mRNA_L-elsbetiae_contig21659.6631.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21659.6631.1
Unique NamemRNA_L-elsbetiae_contig21659.6631.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21659.6631.1 vs. uniprot
Match: A0A6H5JFD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD8_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.730e-54
Identity = 95/105 (90.48%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:    1 QVTLIHSLMSGKKKTIFNGELINEAQKVSKEWVFAWSYGAHLLRVGINFEEYGLVIDGIPFRNFSRRDPYLAAQLEATKRDSMMSLQSDEKRRFDRLGYN--SGG 309
            +VTLIHSLMSGKKKTIF+GE+INEAQKVSKEWVFAWS+GAHLLRVGINFEEYGLVIDGIPF+NFSRRDPYLAAQLEATKRDSM SLQ+DEKRRFDRLGY   SGG
Sbjct:   60 EVTLIHSLMSGKKKTIFDGEVINEAQKVSKEWVFAWSFGAHLLRVGINFEEYGLVIDGIPFKNFSRRDPYLAAQLEATKRDSMRSLQTDEKRRFDRLGYGGESGG 164
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BLAST of mRNA_L-elsbetiae_contig21659.6631.1 vs. uniprot
Match: D7G6N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N2_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 7.110e-52
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:   25 MSGKKKTIFNGELINEAQKVSKEWVFAWSYGAHLLRVGINFEEYGLVIDGIPFRNFSRRDPYLAAQLEATKRDSMMSLQSDEKRRFDRLGY 297
            MSGKKKTIFNGELINEAQKVSKEWVFAWS+GAHLLRVGINFEEYGLVIDGIPF+NFSRRDPYLAAQLEATKRDSM SLQ+DEKRRFDRLG+
Sbjct:    1 MSGKKKTIFNGELINEAQKVSKEWVFAWSFGAHLLRVGINFEEYGLVIDGIPFKNFSRRDPYLAAQLEATKRDSMRSLQTDEKRRFDRLGF 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21659.6631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFD8_9PHAE1.730e-5490.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6N2_ECTSI7.110e-5294.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21659contigL-elsbetiae_contig21659:875..2108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006140.1
Exons2
Model size549
Cds size525
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21659.6631.1prot_L-elsbetiae_contig21659.6631.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21659 899..2108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.92711-UTR-L-elsbetiae_contig21659:874..8981622815882.92711-UTR-L-elsbetiae_contig21659:874..898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21659 875..898 +
1691683166.6319377-UTR-L-elsbetiae_contig21659:874..8981691683166.6319377-UTR-L-elsbetiae_contig21659:874..898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21659 875..898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.938912-CDS-L-elsbetiae_contig21659:898..10621622815882.938912-CDS-L-elsbetiae_contig21659:898..1062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21659 899..1062 +
1691683166.6433353-CDS-L-elsbetiae_contig21659:898..10621691683166.6433353-CDS-L-elsbetiae_contig21659:898..1062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21659 899..1062 +
1622815882.9496756-CDS-L-elsbetiae_contig21659:1747..21081622815882.9496756-CDS-L-elsbetiae_contig21659:1747..2108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21659 1748..2108 +
1691683166.652856-CDS-L-elsbetiae_contig21659:1747..21081691683166.652856-CDS-L-elsbetiae_contig21659:1747..2108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21659 1748..2108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21659.6631.1

>prot_L-elsbetiae_contig21659.6631.1 ID=prot_L-elsbetiae_contig21659.6631.1|Name=mRNA_L-elsbetiae_contig21659.6631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
