mRNA_L-elsbetiae_contig21660.6633.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21660.6633.1
Unique NamemRNA_L-elsbetiae_contig21660.6633.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21660.6633.1 vs. uniprot
Match: A0A6H5JMA2_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA2_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.970e-40
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 VETVMDGMRRCCA-REKTQADDIFGRAVSPAKMRKHRTHWPTGFHKEDRAGRPVFYDRVGQSDLSKLRAEPDGLDQDEMVQIFTQNMEV 264
            V    + MRRCCA R++ +ADD+F RAVSPAKM+K+RTHWPTGFHK+DRAGRPVFYDRVGQSDLSKLR +PDGLDQDEMVQIFTQNMEV
Sbjct:  396 VRKAKESMRRCCAWRKENEADDLFKRAVSPAKMKKYRTHWPTGFHKQDRAGRPVFYDRVGQSDLSKLREDPDGLDQDEMVQIFTQNMEV 484
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BLAST of mRNA_L-elsbetiae_contig21660.6633.1 vs. uniprot
Match: D7FPB8_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB8_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.670e-40
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 VETVMDGMRRCCA-REKTQADDIFGRAVSPAKMRKHRTHWPTGFHKEDRAGRPVFYDRVGQSDLSKLRAEPDGLDQDEMVQIFTQNMEV 264
            V    + MRRCCA R++ +ADD+F RAVSPAKM+K+RTHWPTGFHK+DRAGRPVFYDRVGQSDLSKLR +PDGLDQDEMVQIFTQNME+
Sbjct:  260 VRKAKESMRRCCAWRKENEADDLFKRAVSPAKMKKYRTHWPTGFHKQDRAGRPVFYDRVGQSDLSKLREDPDGLDQDEMVQIFTQNMEI 348
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21660.6633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMA2_9PHAE1.970e-4079.78CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D7FPB8_ECTSI2.670e-4078.65CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21660contigL-elsbetiae_contig21660:161..1603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue2.6e-34
Seed eggNOG ortholog2880.D7FPB8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-15_003980.2
Exons2
Model size270
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21660.6633.1prot_L-elsbetiae_contig21660.6633.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21660 173..1603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815883.1762-UTR-L-elsbetiae_contig21660:160..1721622815883.1762-UTR-L-elsbetiae_contig21660:160..172Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21660 161..172 +
1691683166.8331237-UTR-L-elsbetiae_contig21660:160..1721691683166.8331237-UTR-L-elsbetiae_contig21660:160..172Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21660 161..172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815883.1912184-CDS-L-elsbetiae_contig21660:172..2091622815883.1912184-CDS-L-elsbetiae_contig21660:172..209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21660 173..209 +
1691683166.8432794-CDS-L-elsbetiae_contig21660:172..2091691683166.8432794-CDS-L-elsbetiae_contig21660:172..209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21660 173..209 +
1622815883.2052279-CDS-L-elsbetiae_contig21660:1382..16031622815883.2052279-CDS-L-elsbetiae_contig21660:1382..1603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21660 1383..1603 +
1691683166.8524766-CDS-L-elsbetiae_contig21660:1382..16031691683166.8524766-CDS-L-elsbetiae_contig21660:1382..1603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21660 1383..1603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21660.6633.1

