mRNA_L-elsbetiae_contig2165.6629.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2165.6629.1
Unique NamemRNA_L-elsbetiae_contig2165.6629.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2165.6629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2165contigL-elsbetiae_contig2165:687..1895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size299
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2165.6629.1prot_L-elsbetiae_contig2165.6629.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2165 783..1895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.616345-UTR-L-elsbetiae_contig2165:686..7821622815882.616345-UTR-L-elsbetiae_contig2165:686..782Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2165 687..782 +
1691683166.3633373-UTR-L-elsbetiae_contig2165:686..7821691683166.3633373-UTR-L-elsbetiae_contig2165:686..782Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2165 687..782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.6258438-CDS-L-elsbetiae_contig2165:782..9531622815882.6258438-CDS-L-elsbetiae_contig2165:782..953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2165 783..953 +
1691683166.3748457-CDS-L-elsbetiae_contig2165:782..9531691683166.3748457-CDS-L-elsbetiae_contig2165:782..953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2165 783..953 +
1622815882.6356466-CDS-L-elsbetiae_contig2165:1865..18951622815882.6356466-CDS-L-elsbetiae_contig2165:1865..1895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2165 1866..1895 +
1691683166.385313-CDS-L-elsbetiae_contig2165:1865..18951691683166.385313-CDS-L-elsbetiae_contig2165:1865..1895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2165 1866..1895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2165.6629.1

>prot_L-elsbetiae_contig2165.6629.1 ID=prot_L-elsbetiae_contig2165.6629.1|Name=mRNA_L-elsbetiae_contig2165.6629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MYLRSDRLFVHSLLIGQGSCTDRRAVFMCLRSWHTHSFTTPAEVSNTKSQ
RRRAYQEVHRRHVVSEC
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mRNA from alignment at L-elsbetiae_contig2165:687..1895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2165.6629.1 ID=mRNA_L-elsbetiae_contig2165.6629.1|Name=mRNA_L-elsbetiae_contig2165.6629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1209bp|location=Sequence derived from alignment at L-elsbetiae_contig2165:687..1895+ (Laminarionema elsbetiae ELsaHSoW15)
CTTAGGTTGCATAGATATCGTAGTGGCAGCAACAGGTAAGACTTGCTTGT
ACCTTTGAAGTCGAGCAAGTCACGAAAGCAACGCCTTACCGTACATATGT
ATCTAAGATCTGACCGTCTTTTCGTGCACAGTTTGTTGATTGGGCAAGGG
AGTTGCACCGACCGACGCGCAGTTTTCATGTGTCTCCGCTCCTGGCACAC
CCACTCATTTACTACCCCAGCTGAAGTGAGCAACACCAAAAGCCAGCGGC
GGCGGGCTTACCAAGAGGTAAGAACTGAAGGTAGCATTCAAGCTACATGG
TAGTAGATAGATGGACTATCTACAAACCTTTCTGTCTCTATCTAGACAGC
AAGATACCTTACTTTTAGAGAGCTGTCCGGTCAGCGACCTTCACTCTCTC
TGTTTCTATCTTCGGAGGTCGTTGCACCTCTAGTGTTCGCGTCTGTTGAT
CTGACTGTGTGTACCTCTTTATGTCTGTCTTGCGTTCCGCCCTGACTCGA
TCCGGAGGAGAGAAGATGCGATCAGCAGAGAATGAATGCTTCGTTCATCT
CTCTCATTCTGTCCTCTGAGAGAGATCTTCACATCTCTAACTCTGATTTT
GCTGCGATCTGCTCGCTCCTTTGGTTCTCTTAGCTCGCTCGGTCTCTTTC
ATGCGGCAGAGAAGAGCCGGGCTTGCTTGGAGTCTCCAACCCGAAGTCTC
TATCTCTCCATGTTCCGGTACTGCCTACATATCTAGACAAATATCTTGTA
ACCGCACAGAGCAGAGAGGCATAGATATATCTAGACTATATGGATCGAGC
TTGATCTCTTGCGCATGTCCTCGGGCGTGAGAGGGGCCAGCTCCTCTGGC
TCAGATCATATCTAGATTAATGCTGTGCCTGAGACTGTGATGTGTTTAAT
TAATGAGACTCGTGTTTCCGAAATGAGATCTGCTAAAAATATTTGCTCAA
AACCAAAGGCTCAAGATCTCAAGATCTATCTTCTGCAGAGAAAATTTATT
TGCCTAAAAAACTAAAAAATAACAAAAGGAGTAAAGCTTTTCCCGCGCCC
TGCACACCAAAAAAATAAAATCGATGTTTTTCGGAGAGTCTCCCGTCTCA
ATGTGGGTTAGGTTCCATTTTTGATTTACTGTTTTTCCTTCCAAAACGCG
CTCTTCTCTTCTCGCTTTTGATCAGTCAGGTGCATCGTCGTCATGTTGTC
TCCGAATGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2165:687..1895+

>mRNA_L-elsbetiae_contig2165.6629.1 ID=mRNA_L-elsbetiae_contig2165.6629.1|Name=mRNA_L-elsbetiae_contig2165.6629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig2165:687..1895+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATCTAAGATCTGACCGTCTTTTCGTGCACAGTTTGTTGATTGGGCA
AGGGAGTTGCACCGACCGACGCGCAGTTTTCATGTGTCTCCGCTCCTGGC
ACACCCACTCATTTACTACCCCAGCTGAAGTGAGCAACACCAAAAGCCAG
CGGCGGCGGGCTTACCAAGAGATGTATCTAAGATCTGACCGTCTTTTCGT
GCACAGTTTGTTGATTGGGCAAGGGAGTTGCACCGACCGACGCGCAGTTT
TCATGTGTCTCCGCTCCTGGCACACCCACTCATTTACTACCCCAGCTGAA
GTGAGCAACACCAAAAGCCAGCGGCGGCGGGCTTACCAAGAGGTGCATCG
TCGTCATGTTGTCTCCGAATGCGTGCATCGTCGTCATGTTGTCTCCGAAT
GC
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