mRNA_L-elsbetiae_contig21621.6623.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21621.6623.1
Unique NamemRNA_L-elsbetiae_contig21621.6623.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21621.6623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21621contigL-elsbetiae_contig21621:1484..2249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size766
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21621.6623.1prot_L-elsbetiae_contig21621.6623.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21621 1684..2121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.2324212-UTR-L-elsbetiae_contig21621:1483..16831622815882.2324212-UTR-L-elsbetiae_contig21621:1483..1683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21621 1484..1683 +
1691683166.13242-UTR-L-elsbetiae_contig21621:1483..16831691683166.13242-UTR-L-elsbetiae_contig21621:1483..1683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21621 1484..1683 +
1622815882.258125-UTR-L-elsbetiae_contig21621:2121..22491622815882.258125-UTR-L-elsbetiae_contig21621:2121..2249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21621 2122..2249 +
1691683166.151349-UTR-L-elsbetiae_contig21621:2121..22491691683166.151349-UTR-L-elsbetiae_contig21621:2121..2249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21621 2122..2249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.2442584-CDS-L-elsbetiae_contig21621:1683..21211622815882.2442584-CDS-L-elsbetiae_contig21621:1683..2121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21621 1684..2121 +
1691683166.14186-CDS-L-elsbetiae_contig21621:1683..21211691683166.14186-CDS-L-elsbetiae_contig21621:1683..2121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21621 1684..2121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21621.6623.1

>prot_L-elsbetiae_contig21621.6623.1 ID=prot_L-elsbetiae_contig21621.6623.1|Name=mRNA_L-elsbetiae_contig21621.6623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MSLCASPPELAALLFQAISHRLPPILPDCTVHTQCTSKIHLWFLVLLEPN
SSILKDLNPPRFEAIFGRVLRQKCVLAFSRRTRYQRASYFAGERIWASRL
GTPNIPSLRGRVREKAPVDLQKSRSDQGVLVHALGITCASRWCCS*
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mRNA from alignment at L-elsbetiae_contig21621:1484..2249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21621.6623.1 ID=mRNA_L-elsbetiae_contig21621.6623.1|Name=mRNA_L-elsbetiae_contig21621.6623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=766bp|location=Sequence derived from alignment at L-elsbetiae_contig21621:1484..2249+ (Laminarionema elsbetiae ELsaHSoW15)
GTACGTTTGGATCAGGTGTTTCCGGAAAATGAAATGTCACGGCATTTGCT
GCTGCTGGGTGCATCCCGCCAATCAACCAGTTATCGCACGTCCGATTATC
CGCTCTTTTTTCGGACTTGCTGGTAGTTCACCCTTTTTTTCGCTAAATAT
TCAGCACTAGCTGTGATTTCCGGGCTCAGACAAAAGATTATGGCGATTTT
ATGTCATTATGTGCGTCACCACCAGAACTGGCAGCACTGCTATTCCAAGC
CATTTCTCACAGATTACCACCAATCCTGCCAGACTGTACGGTTCATACCC
AATGCACTTCTAAAATCCATTTATGGTTTTTAGTCCTTCTCGAACCAAAC
AGTTCAATCCTGAAAGACTTAAACCCGCCGCGATTTGAGGCTATTTTCGG
TCGGGTTTTGAGGCAAAAATGCGTTCTAGCGTTTTCTCGCCGCACACGCT
ACCAACGGGCCTCATATTTCGCCGGTGAACGCATCTGGGCCTCAAGGTTG
GGCACCCCCAATATCCCCTCTCTCCGAGGCCGGGTGCGGGAGAAAGCGCC
CGTGGACCTTCAAAAATCACGGTCCGACCAGGGTGTACTTGTGCACGCGC
TTGGAATCACATGCGCGAGCCGCTGGTGCTGTAGCTAAGCCTATCGCGCA
TCGTCTGGCCGAGTAGCATAGAAATCGTTGAAGCCGATAAGGAGAAAATC
GAGACACTGTGTGTGTAACCCCAGCAAACCTCGGTGGTCGTCTTCACACA
GGTCCCGGCGACTGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21621:1484..2249+

>mRNA_L-elsbetiae_contig21621.6623.1 ID=mRNA_L-elsbetiae_contig21621.6623.1|Name=mRNA_L-elsbetiae_contig21621.6623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig21621:1484..2249+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCATTATGTGCGTCACCACCAGAACTGGCAGCACTGCTATTCCAAGC
CATTTCTCACAGATTACCACCAATCCTGCCAGACTGTACGGTTCATACCC
AATGCACTTCTAAAATCCATTTATGGTTTTTAGTCCTTCTCGAACCAAAC
AGTTCAATCCTGAAAGACTTAAACCCGCCGCGATTTGAGGCTATTTTCGG
TCGGGTTTTGAGGCAAAAATGCGTTCTAGCGTTTTCTCGCCGCACACGCT
ACCAACGGGCCTCATATTTCGCCGGTGAACGCATCTGGGCCTCAAGGTTG
GGCACCCCCAATATCCCCTCTCTCCGAGGCCGGGTGCGGGAGAAAGCGCC
CGTGGACCTTCAAAAATCACGGTCCGACCAGGGTGTACTTGTGCACGCGC
TTGGAATCACATGCGCGAGCCGCTGGTGCTGTAGCTAAATGTCATTATGT
GCGTCACCACCAGAACTGGCAGCACTGCTATTCCAAGCCATTTCTCACAG
ATTACCACCAATCCTGCCAGACTGTACGGTTCATACCCAATGCACTTCTA
AAATCCATTTATGGTTTTTAGTCCTTCTCGAACCAAACAGTTCAATCCTG
AAAGACTTAAACCCGCCGCGATTTGAGGCTATTTTCGGTCGGGTTTTGAG
GCAAAAATGCGTTCTAGCGTTTTCTCGCCGCACACGCTACCAACGGGCCT
CATATTTCGCCGGTGAACGCATCTGGGCCTCAAGGTTGGGCACCCCCAAT
ATCCCCTCTCTCCGAGGCCGGGTGCGGGAGAAAGCGCCCGTGGACCTTCA
AAAATCACGGTCCGACCAGGGTGTACTTGTGCACGCGCTTGGAATCACAT
GCGCGAGCCGCTGGTGCTGTAGCTAA
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