAAGGTGCGCGGGTTATTTATATA
TTCGCGGGCTGTGCACTCACTGCACGCCACGCGTTGCCGCGTGAAACCGA
AGCCATGTCCGCAGACAGAATCCCGTCCGCTCGCCTCGCCTCTTGTACAC
GCATCAAGCCAGAGAGTAAGTCTGCCCCCGCCCACCGCCTCTTCTGCACG
CACCAGGCTAGAGAGTGTCAACGGAGGAGCAAACAAGTCGCCCCCCTCCC
CCCCCCCCAAGGCGGGAACAACAAACCCAAACAACATCTCTCCGATCCGA
TCAGGCATTTTTGAAGTAAGTAAGAATCATCGTCAGTGACGAACACATCA
CACCACATATGGTACGCCCGCGCCCGCCTGCGGCCTGTGCCTCCCCCCCC
TCCCCCCGTCCGCGCAGAACCTCCTCCGACAGAACGGCATCGACGCCGGG
GTTACCTGGGCTTCGCTGCCGCCTGAGGTAGCCGAGGCTGGAGACTCGCC
CGGTGGTTCGGCGGCGCAGCCGAAAGGCACTCGTTCGTGCTCCCCGGCGG
ACGCTGGTTCTAGCTCGTGGGGCGGCGGCGGCGGCGGCGGCGGCCACAAG
CCCTCCGCCCCTCCCGGAGAGGGGGGGGGGTCTTGGGCAGCGGCCGGGGG
GGCGGCGGCGGCGGAGCCCCCCGTGGCGAGGGTCTGCGGGGCGTGCGCGA
AGGCGTTTTCCTCCGAGGCGTTCCTGAGCAAGCACATGGAACGCCGGCAC
CCGGACTTGGTGCAGCAGGAGCACGAACACGACCAGGAGGAGCGTAAGCC
GGACCCGGAACCGGGGGCGCGGGGGCAGGGGCAGGAGCAGGAGAAAGGGG
GGCACGAAACAACGCCGGTGCAGACCGAGGGAGAGGGGTATGGTACCGAG
AGGGGGGGGGTAGGCTCGGTGCCGGCGGCGTCCGCCGCCGCGGCGCAAGA
GAGCAGGGGCGAGGCCGCGGCCGCCGCGGGAGCGGGGTCGGGGACCGGGG
GCGGCGGCGAGGAGGAGAAGGAGGAGGCTGACGGGGCGGCGGAGGTGGCC
GAGGGGGCGAGGAGGCTCGGGGAGCTCGTCCGCGAGCGGGAGCACGCCAG
GTTTAGGTCGGAAGTGGTTGCGCTTCGGAAGGAGGTCGAGGATCTTAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21665:578..1826-

>mRNA_L-elsbetiae_contig21665.6634.1 ID=mRNA_L-elsbetiae_contig21665.6634.1|Name=mRNA_L-elsbetiae_contig21665.6634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig21665:578..1826- (Laminarionema elsbetiae ELsaHSoW15)
CGAAAAAAGGACTTCGCGGAGCTGGCCGCCAAGAACGGGAGGAGGATGAA
GAGGGAGTCCGCCCAGTACCAGGGGGTCCTGAGCACGTGCCAGCGAAAAA
AGGACTTCGCGGAGCTGGCCGCCAAGAACGGGAGGAGGATGAAGAGGGAG
TCCGCCCAGTACCAGGGGGTCCTGAGCACGTGCCAGAACCTCCTCCGACA
GAACGGCATCGACGCCGGGGTTACCTGGGCTTCGCTGCCGCCTGAGGTAG
CCGAGGCTGGAGACTCGCCCGGTGGTTCGGCGGCGCAGCCGAAAGGCACT
CGTTCGTGCTCCCCGGCGGACGCTGGTTCTAGCTCGTGGGGCGGCGGCGG
CGGCGGCGGCGGCCACAAGCCCTCCGCCCCTCCCGGAGAGGGGGGGGGGT
CTTGGGCAGCGGCCGGGGGGGCGGCGGCGGCGGAGCCCCCCGTGGCGAGG
GTCTGCGGGGCGTGCGCGAAGGCGTTTTCCTCCGAGGCGTTCCTGAGCAA
GCACATGGAACGCCGGCACCCGGACTTGGTGCAGCAGGAGCACGAACACG
ACCAGGAGGAGCGTAAGCCGGACCCGGAACCGGGGGCGCGGGGGCAGGGG
CAGGAGCAGGAGAAAGGGGGGCACGAAACAACGCCGGTGCAGACCGAGGG
AGAGGGGTATGGTACCGAGAGGGGGGGGGTAGGCTCGAACCTCCTCCGAC
AGAACGGCATCGACGCCGGGGTTACCTGGGCTTCGCTGCCGCCTGAGGTA
GCCGAGGCTGGAGACTCGCCCGGTGGTTCGGCGGCGCAGCCGAAAGGCAC
TCGTTCGTGCTCCCCGGCGGACGCTGGTTCTAGCTCGTGGGGCGGCGGCG
GCGGCGGCGGCGGCCACAAGCCCTCCGCCCCTCCCGGAGAGGGGGGGGGG
TCTTGGGCAGCGGCCGGGGGGGCGGCGGCGGCGGAGCCCCCCGTGGCGAG
GGTCTGCGGGGCGTGCGCGAAGGCGTTTTCCTCCGAGGCGTTCCTGAGCA
AGCACATGGAACGCCGGCACCCGGACTTGGTGCAGCAGGAGCACGAACAC
GACCAGGAGGAGCGTAAGCCGGACCCGGAACCGGGGGCGCGGGGGCAGGG
GCAGGAGCAGGAGAAAGGGGGGCACGAAACAACGCCGGTGCAGACCGAGG
GAGAGGGGTATGGTACCGAGAGGGGGGGGGTAGGCTCGGAGGAGGCTGAC
GGGGCGGCGGAGGTGGCCGAGGGGGCGAGGAGGCTCGGGGAGCTCGTCCG
CGAGCGGGAGCACGCCAGGTTTAGGTCGGAAGTGGTTGCGCTTCGGAAGG
AGGTCGAGGATCTTAAGGAGGAGGCTGACGGGGCGGCGGAGGTGGCCGAG
GGGGCGAGGAGGCTCGGGGAGCTCGTCCGCGAGCGGGAGCACGCCAGGTT
TAGGTCGGAAGTGGTTGCGCTTCGGAAGGAGGTCGAGGATCTTAAG
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