mRNA_L-elsbetiae_contig2164.6627.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2164.6627.1
Unique NamemRNA_L-elsbetiae_contig2164.6627.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2164.6627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2164contigL-elsbetiae_contig2164:9688..14471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1714
Cds size1572
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2164.6627.1prot_L-elsbetiae_contig2164.6627.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2164 12841..14412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.452856-UTR-L-elsbetiae_contig2164:9687..97261622815882.452856-UTR-L-elsbetiae_contig2164:9687..9726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 9688..9726 +
1691683166.256799-UTR-L-elsbetiae_contig2164:9687..97261691683166.256799-UTR-L-elsbetiae_contig2164:9687..9726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 9688..9726 +
1622815882.4643652-UTR-L-elsbetiae_contig2164:12796..128401622815882.4643652-UTR-L-elsbetiae_contig2164:12796..12840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 12797..12840 +
1691683166.2701807-UTR-L-elsbetiae_contig2164:12796..128401691683166.2701807-UTR-L-elsbetiae_contig2164:12796..12840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 12797..12840 +
1622815882.4893444-UTR-L-elsbetiae_contig2164:14412..144711622815882.4893444-UTR-L-elsbetiae_contig2164:14412..14471Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 14413..14471 +
1691683166.288349-UTR-L-elsbetiae_contig2164:14412..144711691683166.288349-UTR-L-elsbetiae_contig2164:14412..14471Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 14413..14471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.4782434-CDS-L-elsbetiae_contig2164:12840..144121622815882.4782434-CDS-L-elsbetiae_contig2164:12840..14412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2164 12841..14412 +
1691683166.2789104-CDS-L-elsbetiae_contig2164:12840..144121691683166.2789104-CDS-L-elsbetiae_contig2164:12840..14412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2164 12841..14412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2164.6627.1

>prot_L-elsbetiae_contig2164.6627.1 ID=prot_L-elsbetiae_contig2164.6627.1|Name=mRNA_L-elsbetiae_contig2164.6627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=524bp
MPPHKHKCIVVAAALAFHVLLYAALRYCCRSVRHSLFYEPDMNEVGKLST
