mRNA_L-elsbetiae_contig2164.6626.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2164.6626.1
Unique NamemRNA_L-elsbetiae_contig2164.6626.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2164.6626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2164contigL-elsbetiae_contig2164:2830..4557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1311
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2164.6626.1prot_L-elsbetiae_contig2164.6626.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2164 2862..3560 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.3867366-UTR-L-elsbetiae_contig2164:2829..28611622815882.3867366-UTR-L-elsbetiae_contig2164:2829..2861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 2830..2861 +
1691683166.2147453-UTR-L-elsbetiae_contig2164:2829..28611691683166.2147453-UTR-L-elsbetiae_contig2164:2829..2861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 2830..2861 +
1622815882.4131434-UTR-L-elsbetiae_contig2164:3560..37631622815882.4131434-UTR-L-elsbetiae_contig2164:3560..3763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 3561..3763 +
1691683166.2328124-UTR-L-elsbetiae_contig2164:3560..37631691683166.2328124-UTR-L-elsbetiae_contig2164:3560..3763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 3561..3763 +
1622815882.4230356-UTR-L-elsbetiae_contig2164:4180..45571622815882.4230356-UTR-L-elsbetiae_contig2164:4180..4557Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 4181..4557 +
1691683166.244431-UTR-L-elsbetiae_contig2164:4180..45571691683166.244431-UTR-L-elsbetiae_contig2164:4180..4557Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2164 4181..4557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.3979785-CDS-L-elsbetiae_contig2164:2861..35601622815882.3979785-CDS-L-elsbetiae_contig2164:2861..3560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2164 2862..3560 +
1691683166.2237628-CDS-L-elsbetiae_contig2164:2861..35601691683166.2237628-CDS-L-elsbetiae_contig2164:2861..3560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2164 2862..3560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2164.6626.1

>prot_L-elsbetiae_contig2164.6626.1 ID=prot_L-elsbetiae_contig2164.6626.1|Name=mRNA_L-elsbetiae_contig2164.6626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=233bp
MVNVMSKRCAQQGCTTRPSYSVDDGSKKPEYCSQHAKAGMVDVMSKKCAQ
QGCTTRPSYGADDGSMRPEYCSQHAKAGMVNVQNKRCAQQDCTKRPSRGV
NDGNTKPEFCSRHAKPGMVGVVGKRRARQGSIKRAAKGSPGRCKAQLCLQ
HATEENTQTQSERRSSSERGTELGSHRGGAAEDANASRPRTPVKRKNPVL
LAAPSEDYFWSDSNDGARGEKRARQIGASPAA*
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mRNA from alignment at L-elsbetiae_contig2164:2830..4557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2164.6626.1 ID=mRNA_L-elsbetiae_contig2164.6626.1|Name=mRNA_L-elsbetiae_contig2164.6626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1728bp|location=Sequence derived from alignment at L-elsbetiae_contig2164:2830..4557+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGTACTGCTGCCAGCACGCCGAGGCTGGAATGGTGAACGTCATGAGC
AAGAGGTGTGCTCAGCAAGGCTGCACTACGAGACCGTCATACAGCGTGGA
TGATGGCAGCAAGAAGCCGGAGTACTGCTCCCAGCACGCCAAGGCTGGGA
TGGTGGACGTCATGAGCAAGAAGTGTGCTCAACAAGGCTGCACCACTCGG
CCGTCATACGGTGCGGACGATGGCAGCATGAGGCCGGAATACTGCTCCCA
GCATGCCAAGGCTGGCATGGTGAATGTCCAAAACAAGAGGTGTGCCCAAC
