mRNA_L-elsbetiae_contig21636.6625.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21636.6625.1
Unique NamemRNA_L-elsbetiae_contig21636.6625.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21636.6625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21636contigL-elsbetiae_contig21636:1496..2217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.348611-CDS-L-elsbetiae_contig21636:1495..16381622815882.348611-CDS-L-elsbetiae_contig21636:1495..1638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21636 1496..1638 -
1691683166.1943312-CDS-L-elsbetiae_contig21636:1495..16381691683166.1943312-CDS-L-elsbetiae_contig21636:1495..1638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21636 1496..1638 -
1622815882.358486-CDS-L-elsbetiae_contig21636:1994..22171622815882.358486-CDS-L-elsbetiae_contig21636:1994..2217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21636 1995..2217 -
1691683166.204472-CDS-L-elsbetiae_contig21636:1994..22171691683166.204472-CDS-L-elsbetiae_contig21636:1994..2217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21636 1995..2217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21636.6625.1prot_L-elsbetiae_contig21636.6625.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21636 1496..2217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21636.6625.1

>prot_L-elsbetiae_contig21636.6625.1 ID=prot_L-elsbetiae_contig21636.6625.1|Name=mRNA_L-elsbetiae_contig21636.6625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
SFRALSLELCISNTCDKLDLSFSSKGHRYIVNRPLPDLRDMPDCPRKAVD
EHTMKQHRNCFKAAEDRIRVALRHGDDPTTCDQAMLELEAAAVDLEASSP
KACDWDLALYNLPPLGSPLGGG
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mRNA from alignment at L-elsbetiae_contig21636:1496..2217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21636.6625.1 ID=mRNA_L-elsbetiae_contig21636.6625.1|Name=mRNA_L-elsbetiae_contig21636.6625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=722bp|location=Sequence derived from alignment at L-elsbetiae_contig21636:1496..2217- (Laminarionema elsbetiae ELsaHSoW15)
TCTTTCCGTGCTCTCTCTCTGGAGCTCTGCATCTCTAATACATGTGATAA
ACTCGATCTCTCCTTCTCAAGTAAAGGACATAGATATATCGTCAACAGGC
CGCTGCCTGATCTTCGAGACATGCCAGACTGCCCTCGTAAAGCCGTGGAC
GAACACACCATGAAGCAGCACCGTAACTGTTTCAAGGCAGCTGAGGATCG
CATCCGAGTCGCTCTGCGGCATGGTAAGTCTGTCAGTCGGGGAGGCTTTT
GCTCCCAGGCGCCCGTATTTTGGGGGCTAGATATGCTGTTCTCTCGGTGA
GGGCGAGAATATAGCGTGTTTCTTGCGAGAACAAACCCTGTGAGTTTCCA
TCCCAGTTATTCGGGCGACTGCCACACCTTTCGGTGTGTTGCACTACGTA
CACGTTTCTGTGTAGCTCCTTTGTACAGCAAGACGTATCCACGAGGTCAC
ACACAGGGATGTTGTACACATTGCACGTGTGTTTCCCCCTAAGCATACAC
AAGCATTTTTCTCGTATATTATCTTCTCACACAAGCATAGTCTAAGTAAG
TGTTCTCGTTTTCTTCTCTGTACCTACAGGTGACGACCCAACCACATGCG
ACCAAGCCATGCTCGAGCTGGAGGCAGCAGCGGTAGACCTCGAAGCGAGC
TCGCCCAAGGCGTGCGATTGGGACTTGGCTTTGTACAACCTACCTCCTCT
GGGAAGCCCTCTTGGCGGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21636:1496..2217-

>mRNA_L-elsbetiae_contig21636.6625.1 ID=mRNA_L-elsbetiae_contig21636.6625.1|Name=mRNA_L-elsbetiae_contig21636.6625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig21636:1496..2217- (Laminarionema elsbetiae ELsaHSoW15)
TCTTTCCGTGCTCTCTCTCTGGAGCTCTGCATCTCTAATACATGTGATAA
ACTCGATCTCTCCTTCTCAAGTAAAGGACATAGATATATCGTCAACAGGC
CGCTGCCTGATCTTCGAGACATGCCAGACTGCCCTCGTAAAGCCGTGGAC
GAACACACCATGAAGCAGCACCGTAACTGTTTCAAGGCAGCTGAGGATCG
CATCCGAGTCGCTCTGCGGCATGTCTTTCCGTGCTCTCTCTCTGGAGCTC
TGCATCTCTAATACATGTGATAAACTCGATCTCTCCTTCTCAAGTAAAGG
ACATAGATATATCGTCAACAGGCCGCTGCCTGATCTTCGAGACATGCCAG
ACTGCCCTCGTAAAGCCGTGGACGAACACACCATGAAGCAGCACCGTAAC
TGTTTCAAGGCAGCTGAGGATCGCATCCGAGTCGCTCTGCGGCATGGTGA
CGACCCAACCACATGCGACCAAGCCATGCTCGAGCTGGAGGCAGCAGCGG
TAGACCTCGAAGCGAGCTCGCCCAAGGCGTGCGATTGGGACTTGGCTTTG
TACAACCTACCTCCTCTGGGAAGCCCTCTTGGCGGTGGGGTGACGACCCA
ACCACATGCGACCAAGCCATGCTCGAGCTGGAGGCAGCAGCGGTAGACCT
CGAAGCGAGCTCGCCCAAGGCGTGCGATTGGGACTTGGCTTTGTACAACC
TACCTCCTCTGGGAAGCCCTCTTGGCGGTGGG
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