ARIRYAERLLERLAREKVEEEEERGEYDTRGDENGESRCTMERFCVGIVG
TEKRLDHRYLLQSVASLRGIGGVGADCQTDKLFVQIRGDPLLLHERRKEN
EVHADVRLMLDAGIDVDYFRSPYRLGQTYVDGKGVTKKYRLDGTVRGKMQ
WFSDEVDDYRHALDRCLSESPTAPYVLIVEEDVFATRDLMGKLTSAVEFL
ELKHEGEWSSLKLFVTDYWQNWERKPADVALLVVGGVLLACLCELSLKAF
YLAVLVRRWPATEGGDESRLPPSKGVHSTTVSRFQQGVHVEAERDVVVVD
SDGCERKRRRKSGFLSFRNLCGERISARRKWVLRAHLFSLGVAILLAVSK
QALHLSRVSRRGIYADDMGSHTLGMVFPRHVAEEIVSFLEKTDRPLPIDV
LLLKFNEGVVEEGKGQFIIVPSLLQHTGMVSSSTAKVKFQQSVGDLDFYR
NDMKFASKFDDLSAEKLEGYSRT*
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mRNA from alignment at L-elsbetiae_contig2164:9688..14471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2164.6627.1 ID=mRNA_L-elsbetiae_contig2164.6627.1|Name=mRNA_L-elsbetiae_contig2164.6627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4784bp|location=Sequence derived from alignment at L-elsbetiae_contig2164:9688..14471+ (Laminarionema elsbetiae ELsaHSoW15)
AGATCACGCCCCTTCAACAGCACCCCCAAACGTGTGCAGGTGAGCTCCTG
CAGCTGTGAGCGTGTTCCCTGGTGGCAGTAAGGCGTGTGTTGTGGCCAGC
GTGGTCTTGCGAGACCAGCGTGTAGTTTGTCGGTAGACTAAAAGAAGAGC
CGCGTTTAGCGCGCGTGGGATGAGCTACCCGGGATGAGAGAGACGAAACA
CGGGGAGCTGCCCCCCATTACCCACAGTGCATCCCACTACTGCTGAACAT
GCGGCACGCGTACCTTCATCGGTATGGTGCGATCAGTATCGGCCGTGATA
TGTGCAGCTTCACACATCAGTATGATGGGCGCCCCGCCCCCCTCTTCTAT
CTAGACAACTTGATCGTATCGCTCTTTGCTACCGTTGGGGCCAACATTCC
GTGTGTTTGTAACTCATACATATCTCTCCCCATGAAATCAGCTCTCAACT
CCACGCAGGTTTTGGAACGTAGCTGTTGGTACATAGTCTACATACATTCA
CTCGCTCGCGTTAATTCACTCCGGGCTTCCGGAACTACAATTTGTACATA
TCTAGATAGACTAGATAGATAGACTAGTCGACTGAATAGTCGAGCAGCCC
GCGCGCGCGCATGGCCGTTACAAAAAAGCTGGTTCCCCACAGCAGACACA
CGACACACGACAGATGTTTCTGCGCCGAAAAATAGACTTTTCTAGACGTG
AAGCCCTGAGCTGAACACGCACCGCGGCCGCGTCGCCGCCCGGCGACACG
CTGGGGACGACTGTCGGTACGGTTCCTCGGCCCTCAAAACATCACCACAC
GGCAATACTTCGTATGTATTGTTCCCTCGATGTGTTTTCACCCCTGTCGG
AAGGTCCGGTGACCTGGACGCAGTCTAAATTCAGCATGTAAAAATACCCA
CAAAAAAATGTTAACAAAAATGACGCCGTGTCCTCTACTTCTTCTCTAAA
AACGCCCCCGAAAGCCGCCGGCTTGGAAGGCGTTCCGCCCCTCTGGCGCC
CATTCAAGTCAGGCACCACCACCGGCAAACATCCAGATCGATCGATACCG
GTTGTTGTGCTGGTGTGTATGGACGGAAGTCACAGAAGATGTGTTTAGGG
CTGTGTATCTATGCATATGAAAGCGTACTGATGTGTGTGTGTGTGCTGTT
GTGCTGGTGCATGGCGGTCATCATGCGGAGTGCTTGCTTTTGTGTAGATG
AGAGAGAGCGGGCGAGCATGCTATATTTTTCCGAAAGTCGAGCCGCAAAC
AAACGCAAACAAACGCAACACCAACGAAGCAGCAGCGGTGGCGGCAGCCG
TAACAGGCCTTATGGAGACGAAGCATGTAACCTTTCACTCTCTCTGCTGC
TGCTGCTGCCGTAGTACAAGTCTGCACGCGGACGTTTCGACTGCACGCAG