>prot_L-elsbetiae_contig21660.6633.1 ID=prot_L-elsbetiae_contig21660.6633.1|Name=mRNA_L-elsbetiae_contig21660.6633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
MDGMRRCCAREKTQADDIFGRAVSPAKMRKHRTHWPTGFHKEDRAGRPVF
YDRVGQSDLSKLRAEPDGLDQDEMVQIFTQNMEVG*
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mRNA from alignment at L-elsbetiae_contig21660:161..1603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21660.6633.1 ID=mRNA_L-elsbetiae_contig21660.6633.1|Name=mRNA_L-elsbetiae_contig21660.6633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1443bp|location=Sequence derived from alignment at L-elsbetiae_contig21660:161..1603+ (Laminarionema elsbetiae ELsaHSoW15)
GTAGAAACGGTGATGGATGGAATGCGCCGGTGCTGCGCGCGTGAGAAAAG
TGAGAAAAGTGAAGGAGGTGCAGTCAGTACCGGCCTCCGCCTGTAAGAAA
CCGCAGAGATCATGGCTTCCTTGGGCCGTTTCTGAAGAGACGTTGTCTTG
CCTTGCGTGAGGGTTTCAGTGCGATGAAGGATGCAATAGAAACGTTTCAA
AAAATAAACAAAGAATCAAAGATGGAACCTAACCCACACTAGAGCAAAGA
CTCGATATGGGGTTCAAACGGTATTCCATACAGAGACGTTTTATCATCCA
CTTTTCCAATCCCATACATGGGAACCTTATGCGAGCGAGGCTTAGATAGA
GATCGTCGCCGTCTAATGTATACATACCAGTAGGATTTATTTGCGGCATC
TCGCCGCTGAGCCCCCCGTTTTTTCTTAGTTTTTTCGGACATCTCCGCCT
GAATTTCCTTCGACGCAGCTTTCATGCCAACCGGCTATACATAGCGCGGT
CGATGCTTGTTAAAAAAAATCCTCTTGTGTTTTAGTTTTTTTTTTAATCG
GCCGGCGCAATATTATGTCACCATATGGAATACGGATTGAATCTCACGGA
GTCAGTCCCGTCTCAATGTGGGTTAGGTTCCATTTTTTATGAACTGTTTT
TTATGAACTGTTCTTGTAGTGCGGTCGATGCCAATTAAGGACACACACAC
ACACACACACACACACACACTTGTTGGGATTTTGTTGCCCGCCACAGGCT
AGGTCTTTCCATTGATCAGCCGTTTAGCGCGGTCGATTCTCTTTTAGAGA
ACGCACGCACGCGCACACACACGCAAGCACACACACACACACATACACAC
ACTTGTTGCGATTTTGTTGCCCGCCACAGGCTGATGTCTTTCCATTGATC
AACCGTTTAGCGCGGTCGATGCTCTTTTAGAGAACGTACACACACACACA
CTTGTTGCGATTTTTTGCCCGCCACTGGCTGATGTCTTTCCATTGATTAA
CCGTTTAGTGCGGTCGATGCTCTTTTAGAGAACGAACACACACACACACA
CACACACACCAACACATACAACAAACACACCCACACGCACAAACACACTC
ACACACACACACGAACACATACAAACACGTACACACACAAAAACACACAC
ACACACAAACAAACACATACACAAACAAACAAACACACACACACACACAC
ACACACACAACTGCTTAAAAAGCGCAGGCAGACGACATCTTCGGGCGTGC
GGTGTCGCCGGCCAAGATGCGCAAGCACCGCACCCACTGGCCGACGGGGT
TCCACAAGGAGGACAGGGCCGGGCGTCCGGTGTTCTACGACCGCGTCGGG
CAGTCCGACTTGAGCAAGCTGAGGGCGGAACCAGACGGCCTCGACCAGGA
CGAGATGGTGCAGATCTTCACCCAGAACATGGAGGTGGGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21660:161..1603+

>mRNA_L-elsbetiae_contig21660.6633.1 ID=mRNA_L-elsbetiae_contig21660.6633.1|Name=mRNA_L-elsbetiae_contig21660.6633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig21660:161..1603+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGAATGCGCCGGTGCTGCGCGCGTGAGAAAAATGGATGGAATGC
GCCGGTGCTGCGCGCGTGAGAAAACGCAGGCAGACGACATCTTCGGGCGT
GCGGTGTCGCCGGCCAAGATGCGCAAGCACCGCACCCACTGGCCGACGGG
GTTCCACAAGGAGGACAGGGCCGGGCGTCCGGTGTTCTACGACCGCGTCG
GGCAGTCCGACTTGAGCAAGCTGAGGGCGGAACCAGACGGCCTCGACCAG
GACGAGATGGTGCAGATCTTCACCCAGAACATGGAGGTGGGTTGACGCAG
GCAGACGACATCTTCGGGCGTGCGGTGTCGCCGGCCAAGATGCGCAAGCA
CCGCACCCACTGGCCGACGGGGTTCCACAAGGAGGACAGGGCCGGGCGTC
CGGTGTTCTACGACCGCGTCGGGCAGTCCGACTTGAGCAAGCTGAGGGCG
GAACCAGACGGCCTCGACCAGGACGAGATGGTGCAGATCTTCACCCAGAA
CATGGAGGTGGGTTGA
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