AAGACTGCACGAAACGCCCGTCACGCGGCGTTAACGACGGCAACACGAAG
CCCGAATTCTGCTCCCGGCACGCCAAGCCTGGCATGGTCGGCGTCGTTGG
CAAGAGGCGTGCTCGCCAAGGTTCCATCAAAAGGGCGGCAAAGGGTTCTC
CTGGAAGATGCAAGGCCCAACTTTGCTTGCAGCATGCCACGGAGGAAAAT
ACGCAAACACAATCAGAAAGGAGGTCCTCCAGTGAGCGTGGAACAGAGCT
CGGGTCTCACCGTGGTGGTGCAGCCGAGGATGCAAACGCCAGCAGACCTC
GTACACCAGTAAAGAGGAAGAACCCAGTCCTTCTGGCCGCTCCGTCTGAG
GATTATTTCTGGAGCGATAGCAACGACGGAGCTCGCGGCGAGAAGCGAGC
ACGCCAGATCGGCGCATCTCCTGCGGCTTAGGCGGTGTTGGTCAAGGCAG
AGGAGGCTGACAGGCCGGGAAAAGGGCAAGTTTCGCCTTCACAATCTGGA
CGCCCTCGGCAGACGGGAAGGATAAAGCTACGACCCACGCCTCCGATACG
ACGACAGAAGGGTGGAGAAGGCACGGCGGTGAAGCCAGAAGTTTCCGTTC
AAACATGAGCGAGATGAAGACGCTGATGATGCAGGTGCGTCAGCGCAACA
CCGGGTTCGCATAGAAGAAGTAGAGGAGCGTGTGTGTTGAAGTGACGCAG
CAAATGTGCGGTGTTGTGTGTGGAGTGAGTGATTGCCGATGACCGTCGGA
GGAGCAGTGTGGTTGTTTTGTCTTTTGTTTTGCAAGGCAGGTTGAAGCGT
AGTAGGCTCTTGGTGCTGATAATCGCACTCGTAGCTGGTCGACACCAAAC
TACATAGAGGTCGCCGCTAGGCTAGCGGCGACCTATTTCATCTTCCGAAT
CTAACAGGAATCGCACCTTTGTTTTCAAGCACGGCATGGAGCGCGCTCAT
GTCAGCACCAAACGCATGTTTGGTATCGGCTTAGGTTTGCCCATGATCTG
GTGCTCATGGTCGAACACCAACATCTCCCTCTCTCTTCCTCCCGCTTGCA
GGTGCTGCTAATGTGATTCTCTCTCGGGGTTTCTTTCCGCGCCTTTTGCT
GCTCGTGTGGTGGCTTGCTTCCCGACTTTGGAGGCCTTCATATTGCACTC
CTTCCGGCTCTCGACAAGTTTAGTCCAAAGCAGAGATGGTGCATGAGGAG
TCAGCCAAGAGAGCGAGATAGCACGGAGTCGGAGCCAGAGCATGCTGGCT
GGGAGTGGGTCATGGTCGCGTGCTCTTGCTAGGTCTGGGGCTGGAAGGGC
TGCGCCTTTTTATATTGGAGCCCGTTCTGGGTTATTACTGTAGACATTGT
GCTGATACCGAAAAGGCAAGAACGACGGCCCCCGTAAACGGAGTGTTAAA
GCATCGTATACGCTTGGTTGGGATAGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2164:2830..4557+

>mRNA_L-elsbetiae_contig2164.6626.1 ID=mRNA_L-elsbetiae_contig2164.6626.1|Name=mRNA_L-elsbetiae_contig2164.6626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig2164:2830..4557+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTCATGAGCAAGAGGTGTGCTCAGCAAGGCTGCACTACGAG
ACCGTCATACAGCGTGGATGATGGCAGCAAGAAGCCGGAGTACTGCTCCC
AGCACGCCAAGGCTGGGATGGTGGACGTCATGAGCAAGAAGTGTGCTCAA
CAAGGCTGCACCACTCGGCCGTCATACGGTGCGGACGATGGCAGCATGAG
GCCGGAATACTGCTCCCAGCATGCCAAGGCTGGCATGGTGAATGTCCAAA
ACAAGAGGTGTGCCCAACAAGACTGCACGAAACGCCCGTCACGCGGCGTT
AACGACGGCAACACGAAGCCCGAATTCTGCTCCCGGCACGCCAAGCCTGG
CATGGTCGGCGTCGTTGGCAAGAGGCGTGCTCGCCAAGGTTCCATCAAAA
GGGCGGCAAAGGGTTCTCCTGGAAGATGCAAGGCCCAACTTTGCTTGCAG
CATGCCACGGAGGAAAATACGCAAACACAATCAGAAAGGAGGTCCTCCAG
TGAGCGTGGAACAGAGCTCGGGTCTCACCGTGGTGGTGCAGCCGAGGATG
CAAACGCCAGCAGACCTCGTACACCAGTAAAGAGGAAGAACCCAGTCCTT
CTGGCCGCTCCGTCTGAGGATTATTTCTGGAGCGATAGCAACGACGGAGC
TCGCGGCGAGAAGCGAGCACGCCAGATCGGCGCATCTCCTGCGGCTTAGA
TGGTGAACGTCATGAGCAAGAGGTGTGCTCAGCAAGGCTGCACTACGAGA
CCGTCATACAGCGTGGATGATGGCAGCAAGAAGCCGGAGTACTGCTCCCA
GCACGCCAAGGCTGGGATGGTGGACGTCATGAGCAAGAAGTGTGCTCAAC
AAGGCTGCACCACTCGGCCGTCATACGGTGCGGACGATGGCAGCATGAGG
CCGGAATACTGCTCCCAGCATGCCAAGGCTGGCATGGTGAATGTCCAAAA
CAAGAGGTGTGCCCAACAAGACTGCACGAAACGCCCGTCACGCGGCGTTA
ACGACGGCAACACGAAGCCCGAATTCTGCTCCCGGCACGCCAAGCCTGGC
ATGGTCGGCGTCGTTGGCAAGAGGCGTGCTCGCCAAGGTTCCATCAAAAG
GGCGGCAAAGGGTTCTCCTGGAAGATGCAAGGCCCAACTTTGCTTGCAGC
ATGCCACGGAGGAAAATACGCAAACACAATCAGAAAGGAGGTCCTCCAGT
GAGCGTGGAACAGAGCTCGGGTCTCACCGTGGTGGTGCAGCCGAGGATGC
AAACGCCAGCAGACCTCGTACACCAGTAAAGAGGAAGAACCCAGTCCTTC
TGGCCGCTCCGTCTGAGGATTATTTCTGGAGCGATAGCAACGACGGAGCT
CGCGGCGAGAAGCGAGCACGCCAGATCGGCGCATCTCCTGCGGCTTAG
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