AACGCCCCGATGTACCGACTGACCCGGGTCGGTCCGCAGAAAACCGGGCG
TCTGTTGGAGTCTCAATGTCTATTTTCTAATGGTATGCTCACAAAAACCC
GCTTGGAGTCCCAAAAGGGTCAAGGGTGGACAACGTAGTACTTGATGTTG
GGCATACAGTGACAGCTGCAGCGGCAGCTGTGCACTCTGCACGCTGTTGT
AGGCGTATGTGGCAGAGGCTTGGGTAGACAAACACAAAGAGTGATATTAT
AAACACACACAGACGCCTAAGCTGTCTTCACCTGACGGTGACAGACTTAA
ATTACGCCGCACGATACTGTGTGGAACACACAGTAGAATAGAGTCGTTCT
TGCACTACACTAATATCCCAACACTTGAAATTCCGGGAGTATTTAGACTG
CTGATTCTGAGTTCTTCTTCTTCTTTGAAATCCGTACAACAATAAGAACA
CTACGTGTTTGGCATCGCAATTTCTATGGGGGTCGGGACCCGGTCGGCTG
CCTTAGGCCCATTTTCTTGTGGGGTAAGATCCTGGCTATCTTCGCGTGTC
TTATGTTTTGGCTGGTTTGTAGGGCGTATGTGCCTTTGTTCGTTCAGCAA
AACCCGACCAGGTTGACATAAAATCGGGCGTTTTGAGACGGTTTGAAAGC
ACAAAGTTCTCCAGATTGAAAGCTACTGCTGTGCACCGCTCCTGCTGTGC
TCCGATTATGTTCCTCCGAAGGCCTTAGACTATAAGGCGTGCTCAGCCGA
AGACCCCATCTCCAAAGACCCCGAGCGCTCCATGGTCGACCCTCGCTGTT
GTCTACCACAAGCAAGCGTGCAGCCCTCATTTTCGCCGACACACGAAAAT
AATTGTAGTTTGCTTGGTGTAGACTTGGATTCGTTCAGTCGACCACCCCG
CATATCGCTCATCTGTTCTGCTACCGTCAGTATTAAGAACTATGTAGCTC
GCGATATCCAACCCCAAGGATTGACTGAGAGGCATTTTGGTATCGGTTCT
TGTTTCAAAGCGCAAGAAGAGTCGGTTTTTCGATGTGAGAGGGCAGCTGG
AGAGAGATGTACATACGTAAGGCATTTATTTTCTGTGGGCGATGGCAGAA
AAATACCATTAATTAAAAAAATAAACAAGTGTCGCTTTGGGCCCTCTCTT
GGAATCCCTACCCGGGGTTCAAAAGCTTGGAAGCGCGGCCCAGCCTCAAG
TGTTTTCACAATCGATATCTGGAAAGGTATGGCGAAAAATGTTTTTGGTA
AGCTAAGGAAATTCAGCGAAACTCCAAGCAAAAAACGGCGAAAAAGTAGC
AAAAAAGATATATATATACTTCGAAGTATGCAGTAGTCATGCGTATCCCC
AACAGCATGCTTTGGTGGAGTTTGGAGCTTATTTGATCGAAAACTCGTTC
TTGACGACACGGGAAAAGAATGGCAAAATGCGCCAAGTTTCCTCGCCCCC
TCGCCCCTCACATCTCGTGCAGAACTTTTTGGCCGCGACCACACGATACG
CGGCAGCCACGTCTGTCTGTCTGTCCGTTTGGCCCTTTCGTTGTGGTTTA
CTGACTGCTGTACTTCTTCCCGATTTACTGCCCGCTTCCTCTCTCCTCGC
GCATACCCTCCCCGCCACACTAAATGTGTACCCCCCTGCGTAACCTTTCT
CACACCTTGCTCTTTCCCGCACGGCTGAAATCGCGCACTCGCTTGCACGT
AACCCTCAGGTGACTGCCGCTGAACAGCCACAGGTAGGTACATAGCAGTG
TCCATGCCACCGCACAAACATAAATGCATTGTCGTGGCAGCGGCGCTTGC
GTTCCACGTCCTCTTGTATGCTGCCCTCCGGTATTGCTGTCGGTCTGTGA
GGCACAGCCTTTTCTACGAGCCTGACATGAATGAGGTCGGAAAACTGAGC
ACGGCCAGGATACGGTACGCGGAGAGGCTGTTGGAGAGGCTCGCCAGGGA
GAAGGTGGAGGAGGAAGAGGAGAGAGGAGAGTACGATACGCGCGGGGACG
AGAACGGGGAGAGCCGGTGTACGATGGAAAGGTTCTGCGTGGGAATCGTT
GGGACGGAGAAGAGGTTGGACCACAGGTATCTGCTGCAATCGGTGGCGTC
TTTGAGGGGCATCGGCGGAGTCGGGGCCGATTGCCAGACAGACAAGCTTT
TCGTCCAGATTCGCGGCGACCCGCTCCTCCTCCACGAACGACGCAAGGAA
AACGAAGTTCACGCGGACGTCAGATTAATGTTAGATGCCGGCATCGATGT
TGACTACTTTAGGTCCCCTTATAGGCTGGGGCAGACGTATGTGGATGGCA