MSGKKKTIFNGELINEAQKVSKEWVFAWSYGAHLLRVGINFEEYGLVIDG
IPFRNFSRRDPYLAAQLEATKRDSMMSLQSDEKRRFDRLGYNSGGDGGGG
RRGSGSSGGSRSRAAERQRGGGGGSSREDGQRRASSNGRSSLNRERGGGG
GRRSGSVEGRRSSPPARSSSSRKMQ
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mRNA from alignment at L-elsbetiae_contig21659:875..2108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21659.6631.1 ID=mRNA_L-elsbetiae_contig21659.6631.1|Name=mRNA_L-elsbetiae_contig21659.6631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1234bp|location=Sequence derived from alignment at L-elsbetiae_contig21659:875..2108+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGACGCTGATACACTCTCTCATGAGCGGCAAGAAGAAGACGATCTT
CAACGGAGAGCTCATCAACGAGGCCCAGAAGGTCTCCAAGGAGTGGGTCT
TCGCCTGGTCGTATGGCGCCCACCTGCTGAGGGTCGGGATAAACTTCGAG
GAGTACGGCCTGGTGATCGACGGGATCCCCTTCAGGAAGTGAGTCGCCGT
CACGAGTCAGCGAACCCCATTTCCCTTCTATTGCGTTATCATTCCGTCGG
TCCAGCAGGCATGAGTTCACAACGTCGAGGTCGAATCGAATCGAATCGAT
TCTAACCTTGTTCATACCTCGATTGCCACTTTCCAAAGCGCGTACATGAG
GAACGAAAAATTGTCGGGGTGCATATTCATGTAATGGAGCGCCAGGGCGG
GCAAGCAGGGGGGGCGGGTCCGGCAGATCGAGGTGCACATGCCGTATTAT
TACAGCTGTAGAAGGGGCCGCCCCCTCCTCACAGCTCCTTCCTTCTCCCT
CTCGAAACAGAACAGAGGTCTGGAATCGGATCAAATGTTTTTAAAGTTTT
AAGCTGGCGCGTCGAGTGAGTTCCTTTCCCCGCCCCCGCCCCCGCCCTGC
CCTTTCTCGGTCGCTTCGTCTCCCCGCTCATAGATGTGTGTACCCACCTG
CTGGTATTTATGATGTCTACGTGCGCTTGTTTATTTAATGTACATAACCA
CCACACTTCTTCCAGGGATCATCTTGGGCTCCGCGGTGCTAAAGCTGATT
TTTCGTTCGTTGTCGCCTCCTGCTGCTCCCTACACATATGGACGTACCCG
CGCCCGGCCTCGCCCACCTCGCGGCCTCATTTCGGAAAAAAAAACTCACA
CACACGCACGCACACGCACACAGCTTCAGCCGCAGAGACCCGTACCTCGC
GGCGCAGCTGGAGGCGACGAAGCGGGACAGTATGATGAGCCTCCAGAGCG
ACGAGAAACGCCGGTTCGACCGCCTGGGATACAACTCCGGCGGCGACGGC
GGCGGCGGTCGTCGCGGCAGCGGCAGCAGCGGCGGCAGCAGGTCGAGGGC
GGCGGAGCGCCAAAGGGGCGGCGGCGGCGGCTCCTCTAGAGAGGACGGCC
AGCGCAGGGCCTCGAGCAACGGGCGGAGCAGCCTCAACCGGGAGCGCGGT
GGGGGCGGGGGTCGCCGGTCGGGTTCGGTGGAAGGCAGGAGGTCGTCGCC
CCCCGCCCGCTCTTCGTCATCAAGGAAGATGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21659:875..2108+

>mRNA_L-elsbetiae_contig21659.6631.1 ID=mRNA_L-elsbetiae_contig21659.6631.1|Name=mRNA_L-elsbetiae_contig21659.6631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig21659:875..2108+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGGCAAGAAGAAGACGATCTTCAACGGAGAGCTCATCAACGAGGC
CCAGAAGGTCTCCAAGGAGTGGGTCTTCGCCTGGTCGTATGGCGCCCACC
TGCTGAGGGTCGGGATAAACTTCGAGGAGTACGGCCTGGTGATCGACGGG
ATCCCCTTCAGGAAATGAGCGGCAAGAAGAAGACGATCTTCAACGGAGAG
CTCATCAACGAGGCCCAGAAGGTCTCCAAGGAGTGGGTCTTCGCCTGGTC
GTATGGCGCCCACCTGCTGAGGGTCGGGATAAACTTCGAGGAGTACGGCC
TGGTGATCGACGGGATCCCCTTCAGGAACTTCAGCCGCAGAGACCCGTAC
CTCGCGGCGCAGCTGGAGGCGACGAAGCGGGACAGTATGATGAGCCTCCA
GAGCGACGAGAAACGCCGGTTCGACCGCCTGGGATACAACTCCGGCGGCG
ACGGCGGCGGCGGTCGTCGCGGCAGCGGCAGCAGCGGCGGCAGCAGGTCG
AGGGCGGCGGAGCGCCAAAGGGGCGGCGGCGGCGGCTCCTCTAGAGAGGA
CGGCCAGCGCAGGGCCTCGAGCAACGGGCGGAGCAGCCTCAACCGGGAGC
GCGGTGGGGGCGGGGGTCGCCGGTCGGGTTCGGTGGAAGGCAGGAGGTCG
TCGCCCCCCGCCCGCTCTTCGTCATCAAGGAAGATGCAGCTTCAGCCGCA
GAGACCCGTACCTCGCGGCGCAGCTGGAGGCGACGAAGCGGGACAGTATG
ATGAGCCTCCAGAGCGACGAGAAACGCCGGTTCGACCGCCTGGGATACAA
CTCCGGCGGCGACGGCGGCGGCGGTCGTCGCGGCAGCGGCAGCAGCGGCG
GCAGCAGGTCGAGGGCGGCGGAGCGCCAAAGGGGCGGCGGCGGCGGCTCC
TCTAGAGAGGACGGCCAGCGCAGGGCCTCGAGCAACGGGCGGAGCAGCCT
CAACCGGGAGCGCGGTGGGGGCGGGGGTCGCCGGTCGGGTTCGGTGGAAG
GCAGGAGGTCGTCGCCCCCCGCCCGCTCTTCGTCATCAAGGAAGATGCAG
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