AGGGCGTCACAAAGAAGTACAGGTTGGATGGCACTGTCAGAGGGAAAATG
CAATGGTTCTCAGACGAAGTCGACGACTATAGGCACGCCCTGGATCGGTG
CTTGTCGGAAAGTCCGACGGCCCCGTACGTTTTGATAGTCGAGGAAGACG
TATTCGCCACGAGGGACTTGATGGGTAAGCTAACCAGCGCGGTCGAGTTC
CTGGAATTGAAGCATGAAGGGGAGTGGAGCAGCCTCAAGCTCTTCGTCAC
GGACTACTGGCAAAACTGGGAACGGAAGCCGGCGGACGTCGCGCTGTTGG
TGGTTGGGGGTGTCTTGCTTGCCTGCCTTTGCGAGCTCTCGCTGAAGGCT
TTCTATCTTGCCGTCCTTGTTAGACGGTGGCCGGCGACGGAGGGGGGCGA
CGAATCCCGGTTACCGCCGTCGAAGGGGGTACACAGCACAACAGTAAGCA
GGTTTCAGCAAGGGGTGCATGTCGAGGCAGAGCGGGACGTTGTCGTCGTA
GATTCCGACGGCTGTGAGAGGAAGAGGAGAAGGAAAAGCGGTTTTCTTTC
CTTTCGCAACCTTTGTGGGGAGAGAATTTCCGCGCGGCGGAAGTGGGTCC
TGAGGGCGCACCTTTTTTCTCTCGGAGTTGCGATTCTGTTGGCGGTGTCG
AAACAAGCCCTACATTTGTCACGGGTATCGAGGAGGGGAATCTACGCAGA
TGACATGGGGTCCCATACGCTTGGGATGGTCTTCCCCAGACACGTTGCCG
AAGAAATCGTGTCGTTTCTTGAGAAGACGGATCGGCCACTGCCCATAGAC
GTGCTGCTGCTAAAATTTAACGAGGGGGTAGTGGAGGAAGGGAAGGGCCA
ATTCATCATCGTGCCGAGCTTGCTGCAGCACACGGGAATGGTCAGCAGCT
CCACGGCGAAGGTCAAGTTCCAGCAGTCCGTCGGTGATCTTGACTTCTAT
CGAAATGACATGAAGTTCGCGAGCAAGTTTGACGACCTGAGTGCGGAGAA
ACTGGAGGGTTATAGTAGAACGTAGTGGGGCCGGCCGGCGATGGTGTGTA
AGCAACCTAAAACAAAATAACTGAGAACACATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2164:9688..14471+

>mRNA_L-elsbetiae_contig2164.6627.1 ID=mRNA_L-elsbetiae_contig2164.6627.1|Name=mRNA_L-elsbetiae_contig2164.6627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3144bp|location=Sequence derived from alignment at L-elsbetiae_contig2164:9688..14471+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACCGCACAAACATAAATGCATTGTCGTGGCAGCGGCGCTTGCGTT
CCACGTCCTCTTGTATGCTGCCCTCCGGTATTGCTGTCGGTCTGTGAGGC
ACAGCCTTTTCTACGAGCCTGACATGAATGAGGTCGGAAAACTGAGCACG
GCCAGGATACGGTACGCGGAGAGGCTGTTGGAGAGGCTCGCCAGGGAGAA
GGTGGAGGAGGAAGAGGAGAGAGGAGAGTACGATACGCGCGGGGACGAGA
ACGGGGAGAGCCGGTGTACGATGGAAAGGTTCTGCGTGGGAATCGTTGGG
ACGGAGAAGAGGTTGGACCACAGGTATCTGCTGCAATCGGTGGCGTCTTT
GAGGGGCATCGGCGGAGTCGGGGCCGATTGCCAGACAGACAAGCTTTTCG
TCCAGATTCGCGGCGACCCGCTCCTCCTCCACGAACGACGCAAGGAAAAC
GAAGTTCACGCGGACGTCAGATTAATGTTAGATGCCGGCATCGATGTTGA
CTACTTTAGGTCCCCTTATAGGCTGGGGCAGACGTATGTGGATGGCAAGG
GCGTCACAAAGAAGTACAGGTTGGATGGCACTGTCAGAGGGAAAATGCAA
TGGTTCTCAGACGAAGTCGACGACTATAGGCACGCCCTGGATCGGTGCTT
GTCGGAAAGTCCGACGGCCCCGTACGTTTTGATAGTCGAGGAAGACGTAT
TCGCCACGAGGGACTTGATGGGTAAGCTAACCAGCGCGGTCGAGTTCCTG
GAATTGAAGCATGAAGGGGAGTGGAGCAGCCTCAAGCTCTTCGTCACGGA
CTACTGGCAAAACTGGGAACGGAAGCCGGCGGACGTCGCGCTGTTGGTGG
TTGGGGGTGTCTTGCTTGCCTGCCTTTGCGAGCTCTCGCTGAAGGCTTTC
TATCTTGCCGTCCTTGTTAGACGGTGGCCGGCGACGGAGGGGGGCGACGA
ATCCCGGTTACCGCCGTCGAAGGGGGTACACAGCACAACAGTAAGCAGGT
TTCAGCAAGGGGTGCATGTCGAGGCAGAGCGGGACGTTGTCGTCGTAGAT
TCCGACGGCTGTGAGAGGAAGAGGAGAAGGAAAAGCGGTTTTCTTTCCTT
TCGCAACCTTTGTGGGGAGAGAATTTCCGCGCGGCGGAAGTGGGTCCTGA
GGGCGCACCTTTTTTCTCTCGGAGTTGCGATTCTGTTGGCGGTGTCGAAA
CAAGCCCTACATTTGTCACGGGTATCGAGGAGGGGAATCTACGCAGATGA
CATGGGGTCCCATACGCTTGGGATGGTCTTCCCCAGACACGTTGCCGAAG
AAATCGTGTCGTTTCTTGAGAAGACGGATCGGCCACTGCCCATAGACGTG
CTGCTGCTAAAATTTAACGAGGGGGTAGTGGAGGAAGGGAAGGGCCAATT
CATCATCGTGCCGAGCTTGCTGCAGCACACGGGAATGGTCAGCAGCTCCA
CGGCGAAGGTCAAGTTCCAGCAGTCCGTCGGTGATCTTGACTTCTATCGA
AATGACATGAAGTTCGCGAGCAAGTTTGACGACCTGAGTGCGGAGAAACT
GGAGGGTTATAGTAGAACGTAGATGCCACCGCACAAACATAAATGCATTG
TCGTGGCAGCGGCGCTTGCGTTCCACGTCCTCTTGTATGCTGCCCTCCGG
TATTGCTGTCGGTCTGTGAGGCACAGCCTTTTCTACGAGCCTGACATGAA
TGAGGTCGGAAAACTGAGCACGGCCAGGATACGGTACGCGGAGAGGCTGT
TGGAGAGGCTCGCCAGGGAGAAGGTGGAGGAGGAAGAGGAGAGAGGAGAG
TACGATACGCGCGGGGACGAGAACGGGGAGAGCCGGTGTACGATGGAAAG
GTTCTGCGTGGGAATCGTTGGGACGGAGAAGAGGTTGGACCACAGGTATC
TGCTGCAATCGGTGGCGTCTTTGAGGGGCATCGGCGGAGTCGGGGCCGAT
TGCCAGACAGACAAGCTTTTCGTCCAGATTCGCGGCGACCCGCTCCTCCT
CCACGAACGACGCAAGGAAAACGAAGTTCACGCGGACGTCAGATTAATGT
TAGATGCCGGCATCGATGTTGACTACTTTAGGTCCCCTTATAGGCTGGGG
CAGACGTATGTGGATGGCAAGGGCGTCACAAAGAAGTACAGGTTGGATGG
CACTGTCAGAGGGAAAATGCAATGGTTCTCAGACGAAGTCGACGACTATA
GGCACGCCCTGGATCGGTGCTTGTCGGAAAGTCCGACGGCCCCGTACGTT
TTGATAGTCGAGGAAGACGTATTCGCCACGAGGGACTTGATGGGTAAGCT
AACCAGCGCGGTCGAGTTCCTGGAATTGAAGCATGAAGGGGAGTGGAGCA
GCCTCAAGCTCTTCGTCACGGACTACTGGCAAAACTGGGAACGGAAGCCG
GCGGACGTCGCGCTGTTGGTGGTTGGGGGTGTCTTGCTTGCCTGCCTTTG
CGAGCTCTCGCTGAAGGCTTTCTATCTTGCCGTCCTTGTTAGACGGTGGC
CGGCGACGGAGGGGGGCGACGAATCCCGGTTACCGCCGTCGAAGGGGGTA
CACAGCACAACAGTAAGCAGGTTTCAGCAAGGGGTGCATGTCGAGGCAGA
GCGGGACGTTGTCGTCGTAGATTCCGACGGCTGTGAGAGGAAGAGGAGAA
GGAAAAGCGGTTTTCTTTCCTTTCGCAACCTTTGTGGGGAGAGAATTTCC
GCGCGGCGGAAGTGGGTCCTGAGGGCGCACCTTTTTTCTCTCGGAGTTGC
GATTCTGTTGGCGGTGTCGAAACAAGCCCTACATTTGTCACGGGTATCGA
GGAGGGGAATCTACGCAGATGACATGGGGTCCCATACGCTTGGGATGGTC
TTCCCCAGACACGTTGCCGAAGAAATCGTGTCGTTTCTTGAGAAGACGGA
TCGGCCACTGCCCATAGACGTGCTGCTGCTAAAATTTAACGAGGGGGTAG
TGGAGGAAGGGAAGGGCCAATTCATCATCGTGCCGAGCTTGCTGCAGCAC
ACGGGAATGGTCAGCAGCTCCACGGCGAAGGTCAAGTTCCAGCAGTCCGT
CGGTGATCTTGACTTCTATCGAAATGACATGAAGTTCGCGAGCAAGTTTG
ACGACCTGAGTGCGGAGAAACTGGAGGGTTATAGTAGAACGTAG
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